Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 110.91592 * 2 1 4 4 C 1.55391 * 111.19359 * 235.94066 * 2 1 3 5 5 N 1.47423 * 104.87426 * 204.98021 * 4 2 1 6 6 C 1.36932 * 125.64617 * 204.09638 * 5 4 2 7 7 H 1.07994 * 120.00357 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99954 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00065 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00201 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47258 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47434 * 120.00038 * 10 8 6 13 13 H 1.48504 * 109.47404 * 240.00194 * 10 8 6 14 14 C 1.47023 * 108.70433 * 24.13051 * 5 4 2 15 15 C 1.54327 * 107.27213 * 358.93979 * 14 5 4 16 16 H 1.08991 * 110.72110 * 219.26564 * 15 14 5 17 17 N 1.46506 * 110.71805 * 96.16860 * 15 14 5 18 18 C 1.34777 * 119.99873 * 88.84784 * 17 15 14 19 19 O 1.21284 * 119.99754 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00137 * 179.97438 * 18 17 15 21 21 C 1.53002 * 109.47300 * 179.97438 * 20 18 17 22 22 O 1.42895 * 109.47074 * 180.02562 * 21 20 18 23 23 C 1.42903 * 114.00137 * 179.97438 * 22 21 20 24 24 C 1.53175 * 109.54087 * 269.55678 * 23 22 21 25 25 C 1.53091 * 109.16348 * 183.15205 * 24 23 22 26 26 O 1.42902 * 109.41656 * 57.60182 * 25 24 23 27 27 C 1.42896 * 114.10138 * 298.84837 * 26 25 24 28 28 C 1.53095 * 109.41733 * 61.15314 * 27 26 25 29 29 H 1.08991 * 109.47487 * 296.10134 * 1 2 3 30 30 H 1.09005 * 109.47109 * 56.10576 * 1 2 3 31 31 H 1.09004 * 109.47004 * 176.09811 * 1 2 3 32 32 H 1.08996 * 109.47043 * 183.90130 * 3 2 1 33 33 H 1.09000 * 109.46961 * 303.90122 * 3 2 1 34 34 H 1.09000 * 109.47230 * 63.89739 * 3 2 1 35 35 H 1.08994 * 110.34000 * 86.12853 * 4 2 1 36 36 H 1.08997 * 110.43680 * 323.88072 * 4 2 1 37 37 H 0.96997 * 120.00829 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.88432 * 239.52666 * 14 5 4 39 39 H 1.09006 * 110.01266 * 118.42959 * 14 5 4 40 40 H 0.96995 * 120.00050 * 268.56899 * 17 15 14 41 41 H 1.09004 * 109.47043 * 299.99732 * 20 18 17 42 42 H 1.09000 * 109.46978 * 59.99653 * 20 18 17 43 43 H 1.09000 * 109.46497 * 299.99731 * 21 20 18 44 44 H 1.08987 * 109.47025 * 59.99846 * 21 20 18 45 45 H 1.08999 * 109.53906 * 29.81505 * 23 22 21 46 46 H 1.09003 * 109.52097 * 303.05234 * 24 23 22 47 47 H 1.08998 * 109.52945 * 63.24319 * 24 23 22 48 48 H 1.08997 * 109.47873 * 297.62495 * 25 24 23 49 49 H 1.08999 * 109.48422 * 177.58605 * 25 24 23 50 50 H 1.09002 * 109.47971 * 301.17546 * 27 26 25 51 51 H 1.09000 * 109.49658 * 181.14247 * 27 26 25 52 52 H 1.08999 * 109.52402 * 182.48880 * 28 27 26 53 53 H 1.08999 * 109.57278 * 62.33018 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0918 -0.8114 -1.2003 5 7 3.4328 -1.2460 -0.7688 6 6 4.4721 -1.5705 -1.5992 7 1 4.3443 -1.5178 -2.6702 8 6 5.6900 -1.9673 -1.0642 9 7 5.8460 -2.0311 0.2411 10 14 7.1076 -2.4107 -2.1969 11 1 6.6782 -2.2586 -3.6103 12 1 8.2565 -1.5090 -1.9284 13 1 7.5150 -3.8177 -1.9527 14 6 3.4691 -1.2741 0.7007 15 6 2.0861 -0.8078 1.2023 16 1 2.1891 -0.1706 2.0805 17 7 1.2268 -1.9574 1.4963 18 6 1.2426 -2.5142 2.7235 19 8 1.9686 -2.0639 3.5844 20 6 0.3583 -3.6963 3.0261 21 6 0.5678 -4.1317 4.4778 22 8 -0.2703 -5.2529 4.7645 23 6 -0.1505 -5.7412 6.1022 24 6 0.9372 -6.8183 6.1590 25 6 1.0041 -7.3906 7.5773 26 8 -0.2751 -7.9151 7.9388 27 6 -1.3226 -6.9431 7.9491 28 6 -1.4830 -6.3528 6.5457 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5731 -0.8531 31 1 -0.3633 -1.0253 -0.0699 32 1 3.1636 1.4026 -0.0699 33 1 1.6705 1.9732 -0.8530 34 1 1.7836 1.9300 0.9228 35 1 2.1644 -0.1785 -2.0846 36 1 1.4601 -1.6760 -1.4042 37 1 6.6969 -2.3088 0.6150 38 1 4.2428 -0.5984 1.0654 39 1 3.6677 -2.2875 1.0497 40 1 0.6435 -2.3152 0.8088 41 1 -0.6848 -3.4173 2.8770 42 1 0.6128 -4.5205 2.3597 43 1 1.6109 -4.4108 4.6264 44 1 0.3136 -3.3077 5.1445 45 1 0.1132 -4.9195 6.7680 46 1 0.6973 -7.6156 5.4555 47 1 1.8996 -6.3783 5.8980 48 1 1.2835 -6.6012 8.2750 49 1 1.7469 -8.1875 7.6131 50 1 -1.0735 -6.1478 8.6517 51 1 -2.2559 -7.4173 8.2528 52 1 -2.2513 -5.5798 6.5613 53 1 -1.7722 -7.1399 5.8494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700578401.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = -138.243919 kcal Electronic energy + Delta-G solvation = -30656.723867 eV Core-core repulsion = 26527.766903 eV Total energy + Delta-G solvation = -4128.956965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29854 -40.59772 -39.54352 -38.41229 -35.70157 -34.50092 -33.99798 -32.61503 -32.13312 -32.01673 -29.69889 -28.06304 -27.41678 -25.94160 -25.15756 -24.66660 -24.05699 -22.18687 -21.50090 -21.18123 -20.08337 -18.70005 -18.55417 -17.55731 -17.36616 -17.24933 -16.93680 -16.80406 -16.53400 -15.92470 -15.74111 -15.64142 -15.46977 -15.18113 -14.87515 -14.72846 -14.53282 -14.18689 -13.97293 -13.77182 -13.44736 -13.38079 -13.15970 -13.03013 -12.94702 -12.80966 -12.71129 -12.68803 -12.56989 -12.34502 -12.10969 -12.07160 -11.86150 -11.81479 -11.74471 -11.51752 -11.38249 -11.29502 -10.96109 -10.74863 -10.68649 -10.52597 -9.97661 -8.89518 -7.84474 -5.20920 1.43220 1.44110 1.54540 1.64368 1.99427 2.47950 2.74002 2.94368 3.33905 3.49644 3.69823 3.71514 3.72648 3.79500 3.94923 3.96408 4.02200 4.04279 4.08957 4.15940 4.24255 4.34872 4.40174 4.48331 4.53044 4.56518 4.67079 4.73308 4.73574 4.77972 4.79044 4.84365 4.86144 4.89505 4.96635 5.02679 5.06740 5.10023 5.14621 5.17485 5.18113 5.32374 5.36797 5.45893 5.57357 5.71921 5.76175 6.14527 6.17197 6.19735 6.59483 7.07757 7.29246 7.77582 8.41618 9.24777 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012668 B = 0.002377 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.722398 B =11774.492738 C =13441.552742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.621 5.621 6 C -0.233 4.233 7 H 0.087 0.913 8 C -0.072 4.072 9 N -0.954 5.954 10 Si 0.977 3.023 11 H -0.261 1.261 12 H -0.295 1.295 13 H -0.296 1.296 14 C 0.193 3.807 15 C 0.137 3.863 16 H 0.077 0.923 17 N -0.699 5.699 18 C 0.512 3.488 19 O -0.589 6.589 20 C -0.126 4.126 21 C 0.084 3.916 22 O -0.388 6.388 23 C 0.082 3.918 24 C -0.179 4.179 25 C 0.064 3.936 26 O -0.401 6.401 27 C 0.061 3.939 28 C -0.147 4.147 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.242 0.758 38 H 0.003 0.997 39 H -0.001 1.001 40 H 0.411 0.589 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.117 0.883 52 H 0.093 0.907 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.959 -4.256 10.506 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.347 5.347 6 C -0.362 4.362 7 H 0.105 0.895 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.805 3.195 11 H -0.185 1.185 12 H -0.223 1.223 13 H -0.224 1.224 14 C 0.067 3.933 15 C 0.031 3.969 16 H 0.095 0.905 17 N -0.350 5.350 18 C 0.300 3.700 19 O -0.470 6.470 20 C -0.166 4.166 21 C 0.007 3.993 22 O -0.308 6.308 23 C 0.024 3.976 24 C -0.218 4.218 25 C -0.013 4.013 26 O -0.320 6.320 27 C -0.016 4.016 28 C -0.185 4.185 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.249 0.751 41 H 0.150 0.850 42 H 0.127 0.873 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.124 0.876 50 H 0.082 0.918 51 H 0.135 0.865 52 H 0.111 0.889 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.411 -4.273 10.992 22.713 hybrid contribution 1.826 -0.103 -0.694 1.956 sum -17.584 -4.377 10.298 20.843 Atomic orbital electron populations 1.21642 0.90622 1.02743 1.03051 1.22071 0.97369 0.95116 0.93038 1.21594 0.99939 0.94034 1.02613 1.21986 0.85437 0.95505 0.95801 1.44695 1.09323 1.78878 1.01806 1.19506 0.90142 1.36786 0.89812 0.89513 1.25678 1.00661 1.02814 0.97265 1.70240 1.24092 1.55030 1.10948 0.85026 0.79113 0.76677 0.78644 1.18486 1.22259 1.22352 1.21080 0.92049 0.96556 0.83622 1.22067 0.90144 0.87179 0.97534 0.90524 1.45825 1.43425 1.32692 1.13068 1.20956 0.82608 0.84546 0.81881 1.90694 1.43494 1.64927 1.47866 1.21403 1.01865 0.95823 0.97500 1.22032 0.93639 0.88138 0.95541 1.87827 1.64216 1.48114 1.30601 1.22276 0.96300 0.95441 0.83551 1.22722 0.99941 0.99704 0.99394 1.22621 0.85570 0.99769 0.93291 1.87915 1.17969 1.36766 1.89394 1.22759 0.91742 0.92324 0.94749 1.22279 0.96329 1.01653 0.98229 0.91600 0.90452 0.91553 0.95270 0.90328 0.91606 0.93478 0.94936 0.94824 0.97876 0.98231 0.75080 0.84955 0.87292 0.94378 0.92463 0.91442 0.91064 0.91114 0.91971 0.87585 0.91820 0.86485 0.88870 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.23 71.98 0.59 -1.93 16 2 C -0.07 -2.27 0.84 -50.62 -0.04 -2.32 16 3 C -0.12 -3.73 8.58 71.98 0.62 -3.11 16 4 C 0.14 5.13 6.16 87.03 0.54 5.67 16 5 N -0.62 -31.33 3.38 -691.02 -2.34 -33.67 16 6 C -0.23 -13.03 10.28 84.04 0.86 -12.17 16 7 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 8 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 9 N -0.95 -60.01 10.31 21.65 0.22 -59.79 16 10 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 14 C 0.19 9.94 4.80 86.73 0.42 10.35 16 15 C 0.14 5.16 2.54 46.18 0.12 5.28 16 16 H 0.08 3.08 7.53 -2.39 -0.02 3.06 16 17 N -0.70 -21.73 4.52 -436.91 -1.97 -23.71 16 18 C 0.51 16.64 7.83 87.66 0.69 17.32 16 19 O -0.59 -24.65 15.67 -3.04 -0.05 -24.69 16 20 C -0.13 -2.92 6.07 29.85 0.18 -2.74 16 21 C 0.08 2.08 5.04 71.98 0.36 2.44 16 22 O -0.39 -8.90 10.00 -148.98 -1.49 -10.39 16 23 C 0.08 1.56 2.70 30.71 0.08 1.65 16 24 C -0.18 -3.45 5.76 30.68 0.18 -3.27 16 25 C 0.06 1.04 6.84 72.01 0.49 1.53 16 26 O -0.40 -7.34 10.76 -148.98 -1.60 -8.94 16 27 C 0.06 0.79 6.84 72.01 0.49 1.28 16 28 C -0.15 -2.21 5.79 30.68 0.18 -2.03 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.07 1.18 6.44 -2.38 -0.02 1.17 16 32 H 0.03 1.09 7.91 -2.39 -0.02 1.08 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 36 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 37 H 0.24 15.00 8.31 -92.71 -0.77 14.22 16 38 H 0.00 0.19 7.38 -2.39 -0.02 0.17 16 39 H 0.00 -0.03 7.41 -2.38 -0.02 -0.05 16 40 H 0.41 10.22 7.00 -92.71 -0.65 9.57 16 41 H 0.13 2.18 8.14 -2.38 -0.02 2.17 16 42 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.04 1.10 7.95 -2.39 -0.02 1.08 16 44 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 45 H 0.07 1.22 7.79 -2.39 -0.02 1.20 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 47 H 0.07 1.45 7.99 -2.39 -0.02 1.43 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -77.02 412.79 1.24 -75.77 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.22 Total: 22.31 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.22 Total: 14.26 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -4.09 Total: -117.17 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -3.14 Total: -44.02 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -77.02 1.24 -75.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700578401.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.469 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds