Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.54085 * 2 1 4 4 C 1.54096 * 110.48673 * 122.61033 * 2 1 3 5 5 O 1.43748 * 107.29239 * 120.70595 * 4 2 1 6 6 C 1.44378 * 106.97610 * 333.49453 * 5 4 2 7 7 H 1.09004 * 110.61661 * 281.39759 * 6 5 4 8 8 C 1.53002 * 110.62330 * 158.55943 * 6 5 4 9 9 C 1.50705 * 109.46918 * 68.57606 * 8 6 5 10 10 O 1.21275 * 119.99960 * 0.02562 * 9 8 6 11 11 N 1.34772 * 119.99547 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99927 * 184.67666 * 11 9 8 13 13 C 1.52997 * 109.49829 * 57.83801 * 12 11 9 14 14 O 1.42894 * 109.47357 * 55.48641 * 13 12 11 15 15 C 1.53041 * 109.49600 * 297.74552 * 12 11 9 16 16 C 1.53047 * 109.53631 * 301.41251 * 15 12 11 17 17 C 1.53189 * 109.30944 * 298.63429 * 16 15 12 18 18 N 1.46927 * 108.77787 * 54.63672 * 17 16 15 19 19 C 1.36937 * 120.63301 * 126.36652 * 18 17 16 20 20 H 1.07992 * 120.00358 * 209.68152 * 19 18 17 21 21 C 1.38816 * 119.99704 * 29.67715 * 19 18 17 22 22 N 1.31620 * 119.99934 * 11.43949 * 21 19 18 23 23 Si 1.86802 * 119.99880 * 191.43725 * 21 19 18 24 24 H 1.48498 * 109.47135 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46974 * 120.00235 * 23 21 19 26 26 H 1.48504 * 109.47194 * 240.00305 * 23 21 19 27 27 C 1.46928 * 118.73712 * 306.39108 * 18 17 16 28 28 C 1.54982 * 110.34525 * 237.37752 * 2 1 3 29 29 H 1.08990 * 109.47319 * 298.84192 * 1 2 3 30 30 H 1.09005 * 109.46587 * 58.83991 * 1 2 3 31 31 H 1.08997 * 109.46695 * 178.83734 * 1 2 3 32 32 H 1.08997 * 109.47147 * 181.15923 * 3 2 1 33 33 H 1.09001 * 109.46822 * 301.16422 * 3 2 1 34 34 H 1.09003 * 109.47028 * 61.15588 * 3 2 1 35 35 H 1.09000 * 109.88042 * 1.29092 * 4 2 1 36 36 H 1.08996 * 110.00869 * 240.20101 * 4 2 1 37 37 H 1.08998 * 109.46417 * 308.57771 * 8 6 5 38 38 H 1.08994 * 109.47127 * 188.57896 * 8 6 5 39 39 H 0.97004 * 120.00385 * 4.94217 * 11 9 8 40 40 H 1.08999 * 109.47214 * 175.48773 * 13 12 11 41 41 H 1.09004 * 109.47725 * 295.48938 * 13 12 11 42 42 H 0.96702 * 114.00989 * 179.97438 * 14 13 12 43 43 H 1.08999 * 109.46138 * 61.43146 * 15 12 11 44 44 H 1.08996 * 109.46150 * 181.39024 * 15 12 11 45 45 H 1.09004 * 109.49405 * 178.68313 * 16 15 12 46 46 H 1.08996 * 109.52463 * 58.60334 * 16 15 12 47 47 H 1.09007 * 109.58676 * 294.84714 * 17 16 15 48 48 H 1.09007 * 109.58583 * 174.42779 * 17 16 15 49 49 H 0.97002 * 119.99780 * 179.97438 * 22 21 19 50 50 H 1.09010 * 109.58497 * 293.81772 * 27 18 17 51 51 H 1.09002 * 109.58657 * 173.39684 * 27 18 17 52 52 H 1.08998 * 110.84914 * 143.90246 * 28 2 1 53 53 H 1.09004 * 111.04741 * 20.23882 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0669 1.4328 0.0000 4 6 2.0694 -0.7779 1.2159 5 8 2.8754 -1.8555 0.7105 6 6 2.3782 -2.1715 -0.6076 7 1 1.4715 -2.7729 -0.5418 8 6 3.4466 -2.8986 -1.4266 9 6 3.6772 -4.2703 -0.8464 10 8 3.0485 -4.6309 0.1260 11 7 4.5820 -5.0961 -1.4082 12 6 4.7336 -6.4651 -0.9090 13 6 3.3935 -7.1966 -1.0095 14 8 2.9199 -7.1404 -2.3565 15 6 5.1880 -6.4286 0.5519 16 6 6.5119 -5.6681 0.6572 17 6 7.5810 -6.3960 -0.1637 18 7 7.0892 -6.5638 -1.5380 19 6 7.8342 -6.1331 -2.6031 20 1 7.3440 -5.8084 -3.5090 21 6 9.2196 -6.1138 -2.5185 22 7 9.8261 -6.7127 -1.5156 23 14 10.2232 -5.2378 -3.8281 24 1 9.3100 -4.6497 -4.8406 25 1 11.0251 -4.1586 -3.1977 26 1 11.1324 -6.2095 -4.4874 27 6 5.7825 -7.2020 -1.7476 28 6 2.0689 -0.7834 -1.2239 29 1 -0.3633 0.4957 0.9001 30 1 -0.3633 0.5318 -0.8795 31 1 -0.3632 -1.0274 -0.0209 32 1 3.1565 1.4125 -0.0208 33 1 1.6963 1.9596 -0.8794 34 1 1.7301 1.9470 0.9002 35 1 1.2391 -1.1778 1.7981 36 1 2.6767 -0.1216 1.8391 37 1 4.3763 -2.3305 -1.3967 38 1 3.1113 -2.9926 -2.4594 39 1 5.1356 -4.7829 -2.1406 40 1 3.5247 -8.2374 -0.7136 41 1 2.6688 -6.7198 -0.3494 42 1 2.0726 -7.5855 -2.4945 43 1 4.4317 -5.9263 1.1550 44 1 5.3244 -7.4471 0.9153 45 1 6.8231 -5.6223 1.7009 46 1 6.3828 -4.6569 0.2714 47 1 7.7767 -7.3739 0.2764 48 1 8.4983 -5.8072 -0.1731 49 1 10.7942 -6.6996 -1.4567 50 1 5.8315 -8.2457 -1.4368 51 1 5.5130 -7.1450 -2.8023 52 1 2.9754 -0.3198 -1.6128 53 1 1.3100 -0.8638 -2.0023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699998067.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -142.806915 kcal Electronic energy + Delta-G solvation = -32282.324045 eV Core-core repulsion = 28153.169214 eV Total energy + Delta-G solvation = -4129.154831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51444 -40.70428 -38.82669 -37.37290 -35.55840 -35.36039 -33.96918 -33.12847 -32.32501 -31.26116 -28.28850 -28.09826 -27.28755 -26.72567 -26.57909 -23.97015 -23.19567 -22.25418 -21.31100 -20.27013 -20.04119 -18.67517 -18.22668 -18.07192 -17.28116 -16.94183 -16.72437 -16.31619 -16.05839 -15.92327 -15.68956 -15.22292 -15.02441 -14.75250 -14.66957 -14.49863 -14.32221 -14.28217 -14.12301 -13.92284 -13.53111 -13.43962 -13.15550 -12.91864 -12.83313 -12.75467 -12.69889 -12.47168 -12.43807 -12.26003 -12.14854 -11.92945 -11.77453 -11.64702 -11.57005 -11.48256 -11.45701 -11.20722 -10.96777 -10.54426 -10.50492 -10.29941 -9.73923 -8.64027 -7.83220 -5.33673 1.48967 1.50813 1.60571 1.88711 2.38405 2.52618 2.97921 3.32296 3.33253 3.47345 3.66057 3.71202 3.87191 3.90177 4.06137 4.07399 4.13233 4.21671 4.27780 4.35660 4.39427 4.48014 4.55005 4.61102 4.62325 4.67894 4.76769 4.78835 4.80980 4.82857 4.86969 4.90376 4.92769 5.01539 5.04130 5.04861 5.07586 5.15335 5.19963 5.23041 5.30313 5.31529 5.44664 5.55778 5.66233 5.75129 5.82703 6.07658 6.42005 6.83694 6.94160 7.16862 7.49193 7.84943 8.38868 9.22541 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.003292 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.736592 B = 8502.550320 C = 9554.516651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.046 3.954 5 O -0.394 6.394 6 C 0.097 3.903 7 H 0.062 0.938 8 C -0.134 4.134 9 C 0.514 3.486 10 O -0.571 6.571 11 N -0.693 5.693 12 C 0.171 3.829 13 C 0.078 3.922 14 O -0.575 6.575 15 C -0.112 4.112 16 C -0.121 4.121 17 C 0.180 3.820 18 N -0.601 5.601 19 C -0.254 4.254 20 H 0.073 0.927 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.261 1.261 25 H -0.294 1.294 26 H -0.296 1.296 27 C 0.154 3.846 28 C -0.136 4.136 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.403 0.597 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.391 0.609 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.044 0.956 47 H -0.005 1.005 48 H 0.059 0.941 49 H 0.248 0.752 50 H 0.025 0.975 51 H 0.063 0.937 52 H 0.084 0.916 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 12.132 0.353 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.030 4.030 5 O -0.314 6.314 6 C 0.039 3.961 7 H 0.080 0.920 8 C -0.173 4.173 9 C 0.302 3.698 10 O -0.451 6.451 11 N -0.343 5.343 12 C 0.083 3.917 13 C -0.001 4.001 14 O -0.382 6.382 15 C -0.151 4.151 16 C -0.160 4.160 17 C 0.054 3.946 18 N -0.324 5.324 19 C -0.384 4.384 20 H 0.091 0.909 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.221 1.221 26 H -0.224 1.224 27 C 0.028 3.972 28 C -0.174 4.174 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.149 0.851 39 H 0.238 0.762 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.240 0.760 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.013 0.987 48 H 0.077 0.923 49 H 0.057 0.943 50 H 0.043 0.957 51 H 0.082 0.918 52 H 0.102 0.898 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.527 12.074 1.054 22.982 hybrid contribution 0.769 -0.225 -0.477 0.933 sum -18.758 11.849 0.577 22.194 Atomic orbital electron populations 1.21857 0.92463 1.01938 1.03024 1.21967 0.97159 0.96664 0.93934 1.21820 1.00671 0.93690 1.02904 1.23451 0.94789 0.88380 0.96428 1.88970 1.56772 1.53364 1.32265 1.22798 0.95173 0.95707 0.82376 0.91997 1.21803 1.01701 0.92293 1.01540 1.20881 0.78815 0.87149 0.83004 1.90580 1.50221 1.77094 1.27182 1.45802 1.38831 1.12219 1.37461 1.20757 0.94059 0.82621 0.94312 1.22393 0.94910 0.98802 0.83983 1.86448 1.43158 1.80946 1.27654 1.21670 0.97271 1.00517 0.95597 1.21894 0.95985 0.99032 0.99134 1.20609 0.95000 0.95696 0.83302 1.44209 1.17697 1.68338 1.02138 1.19546 0.88249 1.35539 0.95111 0.90914 1.25868 0.98220 1.00520 0.99963 1.70163 1.07985 1.46437 1.33765 0.85188 0.78611 0.77511 0.79017 1.18524 1.22106 1.22366 1.21098 0.84658 0.93535 0.97956 1.23357 1.02726 0.93415 0.97882 0.91700 0.90864 0.93108 0.92943 0.91092 0.91685 0.92841 0.89831 0.88082 0.85150 0.76219 0.92360 0.92620 0.75994 0.91291 0.91800 0.92417 0.93698 0.98681 0.92312 0.94274 0.95745 0.91844 0.89756 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.25 71.98 0.59 -1.10 16 2 C -0.10 -1.51 0.99 -51.13 -0.05 -1.56 16 3 C -0.13 -1.70 8.28 71.98 0.60 -1.10 16 4 C 0.05 1.00 7.03 72.35 0.51 1.50 16 5 O -0.39 -11.66 10.75 -141.24 -1.52 -13.18 16 6 C 0.10 2.31 2.77 31.28 0.09 2.40 16 7 H 0.06 1.60 7.96 -2.38 -0.02 1.58 16 8 C -0.13 -3.27 5.47 29.85 0.16 -3.10 16 9 C 0.51 16.71 7.17 87.66 0.63 17.33 16 10 O -0.57 -21.51 11.91 4.72 0.06 -21.46 16 11 N -0.69 -23.57 3.96 -422.59 -1.67 -25.24 16 12 C 0.17 6.10 0.45 3.68 0.00 6.10 16 13 C 0.08 2.38 5.62 71.98 0.40 2.78 16 14 O -0.58 -15.84 13.06 -148.98 -1.95 -17.79 16 15 C -0.11 -4.20 4.51 30.62 0.14 -4.06 16 16 C -0.12 -5.04 5.93 30.67 0.18 -4.86 16 17 C 0.18 8.86 5.27 86.36 0.46 9.31 16 18 N -0.60 -29.37 2.86 -699.08 -2.00 -31.37 16 19 C -0.25 -13.40 9.60 84.03 0.81 -12.59 16 20 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16 21 C -0.05 -2.76 5.05 84.86 0.43 -2.34 16 22 N -0.94 -54.96 10.96 21.65 0.24 -54.72 16 23 Si 0.97 43.98 29.57 68.60 2.03 46.01 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 27 C 0.15 6.36 5.06 86.36 0.44 6.80 16 28 C -0.14 -2.23 5.71 31.96 0.18 -2.05 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 1.14 7.69 -2.39 -0.02 1.12 16 36 H 0.08 1.67 7.70 -2.39 -0.02 1.66 16 37 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.40 13.96 8.43 -92.71 -0.78 13.17 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.80 6.32 -2.39 -0.02 1.78 16 42 H 0.39 6.86 9.12 -74.06 -0.68 6.19 16 43 H 0.07 2.68 6.22 -2.39 -0.01 2.66 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.04 1.94 7.53 -2.39 -0.02 1.92 16 47 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 48 H 0.06 3.28 5.99 -2.38 -0.01 3.27 16 49 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 50 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.06 2.64 7.76 -2.39 -0.02 2.62 16 52 H 0.08 1.33 7.78 -2.39 -0.02 1.31 16 53 H 0.10 1.25 7.87 -2.38 -0.02 1.23 16 Total: -1.00 -69.07 403.94 0.19 -68.89 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.56 Total: 35.39 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.56 Total: 13.48 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -3.44 Total: -111.34 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -3.41 Total: -52.42 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.07 0.19 -68.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699998067.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.921 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds