Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.42837 * 54.30129 * 11 10 9 13 13 C 1.54262 * 110.49057 * 291.76157 * 11 10 9 14 14 C 1.53873 * 106.60233 * 217.71026 * 13 11 10 15 15 C 1.54269 * 106.59531 * 359.97438 * 14 13 11 16 16 H 1.09007 * 110.48350 * 264.93096 * 15 14 13 17 17 N 1.46499 * 110.48626 * 142.42402 * 15 14 13 18 18 C 1.34775 * 120.00340 * 86.45441 * 17 15 14 19 19 O 1.21279 * 119.99680 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00225 * 179.97438 * 18 17 15 21 21 C 1.53002 * 109.47126 * 179.97438 * 20 18 17 22 22 O 1.42903 * 109.46956 * 179.97438 * 21 20 18 23 23 C 1.42901 * 114.00134 * 179.97438 * 22 21 20 24 24 C 1.53176 * 109.54386 * 269.55854 * 23 22 21 25 25 C 1.53087 * 109.16440 * 183.14911 * 24 23 22 26 26 O 1.42907 * 109.41372 * 57.60493 * 25 24 23 27 27 C 1.42899 * 114.09974 * 298.84522 * 26 25 24 28 28 C 1.53093 * 109.41663 * 61.15490 * 27 26 25 29 29 C 1.54890 * 110.48889 * 176.83810 * 11 10 9 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 34 34 H 1.09008 * 110.02665 * 336.99233 * 13 11 10 35 35 H 1.08994 * 110.03547 * 98.37483 * 13 11 10 36 36 H 1.08999 * 110.03314 * 119.27638 * 14 13 11 37 37 H 1.08993 * 110.03412 * 240.66856 * 14 13 11 38 38 H 0.97001 * 119.99673 * 266.44739 * 17 15 14 39 39 H 1.09002 * 109.46935 * 299.99446 * 20 18 17 40 40 H 1.08998 * 109.47347 * 59.99471 * 20 18 17 41 41 H 1.09002 * 109.46868 * 299.99618 * 21 20 18 42 42 H 1.08996 * 109.47266 * 60.00130 * 21 20 18 43 43 H 1.09004 * 109.53791 * 29.81799 * 23 22 21 44 44 H 1.09000 * 109.52087 * 303.05704 * 24 23 22 45 45 H 1.09004 * 109.52400 * 63.23939 * 24 23 22 46 46 H 1.09000 * 109.48232 * 297.62346 * 25 24 23 47 47 H 1.08996 * 109.49064 * 177.59284 * 25 24 23 48 48 H 1.09000 * 109.47804 * 301.17254 * 27 26 25 49 49 H 1.08994 * 109.49233 * 181.14520 * 27 26 25 50 50 H 1.08996 * 109.52548 * 182.48383 * 28 27 26 51 51 H 1.09006 * 109.57025 * 62.32916 * 28 27 26 52 52 H 1.08999 * 110.75882 * 274.94450 * 29 11 10 53 53 H 1.09011 * 110.75158 * 38.31064 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8815 -1.5359 0.8306 13 6 6.0493 -1.5661 -1.3410 14 6 7.4278 -2.1607 -1.6786 15 6 7.7846 -3.1262 -0.5295 16 1 8.4022 -2.6224 0.2141 17 7 8.4737 -4.3098 -1.0496 18 6 9.8102 -4.2901 -1.2222 19 8 10.4424 -3.2923 -0.9473 20 6 10.5190 -5.5078 -1.7567 21 6 12.0189 -5.2223 -1.8560 22 8 12.6911 -6.3772 -2.3623 23 6 14.1047 -6.2154 -2.4951 24 6 14.4303 -5.6831 -3.8940 25 6 15.9498 -5.5876 -4.0543 26 8 16.5327 -6.8733 -3.8317 27 6 16.3012 -7.4003 -2.5238 28 6 14.7958 -7.5687 -2.3020 29 6 6.4139 -3.5168 0.0811 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 0.0007 32 1 3.8484 -3.0428 0.8907 33 1 3.8490 -3.0424 -0.8892 34 1 5.3315 -1.8213 -2.1206 35 1 6.1232 -0.4832 -1.2418 36 1 7.3790 -2.7045 -2.6220 37 1 8.1713 -1.3664 -1.7437 38 1 7.9680 -5.1078 -1.2697 39 1 10.3528 -6.3493 -1.0841 40 1 10.1294 -5.7503 -2.7453 41 1 12.1848 -4.3808 -2.5287 42 1 12.4088 -4.9796 -0.8675 43 1 14.4634 -5.5122 -1.7434 44 1 14.0268 -6.3622 -4.6451 45 1 13.9879 -4.6949 -4.0199 46 1 16.3479 -4.8776 -3.3294 47 1 16.1886 -5.2499 -5.0627 48 1 16.7038 -6.7141 -1.7788 49 1 16.7929 -8.3685 -2.4295 50 1 14.6148 -7.9289 -1.2894 51 1 14.3988 -8.2861 -3.0203 52 1 6.5274 -3.8375 1.1166 53 1 5.9336 -4.2932 -0.5145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700906019.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -164.440130 kcal Electronic energy + Delta-G solvation = -28936.778051 eV Core-core repulsion = 24806.685133 eV Total energy + Delta-G solvation = -4130.092918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13128 -40.56642 -39.35202 -38.43000 -36.60174 -34.83556 -34.04069 -33.28712 -32.13165 -31.97198 -30.35150 -29.06229 -26.34455 -25.54614 -24.73924 -24.22771 -23.69062 -21.75560 -21.68405 -21.25659 -20.63699 -19.54576 -18.58451 -17.62383 -17.34114 -17.20746 -16.99576 -16.88609 -16.68821 -16.42629 -15.89574 -15.81022 -15.62318 -15.22312 -14.91991 -14.73955 -14.58948 -14.51623 -14.30737 -14.14301 -13.79183 -13.45801 -13.39928 -13.09908 -12.90011 -12.85968 -12.71048 -12.46698 -12.34536 -12.15410 -12.10662 -11.98474 -11.83467 -11.81755 -11.75782 -11.56938 -11.38406 -11.34638 -10.97259 -10.96078 -10.69704 -10.52730 -10.07174 -9.28124 -8.03193 -5.35819 1.37158 1.39969 1.47415 1.59299 1.94434 2.47822 2.71086 2.94054 3.28461 3.51493 3.54955 3.70085 3.71499 3.75118 3.81127 3.95287 4.00704 4.02220 4.04758 4.15882 4.23847 4.34822 4.36223 4.46630 4.47675 4.49541 4.55186 4.59965 4.63857 4.68013 4.73733 4.74478 4.78281 4.80235 4.84639 4.91163 5.02253 5.02819 5.09213 5.13116 5.15465 5.17798 5.20843 5.34267 5.50621 5.57987 5.76127 6.14784 6.19870 6.21337 6.55140 7.08485 7.23555 7.85932 8.04217 9.18434 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.039042 B = 0.001406 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.004850 B =19913.335093 C =20286.725048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.252 1.252 6 H -0.296 1.296 7 C -0.234 4.234 8 H 0.057 0.943 9 N -0.759 5.759 10 C 0.162 3.838 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.146 3.854 16 H 0.079 0.921 17 N -0.708 5.708 18 C 0.517 3.483 19 O -0.586 6.586 20 C -0.131 4.131 21 C 0.079 3.921 22 O -0.390 6.390 23 C 0.084 3.916 24 C -0.177 4.177 25 C 0.061 3.939 26 O -0.403 6.403 27 C 0.060 3.940 28 C -0.149 4.149 29 C -0.107 4.107 30 H 0.257 0.743 31 H 0.365 0.635 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.418 0.582 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.063 0.937 49 H 0.114 0.886 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.086 0.914 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.472 -16.968 -5.600 39.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.780 3.220 4 H -0.205 1.205 5 H -0.177 1.177 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.075 0.925 9 N -0.404 5.404 10 C 0.037 3.963 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.041 3.959 16 H 0.097 0.903 17 N -0.360 5.360 18 C 0.305 3.695 19 O -0.466 6.466 20 C -0.171 4.171 21 C 0.002 3.998 22 O -0.310 6.310 23 C 0.026 3.974 24 C -0.215 4.215 25 C -0.015 4.015 26 O -0.322 6.322 27 C -0.016 4.016 28 C -0.187 4.187 29 C -0.145 4.145 30 H 0.066 0.934 31 H 0.198 0.802 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.256 0.744 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.125 0.875 48 H 0.081 0.919 49 H 0.132 0.868 50 H 0.108 0.892 51 H 0.091 0.909 52 H 0.105 0.895 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 35.729 -16.655 -5.596 39.815 hybrid contribution -0.706 1.441 0.133 1.610 sum 35.023 -15.213 -5.463 38.573 Atomic orbital electron populations 1.69888 1.07117 1.26633 1.59854 1.25489 0.96088 1.01181 1.02727 0.85435 0.78689 0.79739 0.78110 1.20466 1.17666 1.22248 1.19076 0.82873 0.93487 1.41114 0.92459 1.42742 1.02409 1.04391 1.90907 1.20841 0.90088 0.87171 0.98246 1.22053 0.93584 0.97754 0.98004 0.90672 1.22098 0.96292 0.99717 0.97149 1.22447 0.96039 0.98815 0.98993 1.21719 0.93010 0.86049 0.95099 0.90285 1.45933 1.07030 1.17298 1.65733 1.20848 0.82519 0.89309 0.76858 1.90711 1.66893 1.36358 1.52681 1.21440 0.93748 0.96470 1.05399 1.22106 0.91838 0.87617 0.98230 1.87837 1.19882 1.37358 1.85933 1.22238 0.80816 0.97983 0.96348 1.22702 0.97951 1.02655 0.98148 1.22662 0.90926 0.84781 1.03169 1.87925 1.75840 1.34999 1.33467 1.22737 0.93922 1.00729 0.84219 1.22283 0.96018 0.96433 1.03989 1.22667 0.92680 0.96813 1.02327 0.93376 0.80195 0.95585 0.95503 0.92083 0.92822 0.90815 0.92455 0.74434 0.85857 0.86217 0.93421 0.93125 0.91487 0.90980 0.90397 0.92039 0.87508 0.91890 0.86834 0.89171 0.90918 0.89492 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.43 13.97 21.65 0.30 -63.12 16 2 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 3 Si 0.95 45.77 27.74 68.60 1.90 47.67 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 6 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.23 -13.43 10.47 84.03 0.88 -12.55 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 9 N -0.76 -35.17 5.27 -343.45 -1.81 -36.98 16 10 C 0.16 5.84 5.58 86.38 0.48 6.32 16 11 C -0.09 -2.54 2.90 -9.72 -0.03 -2.57 16 12 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 13 C -0.11 -3.05 6.14 31.32 0.19 -2.86 16 14 C -0.12 -2.74 6.53 31.32 0.20 -2.54 16 15 C 0.15 2.84 3.15 46.12 0.15 2.99 16 16 H 0.08 1.81 7.67 -2.38 -0.02 1.79 16 17 N -0.71 -10.41 5.12 -437.18 -2.24 -12.64 16 18 C 0.52 9.20 7.82 87.66 0.69 9.89 16 19 O -0.59 -15.67 15.69 -3.03 -0.05 -15.71 16 20 C -0.13 -1.52 6.07 29.85 0.18 -1.33 16 21 C 0.08 1.19 5.04 71.98 0.36 1.55 16 22 O -0.39 -5.97 10.00 -148.98 -1.49 -7.46 16 23 C 0.08 1.05 2.70 30.71 0.08 1.13 16 24 C -0.18 -2.10 5.76 30.68 0.18 -1.92 16 25 C 0.06 0.64 6.84 72.01 0.49 1.13 16 26 O -0.40 -5.57 10.77 -148.98 -1.60 -7.17 16 27 C 0.06 0.54 6.84 72.01 0.49 1.04 16 28 C -0.15 -1.53 5.79 30.68 0.18 -1.36 16 29 C -0.11 -2.01 5.94 31.94 0.19 -1.82 16 30 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 31 H 0.37 16.25 5.44 -92.71 -0.50 15.75 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.03 0.98 8.01 -2.38 -0.02 0.96 16 34 H 0.06 1.77 7.74 -2.38 -0.02 1.75 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.42 3.55 8.54 -92.71 -0.79 2.76 16 39 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 0.80 7.95 -2.39 -0.02 0.78 16 42 H 0.05 0.83 8.04 -2.39 -0.02 0.81 16 43 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 0.89 7.99 -2.39 -0.02 0.87 16 46 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.09 1.49 7.95 -2.38 -0.02 1.47 16 Total: -1.00 -75.65 417.88 -0.27 -75.91 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.47 Total: 25.71 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.19 Total: -6.20 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.74 Total: -112.75 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -3.14 Total: -30.34 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.90 Total: 47.67 kcal Total: -75.65 -0.27 -75.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700906019.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.529 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds