Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.80393 * 2 1 4 4 C 1.54994 * 110.91158 * 236.33284 * 2 1 3 5 5 O 1.44373 * 103.49097 * 204.77822 * 4 2 1 6 6 C 1.43744 * 106.98034 * 40.05763 * 5 4 2 7 7 H 1.09005 * 110.00285 * 92.97615 * 6 5 4 8 8 C 1.52992 * 109.88201 * 214.05986 * 6 5 4 9 9 C 1.52997 * 109.47482 * 292.83157 * 8 6 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10 15 15 O 1.42898 * 110.64294 * 66.68972 * 14 13 12 16 16 C 1.55156 * 110.72281 * 190.02494 * 14 13 12 17 17 C 1.54917 * 101.58414 * 153.86435 * 16 14 13 18 18 N 1.47429 * 104.82953 * 322.99238 * 17 16 14 19 19 C 1.36938 * 125.64425 * 204.16052 * 18 17 16 20 20 H 1.08004 * 119.99411 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99937 * 359.96260 * 19 18 17 22 22 N 1.31611 * 120.00281 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99678 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46930 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47257 * 119.99784 * 23 21 19 26 26 H 1.48497 * 109.47129 * 239.99989 * 23 21 19 27 27 C 1.47026 * 108.70330 * 24.12596 * 18 17 16 28 28 C 1.54098 * 107.29025 * 333.48836 * 6 5 4 29 29 H 1.09004 * 109.46923 * 296.37221 * 1 2 3 30 30 H 1.09002 * 109.47160 * 56.37413 * 1 2 3 31 31 H 1.08999 * 109.46787 * 176.37749 * 1 2 3 32 32 H 1.08996 * 109.47232 * 183.62666 * 3 2 1 33 33 H 1.08999 * 109.46837 * 303.62905 * 3 2 1 34 34 H 1.09003 * 109.47291 * 63.62641 * 3 2 1 35 35 H 1.09002 * 110.61449 * 323.27684 * 4 2 1 36 36 H 1.08993 * 110.61927 * 86.27153 * 4 2 1 37 37 H 1.09002 * 109.47103 * 172.82910 * 8 6 5 38 38 H 1.08998 * 109.46862 * 52.83722 * 8 6 5 39 39 H 1.09002 * 109.47153 * 59.99783 * 9 8 6 40 40 H 1.09001 * 109.46832 * 299.99974 * 9 8 6 41 41 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 42 42 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 43 43 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 44 44 H 0.96706 * 113.99596 * 300.70371 * 15 14 13 45 45 H 1.08999 * 111.00716 * 271.94171 * 16 14 13 46 46 H 1.09003 * 111.00469 * 35.79379 * 16 14 13 47 47 H 1.08995 * 110.36758 * 204.15236 * 17 16 14 48 48 H 1.09000 * 110.45671 * 81.87680 * 17 16 14 49 49 H 0.96999 * 120.00046 * 180.02562 * 22 21 19 50 50 H 1.08992 * 109.87947 * 239.51904 * 27 18 17 51 51 H 1.09003 * 110.00568 * 118.43058 * 27 18 17 52 52 H 1.09007 * 110.48849 * 120.70171 * 28 6 5 53 53 H 1.08995 * 110.48745 * 243.21782 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 6 2.0832 -0.8026 -1.2050 5 8 3.3941 -1.2145 -0.7620 6 6 3.2719 -1.5879 0.6207 7 1 3.0838 -2.6585 0.7026 8 6 4.5543 -1.2262 1.3726 9 6 5.7040 -2.1021 0.8709 10 6 6.9673 -1.7453 1.6111 11 8 6.9496 -0.8764 2.4570 12 7 8.1165 -2.3927 1.3338 13 6 9.3443 -2.0462 2.0538 14 6 10.4941 -2.9220 1.5520 15 8 10.8083 -2.6110 0.1931 16 6 11.7429 -2.7613 2.4587 17 6 12.4583 -4.1189 2.2465 18 7 11.3692 -5.1072 2.1434 19 6 11.4778 -6.4453 2.4134 20 1 10.6170 -7.0891 2.3075 21 6 12.6940 -6.9743 2.8228 22 7 13.7430 -6.1899 2.9511 23 14 12.8418 -8.7996 3.1918 24 1 11.5283 -9.4568 2.9729 25 1 13.8553 -9.4061 2.2917 26 1 13.2591 -8.9868 4.6046 27 6 10.1472 -4.4181 1.7035 28 6 2.0825 -0.8008 1.2042 29 1 -0.3633 0.4565 0.9208 30 1 -0.3633 0.5691 -0.8557 31 1 -0.3633 -1.0256 -0.0649 32 1 3.1611 1.4057 -0.0650 33 1 1.6704 1.9720 -0.8557 34 1 1.7757 1.9321 0.9207 35 1 1.4563 -1.6709 -1.4081 36 1 2.1582 -0.1673 -2.0874 37 1 4.4091 -1.3934 2.4399 38 1 4.7939 -0.1772 1.1985 39 1 5.8492 -1.9349 -0.1964 40 1 5.4643 -3.1511 1.0450 41 1 8.1305 -3.0878 0.6575 42 1 9.5842 -0.9973 1.8794 43 1 9.1991 -2.2131 3.1211 44 1 10.0701 -2.7341 -0.4193 45 1 12.3669 -1.9338 2.1212 46 1 11.4542 -2.6307 3.5017 47 1 13.0987 -4.3475 3.0983 48 1 13.0432 -4.1016 1.3269 49 1 14.5930 -6.5597 3.2369 50 1 9.3624 -4.5430 2.4495 51 1 9.8160 -4.8207 0.7463 52 1 1.3246 -1.4837 1.5882 53 1 2.4206 -0.1262 1.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699904272.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -148.011735 kcal Electronic energy + Delta-G solvation = -30149.840541 eV Core-core repulsion = 26020.460012 eV Total energy + Delta-G solvation = -4129.380529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.23744 -40.78895 -39.83075 -36.82427 -35.62805 -35.33439 -34.44005 -33.97855 -31.48319 -30.60019 -29.44008 -28.23075 -27.55768 -26.97302 -25.77927 -24.50335 -22.42423 -21.90401 -21.33749 -21.24073 -20.32708 -18.95936 -18.60492 -17.55509 -17.19666 -16.83295 -16.75910 -16.57888 -16.40273 -16.19152 -15.76066 -15.58241 -15.09598 -14.99757 -14.91114 -14.47575 -14.23554 -14.15926 -13.89228 -13.83821 -13.72817 -13.41239 -13.30071 -12.99099 -12.92141 -12.80072 -12.72771 -12.40102 -12.38125 -12.20311 -12.08617 -12.05195 -11.99054 -11.79857 -11.62562 -11.61731 -11.51974 -11.37001 -10.99078 -10.79790 -10.74875 -10.48350 -10.15864 -8.91593 -7.78502 -5.23613 1.46751 1.47826 1.58027 1.64767 2.13834 2.48234 2.95872 3.15407 3.31597 3.43003 3.50847 3.67179 3.73062 3.82793 3.90817 3.92123 3.94965 3.98317 4.17250 4.29281 4.36044 4.45629 4.48247 4.58911 4.59964 4.68468 4.72227 4.75951 4.77187 4.80743 4.83898 4.88442 4.93454 4.94555 4.97951 5.05208 5.07763 5.07994 5.13879 5.21061 5.30884 5.33018 5.38853 5.43686 5.45815 5.59896 5.78536 6.03422 6.28015 6.48649 6.78822 7.08355 7.22113 7.75483 8.39377 9.23807 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.001865 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.258841 B =15008.605468 C =15699.176120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.135 4.135 4 C 0.050 3.950 5 O -0.391 6.391 6 C 0.078 3.922 7 H 0.080 0.920 8 C -0.096 4.096 9 C -0.130 4.130 10 C 0.512 3.488 11 O -0.585 6.585 12 N -0.720 5.720 13 C 0.119 3.881 14 C 0.125 3.875 15 O -0.555 6.555 16 C -0.121 4.121 17 C 0.160 3.840 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.084 0.916 21 C -0.070 4.070 22 N -0.949 5.949 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.113 3.887 28 C -0.145 4.145 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.412 0.588 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.386 0.614 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.075 0.925 48 H -0.015 1.015 49 H 0.247 0.753 50 H 0.038 0.962 51 H 0.037 0.963 52 H 0.089 0.911 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.780 12.577 -7.702 31.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.026 4.026 5 O -0.310 6.310 6 C 0.020 3.980 7 H 0.098 0.902 8 C -0.134 4.134 9 C -0.170 4.170 10 C 0.300 3.700 11 O -0.465 6.465 12 N -0.373 5.373 13 C -0.006 4.006 14 C 0.083 3.917 15 O -0.363 6.363 16 C -0.160 4.160 17 C 0.035 3.965 18 N -0.349 5.349 19 C -0.367 4.367 20 H 0.102 0.898 21 C -0.262 4.262 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.189 1.189 25 H -0.221 1.221 26 H -0.218 1.218 27 C -0.012 4.012 28 C -0.182 4.182 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.249 0.751 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.235 0.765 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.003 0.997 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.054 0.946 52 H 0.108 0.892 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.886 13.160 -6.911 30.722 hybrid contribution 0.140 -1.359 -0.162 1.376 sum -26.746 11.800 -7.073 30.077 Atomic orbital electron populations 1.21737 0.92135 1.02585 1.02649 1.22134 0.97085 0.95961 0.94785 1.21759 1.00512 0.94662 1.02311 1.23784 0.83730 0.97839 0.97232 1.88855 1.30327 1.86439 1.25408 1.22801 0.94550 0.98993 0.81606 0.90206 1.21473 0.92690 0.99686 0.99575 1.21664 0.90599 1.03039 1.01658 1.21333 0.85728 0.80423 0.82488 1.90680 1.86556 1.33710 1.35579 1.45956 1.08472 1.40706 1.42168 1.21733 0.82982 0.99030 0.96860 1.22202 0.94207 0.92179 0.83086 1.86590 1.42337 1.90261 1.17066 1.22905 0.95723 0.98897 0.98446 1.21654 0.90529 0.85488 0.98878 1.44708 1.06779 1.04512 1.78879 1.19509 0.96027 0.83765 1.37436 0.89774 1.25681 0.95513 1.02593 1.02417 1.70057 1.00849 1.34508 1.54487 0.84951 0.77770 0.79350 0.76886 1.18858 1.22080 1.21843 1.22109 0.89839 0.91565 0.97701 1.23144 0.97385 0.99387 0.98307 0.91986 0.91655 0.91750 0.93648 0.91659 0.92188 0.91158 0.88691 0.90525 0.92352 0.87118 0.86696 0.75140 0.90684 0.91312 0.76514 0.89707 0.89598 0.90703 0.99744 0.94319 0.94432 0.94564 0.89249 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 8.55 71.98 0.62 -0.35 16 2 C -0.10 -1.06 0.99 -50.88 -0.05 -1.11 16 3 C -0.14 -1.60 8.53 71.98 0.61 -0.99 16 4 C 0.05 0.60 6.63 72.66 0.48 1.08 16 5 O -0.39 -6.62 10.82 -148.98 -1.61 -8.23 16 6 C 0.08 1.11 3.41 30.96 0.11 1.22 16 7 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 8 C -0.10 -1.70 3.99 30.59 0.12 -1.58 16 9 C -0.13 -2.18 5.62 29.85 0.17 -2.02 16 10 C 0.51 12.41 7.83 87.66 0.69 13.10 16 11 O -0.59 -19.07 15.98 -3.03 -0.05 -19.12 16 12 N -0.72 -16.28 5.13 -463.06 -2.38 -18.66 16 13 C 0.12 3.32 4.80 86.38 0.41 3.74 16 14 C 0.12 4.11 0.93 -9.61 -0.01 4.10 16 15 O -0.56 -17.55 13.10 -148.98 -1.95 -19.50 16 16 C -0.12 -4.64 6.26 31.99 0.20 -4.43 16 17 C 0.16 8.09 5.88 86.86 0.51 8.60 16 18 N -0.62 -31.92 3.39 -691.96 -2.35 -34.27 16 19 C -0.24 -13.29 10.27 84.03 0.86 -12.43 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 22 N -0.95 -57.12 10.09 21.65 0.22 -56.90 16 23 Si 0.98 45.60 29.55 68.60 2.03 47.62 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 27 C 0.11 4.39 5.76 86.73 0.50 4.89 16 28 C -0.14 -1.69 5.80 31.58 0.18 -1.51 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.40 8.09 -2.39 -0.02 0.38 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.69 8.01 -2.39 -0.02 0.67 16 36 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 37 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.11 1.67 7.91 -2.39 -0.02 1.65 16 40 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.41 7.31 7.47 -92.71 -0.69 6.62 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.07 2.09 8.03 -2.39 -0.02 2.08 16 44 H 0.39 8.56 8.44 -74.05 -0.62 7.93 16 45 H 0.08 3.00 8.14 -2.39 -0.02 2.99 16 46 H 0.09 3.11 7.96 -2.39 -0.02 3.09 16 47 H 0.08 4.29 5.87 -2.39 -0.01 4.27 16 48 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 50 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 51 H 0.04 1.32 8.07 -2.39 -0.02 1.30 16 52 H 0.09 0.81 7.86 -2.38 -0.02 0.79 16 53 H 0.08 0.98 7.43 -2.39 -0.02 0.96 16 Total: -1.00 -73.91 414.92 -0.65 -74.56 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.43 Total: 25.68 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.87 Total: 8.82 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -4.51 Total: -109.83 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -3.61 Total: -46.85 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.91 -0.65 -74.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699904272.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.451 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds