Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.46170 * 2 1 4 4 C 1.54489 * 110.50916 * 237.24997 * 2 1 3 5 5 O 1.44426 * 104.80024 * 265.33631 * 4 2 1 6 6 C 1.44426 * 105.27686 * 319.48483 * 5 4 2 7 7 H 1.08996 * 110.47117 * 281.63736 * 6 5 4 8 8 C 1.52995 * 110.37046 * 159.34317 * 6 5 4 9 9 C 1.50704 * 109.47152 * 69.62474 * 8 6 5 10 10 O 1.21279 * 119.99474 * 359.97438 * 9 8 6 11 11 N 1.34771 * 120.00101 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99924 * 185.08622 * 11 9 8 13 13 C 1.52998 * 109.52477 * 298.14976 * 12 11 9 14 14 O 1.42904 * 109.47265 * 305.43444 * 13 12 11 15 15 C 1.53035 * 109.49824 * 58.23094 * 12 11 9 16 16 C 1.53043 * 109.53794 * 58.59063 * 15 12 11 17 17 C 1.53188 * 109.31605 * 61.36303 * 16 15 12 18 18 N 1.46930 * 108.77473 * 305.36526 * 17 16 15 19 19 C 1.36931 * 120.63204 * 233.62867 * 18 17 16 20 20 H 1.07999 * 119.99837 * 150.06526 * 19 18 17 21 21 C 1.38812 * 120.00101 * 330.06780 * 19 18 17 22 22 N 1.31623 * 119.99961 * 348.07471 * 21 19 18 23 23 Si 1.86807 * 120.00168 * 168.08391 * 21 19 18 24 24 H 1.48503 * 109.46750 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46910 * 119.99586 * 23 21 19 26 26 H 1.48493 * 109.46973 * 239.99780 * 23 21 19 27 27 C 1.46927 * 118.73417 * 53.61134 * 18 17 16 28 28 C 1.54487 * 104.80072 * 40.51500 * 6 5 4 29 29 H 1.09002 * 109.46952 * 297.39666 * 1 2 3 30 30 H 1.09000 * 109.47370 * 57.38754 * 1 2 3 31 31 H 1.08997 * 109.47399 * 177.38920 * 1 2 3 32 32 H 1.08998 * 109.47728 * 182.60283 * 3 2 1 33 33 H 1.09001 * 109.47634 * 302.61233 * 3 2 1 34 34 H 1.09003 * 109.46737 * 62.60455 * 3 2 1 35 35 H 1.09002 * 110.36914 * 24.16572 * 4 2 1 36 36 H 1.08993 * 110.36971 * 146.39263 * 4 2 1 37 37 H 1.08996 * 109.47893 * 309.62222 * 8 6 5 38 38 H 1.09008 * 109.47174 * 189.62080 * 8 6 5 39 39 H 0.96997 * 120.00554 * 5.08795 * 11 9 8 40 40 H 1.09002 * 109.47376 * 65.43728 * 13 12 11 41 41 H 1.09000 * 109.47570 * 185.43817 * 13 12 11 42 42 H 0.96700 * 114.00113 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.46090 * 178.60737 * 15 12 11 44 44 H 1.08997 * 109.46152 * 298.56774 * 15 12 11 45 45 H 1.08998 * 109.49705 * 181.31674 * 16 15 12 46 46 H 1.08998 * 109.49302 * 301.41128 * 16 15 12 47 47 H 1.09000 * 109.58903 * 65.15104 * 17 16 15 48 48 H 1.09002 * 109.58925 * 185.43788 * 17 16 15 49 49 H 0.96996 * 120.00203 * 180.02562 * 22 21 19 50 50 H 1.09005 * 109.58574 * 186.60228 * 27 18 17 51 51 H 1.08993 * 109.59113 * 66.17854 * 27 18 17 52 52 H 1.09008 * 110.50895 * 94.66496 * 28 6 5 53 53 H 1.08998 * 110.50653 * 217.23657 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0648 1.4334 0.0000 4 6 2.0712 -0.7828 -1.2170 5 8 2.3068 -2.1187 -0.7212 6 6 2.8757 -1.9416 0.5944 7 1 3.9304 -1.6765 0.5212 8 6 2.7040 -3.2151 1.4247 9 6 3.5910 -4.2998 0.8701 10 8 4.2912 -4.0763 -0.0946 11 7 3.6063 -5.5181 1.4461 12 6 4.5484 -6.5378 0.9783 13 6 4.2605 -6.8658 -0.4881 14 8 2.8884 -7.2383 -0.6324 15 6 5.9791 -6.0114 1.1125 16 6 6.2573 -5.6522 2.5740 17 6 6.1214 -6.9089 3.4393 18 7 4.7982 -7.5033 3.2054 19 6 3.9584 -7.7710 4.2533 20 1 2.8885 -7.7371 4.1101 21 6 4.4823 -8.0861 5.4995 22 7 5.7640 -8.3581 5.6251 23 14 3.3682 -8.1242 6.9986 24 1 1.9809 -7.7833 6.5930 25 1 3.3898 -9.4832 7.5969 26 1 3.8484 -7.1359 7.9974 27 6 4.3932 -7.8047 1.8255 28 6 2.0713 -0.7799 1.2190 29 1 -0.3633 0.4729 0.9124 30 1 -0.3634 0.5539 -0.8656 31 1 -0.3634 -1.0266 -0.0468 32 1 3.1536 1.4151 -0.0467 33 1 1.6730 1.9675 -0.8656 34 1 1.7488 1.9391 0.9125 35 1 1.3309 -0.7999 -2.0168 36 1 3.0012 -0.3381 -1.5710 37 1 1.6641 -3.5391 1.3824 38 1 2.9800 -3.0139 2.4599 39 1 2.9934 -5.7199 2.1703 40 1 4.4658 -5.9898 -1.1035 41 1 4.8966 -7.6913 -0.8076 42 1 2.6342 -7.4599 -1.5387 43 1 6.6807 -6.7796 0.7875 44 1 6.0993 -5.1239 0.4913 45 1 7.2684 -5.2555 2.6650 46 1 5.5402 -4.9019 2.9070 47 1 6.8968 -7.6252 3.1678 48 1 6.2232 -6.6413 4.4910 49 1 6.1300 -8.5785 6.4958 50 1 3.3521 -8.1276 1.8125 51 1 5.0277 -8.5939 1.4225 52 1 1.2489 -1.1654 1.8217 53 1 2.7215 -0.1463 1.8223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699998065.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -142.717092 kcal Electronic energy + Delta-G solvation = -32270.169099 eV Core-core repulsion = 28141.018162 eV Total energy + Delta-G solvation = -4129.150936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52317 -40.69540 -38.81748 -37.37310 -35.54232 -35.34431 -33.95690 -33.13902 -32.32525 -31.26730 -28.26966 -28.09549 -27.28641 -26.69965 -26.56910 -23.97408 -23.19914 -22.25322 -21.28716 -20.29398 -20.05257 -18.67121 -18.25596 -18.09626 -17.00191 -16.91843 -16.73146 -16.44978 -16.24028 -15.86875 -15.67286 -15.20414 -15.01237 -14.86192 -14.67683 -14.52276 -14.31374 -14.21780 -14.07963 -13.82929 -13.47467 -13.42939 -13.14321 -12.87754 -12.84642 -12.80623 -12.70496 -12.48060 -12.40331 -12.24036 -12.15104 -11.92724 -11.76853 -11.65446 -11.55874 -11.48761 -11.45881 -11.19461 -10.99354 -10.56065 -10.54154 -10.29040 -9.73809 -8.63094 -7.83218 -5.33321 1.49066 1.51433 1.60991 1.88132 2.38195 2.52896 3.00543 3.32609 3.33543 3.51201 3.65470 3.71788 3.86838 3.93360 4.05139 4.08437 4.12027 4.23396 4.27933 4.36125 4.42014 4.46247 4.54856 4.61095 4.62940 4.68802 4.74635 4.79882 4.81399 4.83474 4.88817 4.89549 4.93978 5.01871 5.02547 5.07291 5.07575 5.14548 5.19837 5.26710 5.29047 5.32974 5.44037 5.55638 5.66957 5.75808 5.82690 6.00060 6.42371 6.83120 6.92312 7.17636 7.48636 7.85327 8.39407 9.22634 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003241 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.600178 B = 8638.258440 C = 9683.448392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 C -0.135 4.135 4 C 0.045 3.955 5 O -0.387 6.387 6 C 0.096 3.904 7 H 0.057 0.943 8 C -0.134 4.134 9 C 0.514 3.486 10 O -0.570 6.570 11 N -0.693 5.693 12 C 0.171 3.829 13 C 0.077 3.923 14 O -0.577 6.577 15 C -0.112 4.112 16 C -0.122 4.122 17 C 0.179 3.821 18 N -0.600 5.600 19 C -0.254 4.254 20 H 0.071 0.929 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.297 1.297 26 H -0.292 1.292 27 C 0.154 3.846 28 C -0.140 4.140 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.403 0.597 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.390 0.610 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.050 0.950 47 H -0.006 1.006 48 H 0.059 0.941 49 H 0.248 0.752 50 H 0.060 0.940 51 H 0.024 0.976 52 H 0.086 0.914 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 16.897 -11.903 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.031 4.031 5 O -0.306 6.306 6 C 0.038 3.962 7 H 0.075 0.925 8 C -0.173 4.173 9 C 0.302 3.698 10 O -0.451 6.451 11 N -0.342 5.342 12 C 0.083 3.917 13 C -0.002 4.002 14 O -0.384 6.384 15 C -0.151 4.151 16 C -0.161 4.161 17 C 0.054 3.946 18 N -0.323 5.323 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.244 4.244 22 N -0.583 5.583 23 Si 0.796 3.204 24 H -0.187 1.187 25 H -0.225 1.225 26 H -0.219 1.219 27 C 0.027 3.973 28 C -0.177 4.177 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.237 0.763 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.238 0.762 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.012 0.988 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.078 0.922 51 H 0.042 0.958 52 H 0.104 0.896 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.821 16.896 -11.890 22.091 hybrid contribution -0.164 -0.670 0.724 1.000 sum -7.985 16.226 -11.166 21.254 Atomic orbital electron populations 1.21820 0.92710 1.01793 1.02733 1.21938 0.97199 0.96412 0.94115 1.21825 1.00744 0.93708 1.02959 1.23672 1.00052 0.82465 0.96940 1.89198 1.82853 1.26930 1.31621 1.22630 0.97026 0.93712 0.82848 0.92466 1.21819 1.01300 0.92968 1.01263 1.20857 0.82714 0.83436 0.82794 1.90577 1.44715 1.82083 1.27683 1.45771 1.38506 1.11971 1.37950 1.20757 0.89236 0.89321 0.92384 1.22463 0.83026 0.98794 0.95952 1.86444 1.26689 1.90622 1.34631 1.21654 0.94782 1.01330 0.97284 1.21914 1.00201 0.98826 0.95145 1.20606 0.85266 0.90582 0.98193 1.44193 1.16116 1.70934 1.01031 1.19517 0.89619 1.40095 0.89215 0.91152 1.25843 0.97324 0.99615 1.01592 1.70160 1.13406 1.51547 1.23141 0.85207 0.79085 0.76491 0.79646 1.18700 1.22478 1.21899 1.21087 0.98680 0.92609 0.84898 1.23170 1.00493 0.96098 0.97980 0.91449 0.91584 0.93250 0.92696 0.91504 0.91299 0.88693 0.92577 0.87478 0.86011 0.76260 0.92709 0.92530 0.76164 0.91691 0.91168 0.91949 0.93140 0.98769 0.92282 0.94243 0.92187 0.95793 0.89553 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.28 71.98 0.60 -1.18 16 2 C -0.10 -1.48 1.05 -51.17 -0.05 -1.53 16 3 C -0.14 -1.60 8.32 71.98 0.60 -1.00 16 4 C 0.05 0.91 6.74 72.49 0.49 1.40 16 5 O -0.39 -10.82 10.92 -142.68 -1.56 -12.37 16 6 C 0.10 2.31 2.74 31.10 0.09 2.40 16 7 H 0.06 1.56 7.90 -2.39 -0.02 1.54 16 8 C -0.13 -3.33 5.33 29.85 0.16 -3.17 16 9 C 0.51 16.77 7.13 87.66 0.62 17.39 16 10 O -0.57 -21.45 11.93 3.27 0.04 -21.41 16 11 N -0.69 -23.54 3.94 -422.58 -1.67 -25.20 16 12 C 0.17 6.11 0.45 3.68 0.00 6.12 16 13 C 0.08 2.44 5.66 71.98 0.41 2.85 16 14 O -0.58 -17.38 13.08 -148.98 -1.95 -19.33 16 15 C -0.11 -4.04 4.45 30.62 0.14 -3.90 16 16 C -0.12 -4.75 5.93 30.67 0.18 -4.57 16 17 C 0.18 8.57 5.27 86.36 0.45 9.02 16 18 N -0.60 -28.92 2.90 -699.10 -2.03 -30.95 16 19 C -0.25 -13.28 9.59 84.03 0.81 -12.48 16 20 H 0.07 3.55 7.86 -2.91 -0.02 3.52 16 21 C -0.05 -2.62 5.03 84.86 0.43 -2.19 16 22 N -0.94 -54.18 11.01 21.65 0.24 -53.94 16 23 Si 0.97 43.52 29.57 68.60 2.03 45.55 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 27 C 0.15 6.37 5.06 86.36 0.44 6.81 16 28 C -0.14 -2.38 5.92 31.61 0.19 -2.19 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.69 8.09 -2.39 -0.02 0.68 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 1.68 7.87 -2.39 -0.02 1.66 16 36 H 0.06 1.10 7.83 -2.39 -0.02 1.09 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.40 13.90 8.47 -92.71 -0.79 13.11 16 40 H 0.05 1.87 6.31 -2.39 -0.02 1.85 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.39 8.00 9.12 -74.06 -0.68 7.33 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.07 2.57 6.26 -2.39 -0.01 2.56 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.05 1.99 7.49 -2.39 -0.02 1.97 16 47 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.06 3.19 6.03 -2.39 -0.01 3.18 16 49 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 50 H 0.06 2.54 7.79 -2.38 -0.02 2.52 16 51 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.09 1.35 7.46 -2.38 -0.02 1.33 16 53 H 0.09 1.32 7.74 -2.39 -0.02 1.30 16 Total: -1.00 -67.57 403.89 0.08 -67.48 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.56 Total: 36.40 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.54 Total: 13.76 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.46 Total: -110.09 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -3.47 Total: -53.11 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.57 0.08 -67.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699998065.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.234 kcal (2) G-P(sol) polarization free energy of solvation -67.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds