Wall clock time and date at job start Sat Apr 11 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.57432 * 2 1 4 4 C 1.53187 * 109.52187 * 239.84733 * 2 1 3 5 5 C 1.53173 * 109.03290 * 297.07557 * 4 2 1 6 6 C 1.53091 * 109.16593 * 303.01683 * 5 4 2 7 7 H 1.09001 * 109.49039 * 297.62827 * 6 5 4 8 8 C 1.52997 * 109.48417 * 177.59144 * 6 5 4 9 9 C 1.50704 * 109.47142 * 175.05869 * 8 6 5 10 10 O 1.21278 * 119.99781 * 359.97438 * 9 8 6 11 11 N 1.34775 * 120.00104 * 180.02562 * 9 8 6 12 12 C 1.47160 * 120.97985 * 0.02562 * 11 9 8 13 13 C 1.53298 * 108.38137 * 230.51604 * 12 11 9 14 14 O 1.42958 * 109.22218 * 307.69395 * 13 12 11 15 15 C 1.42964 * 114.16641 * 62.58546 * 14 13 12 16 16 H 1.09003 * 109.55417 * 57.36542 * 15 14 13 17 17 C 1.53001 * 109.51484 * 177.48741 * 15 14 13 18 18 N 1.46496 * 109.47205 * 299.75095 * 17 15 14 19 19 C 1.36945 * 119.99718 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47153 * 120.98571 * 180.02562 * 11 9 8 28 28 O 1.42908 * 109.41465 * 57.60903 * 6 5 4 29 29 C 1.42902 * 114.09824 * 298.84663 * 28 6 5 30 30 H 1.08999 * 109.46568 * 299.83887 * 1 2 3 31 31 H 1.09004 * 109.47035 * 59.83875 * 1 2 3 32 32 H 1.08998 * 109.46998 * 179.84053 * 1 2 3 33 33 H 1.09002 * 109.46663 * 180.15712 * 3 2 1 34 34 H 1.08995 * 109.47497 * 300.16060 * 3 2 1 35 35 H 1.09001 * 109.46648 * 60.16331 * 3 2 1 36 36 H 1.08996 * 109.54154 * 56.94252 * 4 2 1 37 37 H 1.08998 * 109.54491 * 177.20860 * 4 2 1 38 38 H 1.09004 * 109.52469 * 183.11369 * 5 4 2 39 39 H 1.08998 * 109.52688 * 62.92296 * 5 4 2 40 40 H 1.09004 * 109.46982 * 55.06484 * 8 6 5 41 41 H 1.08995 * 109.47597 * 295.06289 * 8 6 5 42 42 H 1.08993 * 109.68052 * 350.23602 * 12 11 9 43 43 H 1.08998 * 109.67940 * 110.79400 * 12 11 9 44 44 H 1.08994 * 109.51322 * 67.62510 * 13 12 11 45 45 H 1.09005 * 109.50974 * 187.77412 * 13 12 11 46 46 H 1.08997 * 109.46922 * 179.74136 * 17 15 14 47 47 H 1.09000 * 109.46483 * 59.74956 * 17 15 14 48 48 H 0.96996 * 120.00499 * 359.97438 * 18 17 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.67875 * 9.75578 * 27 11 9 51 51 H 1.08997 * 109.67953 * 249.20777 * 27 11 9 52 52 H 1.09001 * 109.47780 * 181.13817 * 29 28 6 53 53 H 1.09002 * 109.47986 * 301.16037 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0426 1.4416 0.0000 4 6 2.0419 -0.7252 -1.2484 5 6 1.5877 -2.1872 -1.1984 6 6 2.0970 -2.8277 0.0954 7 1 3.1870 -2.8198 0.1006 8 6 1.5968 -4.2711 0.1817 9 6 2.1964 -4.9390 1.3922 10 8 2.9500 -4.3216 2.1146 11 7 1.8960 -6.2228 1.6715 12 6 0.9856 -6.9927 0.8089 13 6 -0.0836 -7.6438 1.6937 14 8 0.5550 -8.3673 2.7484 15 6 1.3275 -7.5521 3.6331 16 1 0.6920 -6.7793 4.0655 17 6 1.9089 -8.4200 4.7511 18 7 0.8173 -9.0463 5.5009 19 6 1.0976 -9.8737 6.5556 20 1 2.1233 -10.0648 6.8341 21 6 0.0633 -10.4666 7.2664 22 7 -1.1869 -10.2341 6.9266 23 14 0.4457 -11.5958 8.7045 24 1 -0.8231 -12.0966 9.2917 25 1 1.2591 -12.7439 8.2298 26 1 1.2049 -10.8441 9.7359 27 6 2.4686 -6.8962 2.8480 28 8 1.6099 -2.0868 1.2162 29 6 2.0417 -0.7250 1.2475 30 1 -0.3632 0.5113 0.8914 31 1 -0.3633 0.5164 -0.8886 32 1 -0.3633 -1.0276 -0.0029 33 1 3.1327 1.4396 -0.0028 34 1 1.6779 1.9570 -0.8885 35 1 1.6826 1.9552 0.8915 36 1 1.6357 -0.2475 -2.1399 37 1 3.1308 -0.6824 -1.2743 38 1 1.9940 -2.7245 -2.0553 39 1 0.4989 -2.2314 -1.2225 40 1 1.8937 -4.8127 -0.7165 41 1 0.5101 -4.2746 0.2656 42 1 0.5105 -6.3262 0.0893 43 1 1.5454 -7.7648 0.2811 44 1 -0.7247 -6.8713 2.1182 45 1 -0.6845 -8.3281 1.0947 46 1 2.5014 -7.7986 5.4225 47 1 2.5428 -9.1937 4.3179 48 1 -0.1040 -8.8749 5.2505 49 1 -1.9096 -10.6489 7.4231 50 1 2.9755 -6.1657 3.4785 51 1 3.1778 -7.6585 2.5257 52 1 1.6454 -0.2385 2.1388 53 1 3.1309 -0.6894 1.2678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700160749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:14 Heat of formation + Delta-G solvation = -146.402508 kcal Electronic energy + Delta-G solvation = -30828.935257 eV Core-core repulsion = 26699.624509 eV Total energy + Delta-G solvation = -4129.310748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58020 -40.75123 -39.40001 -36.66294 -36.28032 -35.69607 -34.27480 -33.84042 -31.98911 -30.71363 -29.20317 -28.18134 -27.50910 -26.73077 -25.33430 -24.71641 -23.83273 -22.66068 -22.13874 -20.11844 -19.81568 -19.24121 -18.18361 -17.73822 -17.51315 -17.11133 -16.72130 -16.58326 -16.31866 -15.99790 -15.93010 -15.76103 -15.37349 -15.11740 -15.01811 -14.73305 -14.55763 -14.25575 -14.09880 -13.82431 -13.55217 -13.40271 -13.08416 -13.01592 -12.96426 -12.83069 -12.76986 -12.72070 -12.59721 -12.41939 -12.27737 -12.07846 -11.93759 -11.88122 -11.76211 -11.61428 -11.34327 -11.16863 -11.09967 -10.95180 -10.77578 -10.21235 -9.59152 -9.01767 -7.94160 -5.24156 1.46963 1.51399 1.57246 1.61077 1.83919 2.56370 2.76262 2.86035 3.38952 3.41761 3.58772 3.66520 3.78441 3.83427 3.90490 3.95863 4.02444 4.08385 4.12530 4.15977 4.25236 4.35492 4.38990 4.44586 4.50466 4.52797 4.61427 4.65441 4.66747 4.70399 4.76240 4.79609 4.82789 4.88318 4.89415 4.93620 4.96492 5.02654 5.07568 5.07843 5.13747 5.23902 5.31240 5.31640 5.40166 5.47277 5.54567 6.23379 6.27548 6.31933 6.40505 7.13905 7.32889 8.06600 8.32042 9.29350 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.002018 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.767652 B =13872.102055 C =14273.473271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.145 4.145 6 C 0.102 3.898 7 H 0.045 0.955 8 C -0.127 4.127 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.619 5.619 12 C 0.076 3.924 13 C 0.035 3.965 14 O -0.388 6.388 15 C 0.089 3.911 16 H 0.043 0.957 17 C 0.160 3.840 18 N -0.740 5.740 19 C -0.250 4.250 20 H 0.078 0.922 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.980 3.020 24 H -0.294 1.294 25 H -0.276 1.276 26 H -0.277 1.277 27 C 0.096 3.904 28 O -0.392 6.392 29 C 0.070 3.930 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.128 0.872 46 H 0.040 0.960 47 H 0.031 0.969 48 H 0.375 0.625 49 H 0.252 0.748 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.084 0.916 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 20.930 -25.667 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.182 4.182 6 C 0.044 3.956 7 H 0.063 0.937 8 C -0.166 4.166 9 C 0.301 3.699 10 O -0.454 6.454 11 N -0.353 5.353 12 C -0.045 4.045 13 C -0.042 4.042 14 O -0.306 6.306 15 C 0.030 3.970 16 H 0.061 0.939 17 C 0.033 3.967 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.096 0.904 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.808 3.192 24 H -0.220 1.220 25 H -0.202 1.202 26 H -0.203 1.203 27 C -0.028 4.028 28 O -0.311 6.311 29 C -0.006 4.006 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.163 0.837 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.146 0.854 46 H 0.057 0.943 47 H 0.049 0.951 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.102 0.898 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.277 20.900 -25.026 33.029 hybrid contribution -0.094 -0.280 1.128 1.166 sum 5.184 20.620 -23.898 31.987 Atomic orbital electron populations 1.21785 0.93615 1.01956 1.01751 1.21205 0.96964 0.96277 0.95561 1.21778 1.00991 0.94193 1.02570 1.21664 1.00681 0.94912 0.97483 1.22240 1.02695 0.96409 0.96860 1.21889 0.97144 0.89911 0.86704 0.93652 1.21893 1.03600 0.94421 0.96670 1.21347 0.80643 0.80378 0.87526 1.90691 1.38483 1.63973 1.52299 1.48321 1.47864 1.12040 1.27116 1.22707 0.91547 0.97185 0.93082 1.23259 0.94564 0.97358 0.89060 1.88096 1.66405 1.34839 1.41302 1.22412 0.92233 0.92384 0.89959 0.93917 1.20764 0.90979 0.94360 0.90590 1.42392 1.04538 1.55803 1.35505 1.19640 0.92997 1.19542 1.05949 0.90436 1.25653 0.95105 1.03165 1.03075 1.69843 0.98628 1.49453 1.44074 0.85128 0.76383 0.78734 0.78984 1.21992 1.20215 1.20311 1.21986 0.95473 0.97175 0.88138 1.87950 1.73738 1.22898 1.46516 1.22647 0.97882 0.81786 0.98321 0.93333 0.91573 0.92654 0.92559 0.91215 0.92526 0.89815 0.92015 0.88590 0.90004 0.83712 0.86383 0.84964 0.88802 0.93434 0.85376 0.94267 0.95083 0.79299 0.93966 0.89614 0.89648 0.89765 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.08 71.98 0.58 -1.15 16 2 C -0.10 -1.31 0.78 -52.09 -0.04 -1.35 16 3 C -0.14 -1.46 8.49 71.98 0.61 -0.85 16 4 C -0.11 -1.17 4.81 30.71 0.15 -1.02 16 5 C -0.14 -1.50 5.05 30.68 0.16 -1.35 16 6 C 0.10 1.78 2.19 30.62 0.07 1.85 16 7 H 0.05 0.95 7.96 -2.39 -0.02 0.93 16 8 C -0.13 -1.89 3.79 29.85 0.11 -1.78 16 9 C 0.51 12.98 7.59 87.66 0.67 13.64 16 10 O -0.58 -20.08 14.89 10.75 0.16 -19.92 16 11 N -0.62 -15.10 3.02 -817.41 -2.47 -17.57 16 12 C 0.08 1.27 6.54 86.35 0.56 1.84 16 13 C 0.03 0.81 6.98 72.08 0.50 1.31 16 14 O -0.39 -13.77 10.14 -148.98 -1.51 -15.28 16 15 C 0.09 3.23 2.86 30.68 0.09 3.32 16 16 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 17 C 0.16 6.93 5.95 86.38 0.51 7.45 16 18 N -0.74 -40.45 5.50 -343.47 -1.89 -42.33 16 19 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 22 N -0.97 -61.61 13.06 21.65 0.28 -61.32 16 23 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 C 0.10 2.89 5.93 86.34 0.51 3.40 16 28 O -0.39 -9.34 9.06 -135.21 -1.23 -10.56 16 29 C 0.07 1.36 5.54 72.01 0.40 1.76 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.81 6.13 -2.39 -0.01 0.80 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.08 0.80 6.62 -2.39 -0.02 0.78 16 40 H 0.15 1.01 8.01 -2.39 -0.02 0.99 16 41 H 0.12 1.43 7.66 -2.39 -0.02 1.41 16 42 H 0.13 1.10 6.05 -2.39 -0.01 1.08 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.38 22.02 7.55 -92.71 -0.70 21.32 16 49 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 50 H 0.09 2.83 7.08 -2.39 -0.02 2.81 16 51 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 52 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -79.84 408.23 1.74 -78.10 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.18 Total: 30.25 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.19 Total: 9.06 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.07 Total: -121.23 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.58 Total: -45.76 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -79.84 1.74 -78.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700160749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.303 kcal (2) G-P(sol) polarization free energy of solvation -79.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds