Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48500 * 109.47409 * 239.99608 * 3 2 1 5 5 H 1.48498 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46893 * 120.00238 * 3 2 1 7 7 C 1.38812 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00180 * 196.81234 * 7 2 1 9 9 N 1.36940 * 119.99822 * 16.81939 * 7 2 1 10 10 C 1.46927 * 120.62516 * 209.78901 * 9 7 2 11 11 C 1.53194 * 108.76959 * 233.58288 * 10 9 7 12 12 C 1.53035 * 109.31538 * 305.36456 * 11 10 9 13 13 C 1.53036 * 109.54007 * 61.36810 * 12 11 10 14 14 C 1.52996 * 109.50293 * 178.68524 * 13 12 11 15 15 O 1.42897 * 109.47535 * 185.30900 * 14 13 12 16 16 N 1.46506 * 109.52337 * 58.60073 * 13 12 11 17 17 C 1.34778 * 119.99776 * 58.14997 * 16 13 12 18 18 O 1.21273 * 119.99808 * 5.04842 * 17 16 13 19 19 C 1.50696 * 119.99672 * 185.05605 * 17 16 13 20 20 O 1.42897 * 109.47078 * 179.97438 * 19 17 16 21 21 C 1.42896 * 114.00034 * 179.97438 * 20 19 17 22 22 C 1.53009 * 109.47066 * 179.97438 * 21 20 19 23 23 C 1.54267 * 110.03157 * 292.90911 * 22 21 20 24 24 C 1.54967 * 104.15796 * 217.13772 * 23 22 21 25 25 C 1.54896 * 102.77834 * 37.88534 * 24 23 22 26 26 C 1.53876 * 110.02920 * 175.69151 * 22 21 20 27 27 C 1.46922 * 120.63206 * 29.76047 * 9 7 2 28 28 H 0.97002 * 120.00427 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58876 * 353.36629 * 10 9 7 30 30 H 1.08999 * 109.58642 * 113.65601 * 10 9 7 31 31 H 1.09000 * 109.49859 * 65.32065 * 11 10 9 32 32 H 1.09007 * 109.49712 * 185.38020 * 11 10 9 33 33 H 1.09002 * 109.46213 * 301.34788 * 12 11 10 34 34 H 1.08999 * 109.45955 * 181.38911 * 12 11 10 35 35 H 1.09003 * 109.46847 * 65.30915 * 14 13 12 36 36 H 1.09002 * 109.46650 * 305.31358 * 14 13 12 37 37 H 0.96696 * 114.00262 * 179.97438 * 15 14 13 38 38 H 0.96996 * 119.99524 * 238.14444 * 16 13 12 39 39 H 1.09006 * 109.47225 * 299.99526 * 19 17 16 40 40 H 1.09007 * 109.47459 * 59.99499 * 19 17 16 41 41 H 1.09000 * 109.47440 * 299.99722 * 21 20 19 42 42 H 1.09000 * 109.47273 * 59.99892 * 21 20 19 43 43 H 1.08995 * 110.01640 * 54.29582 * 22 21 20 44 44 H 1.09007 * 110.48231 * 335.77621 * 23 22 21 45 45 H 1.08995 * 110.48766 * 98.42894 * 23 22 21 46 46 H 1.08999 * 110.71723 * 279.57433 * 24 23 22 47 47 H 1.08998 * 110.76617 * 156.21689 * 24 23 22 48 48 H 1.09001 * 110.48655 * 203.40590 * 25 24 23 49 49 H 1.09003 * 110.48397 * 80.76347 * 25 24 23 50 50 H 1.09003 * 110.02791 * 238.56827 * 26 22 21 51 51 H 1.09000 * 110.03673 * 359.97438 * 26 22 21 52 52 H 1.09002 * 109.58775 * 6.63068 * 27 9 7 53 53 H 1.08995 * 109.58806 * 246.20252 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0556 -1.2220 0.2711 9 7 1.3694 -2.3629 -0.3421 10 6 1.7917 -3.6482 0.2309 11 6 2.0639 -4.6316 -0.9117 12 6 0.8275 -4.7195 -1.8093 13 6 0.5358 -3.3445 -2.4147 14 6 -0.6807 -3.4405 -3.3376 15 8 -0.8781 -2.1884 -3.9974 16 7 1.6980 -2.8914 -3.1831 17 6 2.1633 -3.6378 -4.2043 18 8 1.5670 -4.6370 -4.5460 19 6 3.4248 -3.2309 -4.9213 20 8 3.7099 -4.1741 -5.9561 21 6 4.8925 -3.8789 -6.7019 22 6 5.0985 -4.9490 -7.7761 23 6 5.4235 -6.3048 -7.1158 24 6 6.4677 -6.9473 -8.0635 25 6 7.3262 -5.7342 -8.5002 26 6 6.3075 -4.5864 -8.6562 27 6 0.2463 -2.3464 -1.2892 28 1 -0.4851 0.8400 -0.0004 29 1 2.7007 -3.5067 0.8155 30 1 1.0020 -4.0394 0.8722 31 1 2.9145 -4.2827 -1.4972 32 1 2.2854 -5.6161 -0.4994 33 1 -0.0283 -5.0447 -1.2178 34 1 1.0097 -5.4372 -2.6092 35 1 -1.5650 -3.6842 -2.7488 36 1 -0.5125 -4.2202 -4.0804 37 1 -1.6340 -2.1764 -4.6002 38 1 2.1323 -2.0541 -2.9570 39 1 3.2913 -2.2411 -5.3581 40 1 4.2535 -3.2069 -4.2135 41 1 4.7889 -2.9029 -7.1761 42 1 5.7517 -3.8677 -6.0313 43 1 4.2027 -5.0382 -8.3905 44 1 5.8505 -6.1536 -6.1243 45 1 4.5288 -6.9244 -7.0565 46 1 5.9783 -7.4038 -8.9238 47 1 7.0753 -7.6785 -7.5303 48 1 7.8195 -5.9383 -9.4505 49 1 8.0608 -5.4907 -7.7326 50 1 5.9985 -4.5004 -9.6980 51 1 6.7472 -3.6479 -8.3185 52 1 0.1356 -1.3460 -1.7074 53 1 -0.6704 -2.6327 -0.7738 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700000529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = -144.267265 kcal Electronic energy + Delta-G solvation = -31711.969220 eV Core-core repulsion = 27582.751063 eV Total energy + Delta-G solvation = -4129.218157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43336 -39.84096 -38.93174 -37.67238 -37.33398 -35.35335 -34.22459 -32.27165 -31.68323 -31.21817 -29.56647 -28.32123 -27.29924 -26.63908 -25.16230 -24.00644 -22.58798 -21.68006 -21.52342 -20.58156 -20.12971 -18.82202 -18.27119 -18.13230 -17.75447 -17.29992 -16.79121 -16.55844 -16.12240 -16.07177 -15.87512 -15.64980 -15.34037 -15.02816 -14.80030 -14.71060 -14.25477 -14.21080 -14.07762 -13.91157 -13.51441 -13.29952 -13.09566 -12.90702 -12.77857 -12.69568 -12.48698 -12.25388 -12.14630 -11.99214 -11.97132 -11.89335 -11.69612 -11.67629 -11.48831 -11.47568 -11.32672 -11.20554 -11.04375 -10.63262 -10.51540 -10.34007 -9.81654 -8.63863 -7.84308 -5.31480 1.51202 1.52587 1.59176 1.72432 1.94423 2.53880 3.01792 3.30412 3.34391 3.65972 3.70408 3.72366 3.78332 3.92385 4.08296 4.14614 4.22635 4.25939 4.27630 4.35682 4.36930 4.42375 4.48260 4.50547 4.57935 4.61480 4.69528 4.76834 4.80786 4.84217 4.85369 4.91724 4.93636 4.97784 5.07012 5.10494 5.11474 5.20289 5.25649 5.31966 5.36082 5.47086 5.48288 5.49239 5.63888 5.73543 5.75420 6.13217 6.42321 6.76667 6.91701 7.16518 7.37606 7.86163 8.41232 9.21670 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.002879 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.075840 B = 9723.391777 C =10392.480626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.301 1.301 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.069 0.931 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.164 3.836 14 C 0.074 3.926 15 O -0.578 6.578 16 N -0.685 5.685 17 C 0.513 3.487 18 O -0.565 6.565 19 C 0.048 3.952 20 O -0.387 6.387 21 C 0.062 3.938 22 C -0.091 4.091 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.114 4.114 27 C 0.192 3.808 28 H 0.249 0.751 29 H 0.056 0.944 30 H 0.014 0.986 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.388 0.612 38 H 0.404 0.596 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.067 0.933 53 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.824 -9.279 -15.316 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.325 5.325 10 C 0.015 3.985 11 C -0.154 4.154 12 C -0.154 4.154 13 C 0.076 3.924 14 C -0.005 4.005 15 O -0.384 6.384 16 N -0.336 5.336 17 C 0.300 3.700 18 O -0.445 6.445 19 C -0.031 4.031 20 O -0.306 6.306 21 C -0.014 4.014 22 C -0.110 4.110 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.152 4.152 27 C 0.066 3.934 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.236 0.764 38 H 0.239 0.761 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.086 0.914 53 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 10.727 -9.848 -15.196 21.047 hybrid contribution -0.466 1.476 0.294 1.576 sum 10.260 -8.372 -14.902 19.935 Atomic orbital electron populations 1.70159 1.06714 1.25909 1.54675 1.25790 0.95838 1.01366 1.00860 0.85428 0.77562 0.79471 0.78455 1.19760 1.22745 1.20461 1.19379 0.92706 0.85442 1.41676 0.91356 1.44215 1.37505 1.02690 1.48095 1.21087 0.97489 0.86163 0.93785 1.21784 0.97064 0.99333 0.97189 1.21688 0.99153 0.95517 0.99062 1.21013 0.84328 0.95993 0.91091 1.22508 0.96743 0.86019 0.95218 1.86498 1.54504 1.34464 1.62957 1.45669 1.31410 1.24817 1.31659 1.20577 0.86256 0.83271 0.79884 1.90575 1.59984 1.27880 1.66058 1.22202 0.95523 0.93865 0.91549 1.87966 1.45475 1.49618 1.47497 1.22933 0.86518 0.98594 0.93378 1.21780 0.99267 0.94445 0.95506 1.22365 0.98720 0.95598 0.98771 1.22546 0.97013 0.97770 0.98931 1.22369 0.97377 0.94313 1.01904 1.22129 0.94207 0.99349 0.99486 1.20622 0.88445 0.97182 0.87177 0.94200 0.92501 0.96811 0.92928 0.90503 0.91428 0.91242 0.93007 0.92477 0.76364 0.76059 0.88885 0.88715 0.92089 0.92135 0.91445 0.92200 0.93130 0.91319 0.91085 0.90422 0.91303 0.90683 0.90712 0.91418 0.97605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 11.31 21.65 0.24 -53.04 16 2 C -0.04 -2.24 4.90 84.86 0.42 -1.83 16 3 Si 0.96 42.86 29.59 68.60 2.03 44.89 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.26 -13.48 9.56 84.03 0.80 -12.68 16 8 H 0.07 3.41 7.88 -2.91 -0.02 3.39 16 9 N -0.60 -28.52 2.90 -699.09 -2.03 -30.55 16 10 C 0.14 5.64 6.52 86.36 0.56 6.20 16 11 C -0.11 -3.94 5.93 30.67 0.18 -3.76 16 12 C -0.12 -4.12 4.45 30.62 0.14 -3.98 16 13 C 0.16 6.29 0.45 3.68 0.00 6.29 16 14 C 0.07 2.65 5.66 71.98 0.41 3.06 16 15 O -0.58 -20.45 13.08 -148.98 -1.95 -22.39 16 16 N -0.68 -24.81 3.94 -422.57 -1.67 -26.47 16 17 C 0.51 17.77 7.27 87.66 0.64 18.41 16 18 O -0.57 -22.70 12.82 16.03 0.21 -22.49 16 19 C 0.05 1.30 6.42 71.23 0.46 1.76 16 20 O -0.39 -11.07 9.71 -129.94 -1.26 -12.33 16 21 C 0.06 1.26 4.98 71.99 0.36 1.62 16 22 C -0.09 -1.71 3.19 -10.07 -0.03 -1.75 16 23 C -0.12 -2.30 6.22 31.70 0.20 -2.10 16 24 C -0.13 -1.84 6.91 31.91 0.22 -1.62 16 25 C -0.12 -1.50 6.83 31.67 0.22 -1.28 16 26 C -0.11 -1.53 6.46 31.32 0.20 -1.33 16 27 C 0.19 8.96 3.84 86.37 0.33 9.29 16 28 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 1.85 7.49 -2.39 -0.02 1.84 16 32 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.55 6.26 -2.39 -0.01 2.53 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.08 6.32 -2.39 -0.02 2.07 16 37 H 0.39 9.76 9.12 -74.06 -0.68 9.08 16 38 H 0.40 15.12 8.48 -92.71 -0.79 14.33 16 39 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.09 8.02 -2.39 -0.02 1.07 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.24 7.77 -2.38 -0.02 1.22 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 52 H 0.07 3.61 6.04 -2.39 -0.01 3.60 16 53 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -66.75 407.68 0.11 -66.63 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.56 Total: 39.43 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 5.10 Total: 16.32 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -3.45 Total: -110.06 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -3.00 Total: -57.22 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -66.75 0.11 -66.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700000529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.635 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds