Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.90495 * 2 1 4 4 C 1.54379 * 110.84889 * 123.58237 * 2 1 3 5 5 O 1.43235 * 107.58786 * 139.55240 * 4 2 1 6 6 C 1.43640 * 109.97200 * 1.70756 * 5 4 2 7 7 H 1.09009 * 110.30777 * 94.59154 * 6 5 4 8 8 C 1.52996 * 110.31246 * 216.65607 * 6 5 4 9 9 C 1.50707 * 109.47373 * 293.55342 * 8 6 5 10 10 O 1.21279 * 119.99700 * 359.97438 * 9 8 6 11 11 N 1.34771 * 120.00146 * 179.97438 * 9 8 6 12 12 C 1.46493 * 120.00068 * 175.09741 * 11 9 8 13 13 C 1.52996 * 109.49829 * 302.72638 * 12 11 9 14 14 O 1.42893 * 109.47279 * 300.70423 * 13 12 11 15 15 C 1.53037 * 109.49985 * 62.79459 * 12 11 9 16 16 C 1.53037 * 109.54130 * 58.58447 * 15 12 11 17 17 C 1.53193 * 109.31206 * 61.36435 * 16 15 12 18 18 N 1.46918 * 108.78002 * 305.36995 * 17 16 15 19 19 C 1.36943 * 120.63445 * 233.58473 * 18 17 16 20 20 H 1.08002 * 119.99456 * 31.75972 * 19 18 17 21 21 C 1.38801 * 119.99878 * 211.75444 * 19 18 17 22 22 N 1.31621 * 120.00740 * 11.14945 * 21 19 18 23 23 Si 1.86804 * 119.99964 * 191.14679 * 21 19 18 24 24 H 1.48504 * 109.46910 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47256 * 119.99922 * 23 21 19 26 26 H 1.48503 * 109.47301 * 240.00668 * 23 21 19 27 27 C 1.46927 * 118.74012 * 53.60394 * 18 17 16 28 28 C 1.54937 * 105.13803 * 335.57693 * 6 5 4 29 29 H 1.08993 * 109.47332 * 297.86880 * 1 2 3 30 30 H 1.09005 * 109.47338 * 57.87387 * 1 2 3 31 31 H 1.09008 * 109.46764 * 177.86698 * 1 2 3 32 32 H 1.09005 * 109.47283 * 182.12931 * 3 2 1 33 33 H 1.08999 * 109.47416 * 302.12713 * 3 2 1 34 34 H 1.08998 * 109.47306 * 62.13143 * 3 2 1 35 35 H 1.09004 * 109.82862 * 20.03392 * 4 2 1 36 36 H 1.09003 * 109.90413 * 259.10894 * 4 2 1 37 37 H 1.09001 * 109.47416 * 173.54813 * 8 6 5 38 38 H 1.09001 * 109.47042 * 53.54807 * 8 6 5 39 39 H 0.97003 * 119.99939 * 354.81768 * 11 9 8 40 40 H 1.08997 * 109.47087 * 60.70577 * 13 12 11 41 41 H 1.09002 * 109.47352 * 180.70311 * 13 12 11 42 42 H 0.96703 * 114.00089 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.46825 * 178.60664 * 15 12 11 44 44 H 1.09003 * 109.46151 * 298.56682 * 15 12 11 45 45 H 1.09001 * 109.50176 * 181.32279 * 16 15 12 46 46 H 1.09009 * 109.50056 * 301.38630 * 16 15 12 47 47 H 1.08998 * 109.58313 * 65.15948 * 17 16 15 48 48 H 1.08998 * 109.58813 * 185.58031 * 17 16 15 49 49 H 0.96997 * 120.00419 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.59398 * 186.60904 * 27 18 17 51 51 H 1.09006 * 109.58615 * 66.17733 * 27 18 17 52 52 H 1.09001 * 111.12817 * 154.36165 * 28 6 5 53 53 H 1.09006 * 111.12640 * 278.52111 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0760 1.4293 0.0000 4 6 2.0795 -0.7980 1.2019 5 8 3.2045 -1.5551 0.7408 6 6 3.4465 -1.2782 -0.6477 7 1 4.1949 -0.4925 -0.7520 8 6 3.9051 -2.5464 -1.3702 9 6 5.2562 -2.9618 -0.8472 10 8 5.7989 -2.3075 0.0178 11 7 5.8612 -4.0603 -1.3408 12 6 7.2189 -4.4041 -0.9113 13 6 8.1604 -3.2359 -1.2105 14 8 8.1458 -2.9593 -2.6123 15 6 7.2220 -4.6905 0.5920 16 6 6.2550 -5.8369 0.8967 17 6 6.7187 -7.0993 0.1631 18 7 6.8580 -6.7912 -1.2667 19 6 6.2215 -7.5531 -2.2099 20 1 5.2715 -8.0132 -1.9811 21 6 6.7972 -7.7339 -3.4599 22 7 8.0429 -7.3645 -3.6706 23 14 5.8041 -8.5015 -4.8434 24 1 4.4405 -8.8260 -4.3529 25 1 5.7080 -7.5439 -5.9742 26 1 6.4740 -9.7446 -5.3030 27 6 7.6936 -5.6503 -1.6654 28 6 2.0828 -0.8028 -1.2090 29 1 -0.3633 0.4803 0.9084 30 1 -0.3634 0.5465 -0.8703 31 1 -0.3633 -1.0270 -0.0383 32 1 3.1650 1.4023 -0.0382 33 1 1.6951 1.9638 -0.8703 34 1 1.7569 1.9401 0.9084 35 1 1.3108 -1.4714 1.5811 36 1 2.3925 -0.1132 1.9901 37 1 3.9743 -2.3503 -2.4402 38 1 3.1856 -3.3458 -1.1931 39 1 5.3962 -4.6254 -1.9774 40 1 7.8300 -2.3534 -0.6626 41 1 9.1728 -3.4969 -0.9022 42 1 8.7213 -2.2279 -2.8750 43 1 8.2274 -4.9703 0.9065 44 1 6.9081 -3.7975 1.1325 45 1 6.2401 -6.0247 1.9703 46 1 5.2537 -5.5674 0.5606 47 1 7.6801 -7.4218 0.5627 48 1 5.9813 -7.8909 0.2961 49 1 8.4452 -7.4912 -4.5440 50 1 7.5995 -5.4858 -2.7387 51 1 8.7346 -5.8546 -1.4148 52 1 2.2186 -0.1597 -2.0786 53 1 1.4387 -1.6497 -1.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699998063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -143.098395 kcal Electronic energy + Delta-G solvation = -32485.406177 eV Core-core repulsion = 28356.238706 eV Total energy + Delta-G solvation = -4129.167471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50459 -40.72152 -38.80168 -37.35378 -35.50012 -35.27697 -34.20215 -33.28056 -31.90063 -31.28808 -28.30648 -28.11093 -27.30521 -26.81554 -26.63466 -23.98774 -23.09456 -22.11073 -21.31583 -20.27129 -20.02044 -18.78421 -18.18914 -18.03780 -17.46449 -16.98290 -16.51713 -16.27640 -16.03935 -15.76410 -15.67692 -15.30891 -15.05988 -14.83372 -14.73252 -14.40106 -14.28128 -14.12619 -14.09297 -13.93939 -13.60288 -13.49232 -13.07937 -12.87244 -12.81612 -12.74443 -12.72496 -12.53237 -12.49627 -12.27884 -12.17466 -11.93015 -11.69329 -11.66762 -11.62796 -11.47348 -11.38123 -11.17147 -10.99831 -10.54118 -10.38814 -10.27082 -9.71062 -8.59643 -7.82677 -5.34744 1.49331 1.51711 1.61347 1.90127 2.42647 2.53428 2.93596 3.32806 3.35531 3.41146 3.67724 3.73422 3.86182 3.92003 4.09331 4.11582 4.19815 4.21489 4.26640 4.36426 4.36924 4.46844 4.49841 4.62017 4.63973 4.69903 4.75683 4.79543 4.82009 4.85531 4.85885 4.91112 4.96347 4.99180 5.02202 5.04917 5.13780 5.16675 5.19388 5.21019 5.32105 5.35703 5.45598 5.49782 5.66237 5.78255 5.85663 6.22005 6.44931 6.87859 6.93789 7.18141 7.51054 7.86183 8.41904 9.22735 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.003324 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.360820 B = 8422.639588 C = 9036.534867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C -0.137 4.137 4 C 0.049 3.951 5 O -0.395 6.395 6 C 0.103 3.897 7 H 0.059 0.941 8 C -0.139 4.139 9 C 0.512 3.488 10 O -0.570 6.570 11 N -0.693 5.693 12 C 0.161 3.839 13 C 0.076 3.924 14 O -0.576 6.576 15 C -0.114 4.114 16 C -0.114 4.114 17 C 0.141 3.859 18 N -0.604 5.604 19 C -0.261 4.261 20 H 0.067 0.933 21 C -0.042 4.042 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.264 1.264 25 H -0.290 1.290 26 H -0.297 1.297 27 C 0.195 3.805 28 C -0.137 4.137 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.402 0.598 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.388 0.612 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.013 0.987 48 H 0.055 0.945 49 H 0.249 0.751 50 H 0.071 0.929 51 H 0.000 1.000 52 H 0.099 0.901 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 16.471 5.316 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.096 4.096 3 C -0.194 4.194 4 C -0.027 4.027 5 O -0.315 6.315 6 C 0.045 3.955 7 H 0.077 0.923 8 C -0.179 4.179 9 C 0.300 3.700 10 O -0.450 6.450 11 N -0.342 5.342 12 C 0.073 3.927 13 C -0.003 4.003 14 O -0.383 6.383 15 C -0.152 4.152 16 C -0.153 4.153 17 C 0.015 3.985 18 N -0.327 5.327 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.238 4.238 22 N -0.576 5.576 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.217 1.217 26 H -0.224 1.224 27 C 0.069 3.931 28 C -0.175 4.175 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.236 0.764 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.236 0.764 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.031 0.969 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.089 0.911 51 H 0.018 0.982 52 H 0.118 0.882 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.379 16.249 5.906 21.263 hybrid contribution 0.427 -0.427 -1.076 1.234 sum -11.952 15.822 4.830 20.408 Atomic orbital electron populations 1.21728 0.91641 1.02506 1.02998 1.22102 0.97639 0.96026 0.93795 1.21822 1.00373 0.94195 1.03047 1.23420 0.88219 0.94338 0.96765 1.88532 1.49831 1.67290 1.25856 1.22607 0.97019 0.94766 0.81083 0.92268 1.21929 0.93998 0.99604 1.02330 1.20916 0.87747 0.79968 0.81366 1.90573 1.67211 1.55133 1.32123 1.45855 1.15798 1.26422 1.46142 1.20961 0.82209 0.94698 0.94875 1.22450 0.97928 0.97770 0.82193 1.86530 1.70543 1.57596 1.23619 1.21679 0.99824 0.99124 0.94602 1.21761 0.98501 0.95422 0.99588 1.21079 0.97541 0.95366 0.84479 1.44215 1.56769 1.30646 1.01030 1.19455 1.00273 1.25801 0.93596 0.91529 1.25874 0.95996 1.00284 1.01646 1.70139 1.12886 1.52112 1.22431 0.85237 0.78660 0.77286 0.79404 1.18850 1.21701 1.22404 1.20598 0.90764 0.83254 0.98492 1.23442 0.94653 1.00807 0.98583 0.91617 0.91053 0.92237 0.93730 0.90816 0.91573 0.91076 0.91900 0.85890 0.87795 0.76369 0.92322 0.93262 0.76430 0.91985 0.91263 0.90874 0.93198 0.96896 0.92619 0.94192 0.91062 0.98196 0.88223 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.51 71.98 0.61 -0.87 16 2 C -0.10 -1.48 0.95 -50.92 -0.05 -1.53 16 3 C -0.14 -1.93 8.46 71.98 0.61 -1.33 16 4 C 0.05 1.03 6.99 72.45 0.51 1.54 16 5 O -0.40 -11.63 10.41 -137.64 -1.43 -13.06 16 6 C 0.10 2.53 2.62 31.26 0.08 2.61 16 7 H 0.06 1.62 7.61 -2.38 -0.02 1.60 16 8 C -0.14 -3.59 5.45 29.85 0.16 -3.43 16 9 C 0.51 17.67 7.14 87.66 0.63 18.30 16 10 O -0.57 -22.42 11.80 8.31 0.10 -22.32 16 11 N -0.69 -25.81 4.04 -422.58 -1.71 -27.52 16 12 C 0.16 6.39 0.45 3.68 0.00 6.39 16 13 C 0.08 2.75 5.68 71.98 0.41 3.16 16 14 O -0.58 -20.55 12.98 -148.98 -1.93 -22.49 16 15 C -0.11 -4.27 4.51 30.62 0.14 -4.14 16 16 C -0.11 -4.19 5.93 30.67 0.18 -4.01 16 17 C 0.14 5.95 6.52 86.36 0.56 6.51 16 18 N -0.60 -29.59 2.85 -699.10 -1.99 -31.58 16 19 C -0.26 -13.79 9.57 84.03 0.80 -12.98 16 20 H 0.07 3.43 7.85 -2.91 -0.02 3.41 16 21 C -0.04 -2.26 5.03 84.86 0.43 -1.84 16 22 N -0.93 -53.98 11.11 21.65 0.24 -53.74 16 23 Si 0.97 43.59 29.57 68.60 2.03 45.62 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 27 C 0.20 9.39 3.75 86.37 0.32 9.72 16 28 C -0.14 -2.28 5.53 32.05 0.18 -2.11 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.69 8.12 -2.38 -0.02 0.67 16 32 H 0.04 0.77 7.50 -2.38 -0.02 0.76 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.38 7.81 -2.39 -0.02 1.36 16 36 H 0.06 1.30 7.84 -2.39 -0.02 1.28 16 37 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 38 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 39 H 0.40 15.65 8.43 -92.71 -0.78 14.87 16 40 H 0.06 2.15 6.17 -2.39 -0.01 2.14 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.39 9.70 9.12 -74.06 -0.68 9.03 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.07 2.69 6.25 -2.39 -0.01 2.67 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.05 1.92 7.53 -2.38 -0.02 1.90 16 47 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 2.28 7.93 -2.39 -0.02 2.27 16 49 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 50 H 0.07 3.91 5.89 -2.39 -0.01 3.90 16 51 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 52 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 53 H 0.09 1.36 7.94 -2.38 -0.02 1.34 16 Total: -1.00 -68.67 403.09 0.33 -68.34 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -0.55 Total: 40.75 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 5.58 Total: 16.00 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.45 Total: -112.84 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -3.27 Total: -57.87 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.67 0.33 -68.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699998063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.755 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds