Wall clock time and date at job start Sat Apr 11 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48499 * 109.46942 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46764 * 299.99575 * 3 2 1 6 6 H 1.48499 * 109.47395 * 59.99680 * 3 2 1 7 7 C 1.38815 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99951 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46849 * 184.93244 * 10 9 7 12 12 H 1.08997 * 109.99909 * 54.22290 * 11 10 9 13 13 C 1.54327 * 109.99324 * 293.18235 * 11 10 9 14 14 C 1.55159 * 103.02015 * 218.66564 * 13 11 10 15 15 C 1.54905 * 101.57855 * 35.31004 * 14 13 11 16 16 N 1.47022 * 109.87739 * 175.31390 * 11 10 9 17 17 C 1.34775 * 125.65072 * 298.39660 * 16 11 10 18 18 O 1.21283 * 119.99840 * 354.65381 * 17 16 11 19 19 C 1.50700 * 119.99979 * 174.65409 * 17 16 11 20 20 C 1.52997 * 109.46837 * 179.97438 * 19 17 16 21 21 C 1.53006 * 109.47004 * 179.97438 * 20 19 17 22 22 O 1.42898 * 109.47523 * 179.97438 * 21 20 19 23 23 C 1.42894 * 114.00300 * 180.02562 * 22 21 20 24 24 C 1.53180 * 109.54267 * 269.82228 * 23 22 21 25 25 C 1.53102 * 109.15738 * 183.24215 * 24 23 22 26 26 O 1.42903 * 109.48950 * 57.47184 * 25 24 23 27 27 C 1.42904 * 114.10025 * 298.89198 * 26 25 24 28 28 C 1.53092 * 109.41282 * 61.15380 * 27 26 25 29 29 H 0.97001 * 120.00324 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00141 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.46648 * 64.93525 * 10 9 7 32 32 H 1.08999 * 109.46858 * 304.93574 * 10 9 7 33 33 H 1.09002 * 110.85345 * 100.20152 * 13 11 10 34 34 H 1.08998 * 110.51758 * 336.97849 * 13 11 10 35 35 H 1.08998 * 111.00924 * 277.23030 * 14 13 11 36 36 H 1.09002 * 111.00509 * 153.37937 * 14 13 11 37 37 H 1.09009 * 110.36334 * 204.14717 * 15 14 13 38 38 H 1.09001 * 110.37104 * 81.82969 * 15 14 13 39 39 H 1.08996 * 109.47096 * 60.00196 * 19 17 16 40 40 H 1.09001 * 109.47156 * 299.99969 * 19 17 16 41 41 H 1.08999 * 109.47586 * 60.00265 * 20 19 17 42 42 H 1.08997 * 109.47281 * 299.99184 * 20 19 17 43 43 H 1.09009 * 109.46765 * 59.99943 * 21 20 19 44 44 H 1.09001 * 109.47134 * 300.00088 * 21 20 19 45 45 H 1.09004 * 109.54344 * 30.00013 * 23 22 21 46 46 H 1.08997 * 109.51943 * 303.05756 * 24 23 22 47 47 H 1.08993 * 109.52129 * 63.24839 * 24 23 22 48 48 H 1.09004 * 109.40830 * 297.49301 * 25 24 23 49 49 H 1.09001 * 109.49529 * 177.51138 * 25 24 23 50 50 H 1.09001 * 109.47557 * 301.17512 * 27 26 25 51 51 H 1.08999 * 109.49021 * 181.14539 * 27 26 25 52 52 H 1.09002 * 109.52292 * 182.48803 * 28 27 26 53 53 H 1.08998 * 109.57598 * 62.32862 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0685 -4.8170 -0.1235 12 1 0.4348 -4.6745 -0.9988 13 6 0.1946 -4.9031 1.1456 14 6 0.0587 -6.4319 1.3734 15 6 1.4482 -6.9394 0.9137 16 7 1.7995 -6.0876 -0.2371 17 6 2.6536 -6.4167 -1.2263 18 8 2.7994 -5.6738 -2.1738 19 6 3.4276 -7.7078 -1.1550 20 6 4.3169 -7.8382 -2.3931 21 6 5.1033 -9.1488 -2.3204 22 8 5.9335 -9.2710 -3.4770 23 6 6.7142 -10.4674 -3.5084 24 6 8.0638 -10.2166 -2.8287 25 6 8.9239 -11.4784 -2.9387 26 8 9.0830 -11.8286 -4.3150 27 6 7.8569 -12.1210 -4.9882 28 6 6.9548 -10.8843 -4.9626 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6168 -3.7537 0.9314 32 1 2.7495 -3.6771 -0.8419 33 1 -0.7822 -4.4503 0.9755 34 1 0.6983 -4.4308 1.9890 35 1 -0.7347 -6.8502 0.7540 36 1 -0.1105 -6.6565 2.4265 37 1 1.3884 -7.9841 0.6082 38 1 2.1797 -6.8183 1.7127 39 1 2.7325 -8.5465 -1.1174 40 1 4.0487 -7.7101 -0.2592 41 1 5.0121 -6.9996 -2.4312 42 1 3.6956 -7.8362 -3.2886 43 1 4.4084 -9.9878 -2.2821 44 1 5.7247 -9.1505 -1.4249 45 1 6.1840 -11.2626 -2.9841 46 1 8.5712 -9.3874 -3.3216 47 1 7.9031 -9.9740 -1.7784 48 1 8.4356 -12.2968 -2.4095 49 1 9.9021 -11.2916 -2.4956 50 1 7.3546 -12.9477 -4.4858 51 1 8.0663 -12.3969 -6.0217 52 1 6.0018 -11.1187 -5.4368 53 1 7.4382 -10.0685 -5.5001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699762385.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:29 Heat of formation + Delta-G solvation = -154.213945 kcal Electronic energy + Delta-G solvation = -29541.149727 eV Core-core repulsion = 25411.500250 eV Total energy + Delta-G solvation = -4129.649477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.27922 -40.58020 -38.90118 -38.42638 -36.45061 -34.98736 -33.57447 -33.05933 -32.44708 -32.10705 -30.39908 -28.03673 -26.75274 -25.31382 -24.77812 -24.54428 -23.60902 -22.71001 -21.66045 -21.23561 -20.11980 -19.13344 -18.17415 -17.95912 -17.60819 -17.16515 -16.96855 -16.85716 -16.49167 -16.08134 -15.84579 -15.77071 -15.35085 -15.07906 -15.06501 -14.91795 -14.75767 -14.24624 -14.06463 -13.82650 -13.67990 -13.60699 -13.27456 -13.09999 -12.98070 -12.93017 -12.79566 -12.51662 -12.39505 -12.24505 -12.18666 -12.02887 -11.94006 -11.88220 -11.76964 -11.68172 -11.57863 -11.33734 -11.05375 -10.84756 -10.66742 -10.44026 -9.66097 -9.08763 -8.01541 -5.31550 1.42039 1.44395 1.54390 1.63097 1.92086 2.51087 2.61926 2.96099 3.30832 3.46172 3.66571 3.74484 3.75720 3.82929 3.91877 3.96526 4.00314 4.03449 4.09366 4.14246 4.25574 4.29384 4.32613 4.35633 4.44926 4.49042 4.52315 4.53137 4.57493 4.60985 4.70130 4.75676 4.77736 4.82920 4.84938 4.94347 5.01878 5.04409 5.07960 5.12605 5.14301 5.15240 5.18650 5.27926 5.35180 5.40333 5.47325 6.20248 6.22695 6.30902 6.60000 7.19766 7.26723 7.97792 8.25615 9.21804 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.001817 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.857581 B =15409.907598 C =16804.283428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.736 5.736 10 C 0.154 3.846 11 C 0.135 3.865 12 H 0.044 0.956 13 C -0.120 4.120 14 C -0.120 4.120 15 C 0.095 3.905 16 N -0.614 5.614 17 C 0.511 3.489 18 O -0.592 6.592 19 C -0.114 4.114 20 C -0.102 4.102 21 C 0.068 3.932 22 O -0.408 6.408 23 C 0.085 3.915 24 C -0.178 4.178 25 C 0.062 3.938 26 O -0.406 6.406 27 C 0.064 3.936 28 C -0.155 4.155 29 H 0.254 0.746 30 H 0.377 0.623 31 H 0.019 0.981 32 H 0.001 0.999 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.105 0.895 50 H 0.071 0.929 51 H 0.109 0.891 52 H 0.087 0.913 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -33.745 1.193 35.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.380 5.380 10 C 0.027 3.973 11 C 0.030 3.970 12 H 0.063 0.937 13 C -0.158 4.158 14 C -0.157 4.157 15 C -0.026 4.026 16 N -0.348 5.348 17 C 0.302 3.698 18 O -0.473 6.473 19 C -0.154 4.154 20 C -0.141 4.141 21 C -0.008 4.008 22 O -0.328 6.328 23 C 0.027 3.973 24 C -0.216 4.216 25 C -0.014 4.014 26 O -0.326 6.326 27 C -0.012 4.012 28 C -0.193 4.193 29 H 0.063 0.937 30 H 0.209 0.791 31 H 0.037 0.963 32 H 0.019 0.981 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.123 0.877 50 H 0.089 0.911 51 H 0.127 0.873 52 H 0.106 0.894 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.743 -33.176 0.408 34.874 hybrid contribution -0.303 1.839 -0.195 1.874 sum 10.441 -31.337 0.213 33.031 Atomic orbital electron populations 1.69810 1.06443 1.26251 1.58982 1.25586 0.96564 1.01041 1.03143 0.85033 0.77941 0.79449 0.77056 1.19578 1.21834 1.21025 1.19585 0.91208 0.85450 1.42097 0.91571 1.42331 1.05565 1.00661 1.89439 1.20920 0.94103 0.85627 0.96688 1.21511 0.92606 0.83808 0.99026 0.93734 1.22590 0.99079 0.98954 0.95167 1.22821 0.96640 0.92340 1.03949 1.22712 0.96921 0.95634 0.87338 1.48728 1.43961 1.16938 1.25170 1.21303 0.78925 0.89142 0.80421 1.90746 1.66706 1.55116 1.34701 1.21522 0.99193 0.93976 1.00676 1.21154 0.97888 0.97240 0.97774 1.22574 0.92988 0.97047 0.88226 1.87941 1.58489 1.42279 1.44066 1.22245 0.91068 0.87083 0.96878 1.22729 0.96757 0.99771 1.02362 1.22682 1.01245 0.95133 0.82357 1.87924 1.31280 1.88947 1.24403 1.22701 0.84418 0.95108 0.99014 1.22319 1.01634 0.99380 0.95978 0.93708 0.79074 0.96317 0.98137 0.90755 0.91024 0.89865 0.86878 0.86704 0.89673 0.85029 0.85899 0.93449 0.92646 0.90708 0.91456 0.89925 0.92338 0.89447 0.91138 0.87708 0.91080 0.87318 0.89431 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.79 13.06 21.65 0.28 -60.51 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.98 48.39 29.55 68.60 2.03 50.42 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.25 -15.25 9.99 84.03 0.84 -14.41 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -40.93 5.45 -343.45 -1.87 -42.80 16 10 C 0.15 7.20 5.65 86.38 0.49 7.69 16 11 C 0.14 4.90 2.92 45.34 0.13 5.03 16 12 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 13 C -0.12 -3.39 6.09 31.78 0.19 -3.20 16 14 C -0.12 -1.98 7.09 31.99 0.23 -1.76 16 15 C 0.09 1.48 6.65 86.85 0.58 2.06 16 16 N -0.61 -17.10 3.06 -788.05 -2.41 -19.51 16 17 C 0.51 15.52 7.57 87.66 0.66 16.18 16 18 O -0.59 -25.54 15.17 -3.04 -0.05 -25.58 16 19 C -0.11 -1.95 4.79 29.85 0.14 -1.81 16 20 C -0.10 -2.20 4.87 30.60 0.15 -2.05 16 21 C 0.07 1.00 5.75 71.98 0.41 1.41 16 22 O -0.41 -8.21 10.00 -148.98 -1.49 -9.70 16 23 C 0.08 1.19 2.69 30.71 0.08 1.27 16 24 C -0.18 -2.36 5.77 30.69 0.18 -2.18 16 25 C 0.06 0.67 6.84 72.02 0.49 1.16 16 26 O -0.41 -6.24 10.77 -148.98 -1.60 -7.84 16 27 C 0.06 0.69 6.84 72.01 0.49 1.18 16 28 C -0.16 -2.13 5.79 30.68 0.18 -1.95 16 29 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.38 21.55 7.45 -92.71 -0.69 20.86 16 31 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 32 H 0.00 0.03 6.90 -2.39 -0.02 0.01 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.18 7.77 -2.39 -0.02 2.17 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 0.91 7.51 -2.38 -0.02 0.89 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.13 1.23 7.77 -2.39 -0.02 1.22 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 42 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 43 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 44 H 0.07 0.75 7.97 -2.39 -0.02 0.73 16 45 H 0.08 0.78 7.79 -2.38 -0.02 0.76 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.09 0.92 7.97 -2.39 -0.02 0.91 16 48 H 0.07 0.48 8.14 -2.38 -0.02 0.47 16 49 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -85.02 418.63 0.78 -84.25 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.18 Total: 26.46 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.72 Total: 4.83 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -4.01 Total: -122.83 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -3.14 Total: -43.12 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -85.02 0.78 -84.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699762385.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.968 kcal (2) G-P(sol) polarization free energy of solvation -85.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds