Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99652 * 2 1 4 4 C 1.52995 * 109.47034 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47384 * 64.99873 * 4 3 2 6 6 C 1.42897 * 114.00508 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47255 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00211 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99812 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99853 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.86664 * 23.73835 * 10 9 7 12 12 C 1.52245 * 113.10384 * 251.63101 * 10 9 7 13 13 H 1.08997 * 113.67160 * 103.47982 * 12 10 9 14 14 C 1.51671 * 113.54123 * 334.34261 * 12 10 9 15 15 C 1.53026 * 110.03998 * 213.36524 * 14 12 10 16 16 C 1.52938 * 108.93126 * 63.75243 * 15 14 12 17 17 N 1.45893 * 109.88918 * 302.65375 * 16 15 14 18 18 C 1.36934 * 118.48857 * 219.36025 * 17 16 15 19 19 H 1.08002 * 120.00266 * 153.34127 * 18 17 16 20 20 C 1.38813 * 119.99786 * 333.34456 * 18 17 16 21 21 N 1.31622 * 119.99784 * 344.14404 * 20 18 17 22 22 Si 1.86796 * 120.00216 * 164.14157 * 20 18 17 23 23 H 1.48502 * 109.47154 * 60.00308 * 22 20 18 24 24 H 1.48498 * 109.47534 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47436 * 300.00553 * 22 20 18 26 26 C 1.45099 * 123.03342 * 39.33632 * 17 16 15 27 27 H 1.08997 * 112.25771 * 204.21329 * 26 17 16 28 28 C 1.53386 * 114.62716 * 73.76517 * 26 17 16 29 29 C 1.53005 * 113.68512 * 331.11838 * 28 26 17 30 30 C 1.52999 * 113.68365 * 102.14960 * 28 26 17 31 31 H 1.08999 * 109.47781 * 60.00372 * 1 2 3 32 32 H 1.09005 * 109.46734 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47174 * 300.00003 * 1 2 3 34 34 H 1.09005 * 109.47376 * 59.99563 * 3 2 1 35 35 H 1.09004 * 109.47237 * 300.00079 * 3 2 1 36 36 H 1.09001 * 109.47210 * 304.99844 * 4 3 2 37 37 H 1.09003 * 109.47264 * 184.99821 * 4 3 2 38 38 H 1.09002 * 109.46580 * 59.99451 * 6 5 4 39 39 H 1.09000 * 109.46783 * 300.00183 * 6 5 4 40 40 H 0.96998 * 120.00108 * 0.02562 * 9 7 6 41 41 H 1.09003 * 109.89319 * 92.73765 * 14 12 10 42 42 H 1.09000 * 108.43517 * 333.08516 * 14 12 10 43 43 H 1.09007 * 109.55943 * 303.91571 * 15 14 12 44 44 H 1.08994 * 109.55812 * 183.58885 * 15 14 12 45 45 H 1.08991 * 109.40203 * 62.77932 * 16 15 14 46 46 H 1.08999 * 109.40227 * 182.52792 * 16 15 14 47 47 H 0.96999 * 119.99867 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.47068 * 91.64833 * 29 28 26 49 49 H 1.09004 * 109.46893 * 211.64481 * 29 28 26 50 50 H 1.08996 * 109.47016 * 331.64240 * 29 28 26 51 51 H 1.08999 * 109.47064 * 60.00607 * 30 28 26 52 52 H 1.09003 * 109.46826 * 180.02562 * 30 28 26 53 53 H 1.08997 * 109.47625 * 300.00041 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2219 6 6 5.3811 0.4203 -1.3251 7 6 5.7193 -0.2242 -2.6447 8 8 4.8347 -0.5176 -3.4206 9 7 7.0051 -0.4735 -2.9629 10 6 7.3338 -1.1006 -4.2455 11 1 6.5637 -0.9475 -5.0015 12 6 7.8033 -2.5418 -4.1029 13 1 7.0475 -3.2775 -4.3776 14 6 8.4180 -2.8477 -2.7505 15 6 9.5341 -3.8833 -2.9039 16 6 10.6516 -3.2853 -3.7600 17 7 10.1185 -2.8714 -5.0534 18 6 10.8784 -3.0866 -6.1721 19 1 10.4018 -3.2078 -7.1337 20 6 12.2614 -3.1489 -6.0702 21 7 12.8624 -2.7006 -4.9885 22 14 13.2694 -3.8690 -7.4683 23 1 13.0361 -3.0798 -8.7044 24 1 14.7110 -3.8214 -7.1149 25 1 12.8626 -5.2788 -7.6970 26 6 8.8201 -2.2428 -5.2094 27 1 8.4106 -2.3840 -6.2096 28 6 8.7559 -0.7838 -4.7405 29 6 9.7396 -0.4559 -3.6154 30 6 8.7991 0.2317 -5.8841 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.6884 1.8465 0.8900 35 1 1.6885 1.8464 -0.8900 36 1 3.8514 0.5684 0.8409 37 1 3.9784 2.1767 0.0889 38 1 5.7358 -0.2117 -0.5109 39 1 5.8620 1.3965 -1.2632 40 1 7.7126 -0.2385 -2.3425 41 1 7.6546 -3.2334 -2.0749 42 1 8.8316 -1.9251 -2.3433 43 1 9.1396 -4.7756 -3.3901 44 1 9.9270 -4.1445 -1.9214 45 1 11.0753 -2.4205 -3.2496 46 1 11.4306 -4.0323 -3.9117 47 1 13.8288 -2.7445 -4.9171 48 1 10.6745 -0.0951 -4.0440 49 1 9.3131 0.3146 -2.9731 50 1 9.9317 -1.3535 -3.0277 51 1 7.9511 0.0668 -6.5487 52 1 8.7501 1.2411 -5.4756 53 1 9.7273 0.1108 -6.4425 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707181531.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -82.316473 kcal Electronic energy + Delta-G solvation = -31554.815131 eV Core-core repulsion = 27428.283363 eV Total energy + Delta-G solvation = -4126.531769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49752 -40.33143 -39.13661 -37.91472 -36.84217 -34.52201 -34.45424 -32.20756 -31.60204 -31.40345 -28.79891 -28.31858 -27.22452 -27.09038 -25.82757 -24.03632 -23.47543 -22.76562 -21.33378 -20.79173 -19.18712 -18.71459 -18.25318 -17.85413 -17.78701 -17.05450 -16.83232 -16.56190 -16.34696 -16.16301 -16.01772 -15.75398 -15.35284 -15.06190 -14.84321 -14.74695 -14.25080 -14.01131 -13.77135 -13.67535 -13.44898 -13.34780 -13.06770 -12.95658 -12.89185 -12.80455 -12.79138 -12.49499 -12.42989 -12.32663 -12.11274 -11.99417 -11.96248 -11.55507 -11.42266 -11.18175 -10.94192 -10.84131 -10.67685 -10.63997 -10.57547 -10.29741 -9.82425 -8.52233 -7.78786 -5.23159 1.47335 1.49369 1.54977 1.64290 1.89458 2.54712 2.89922 3.04711 3.32873 3.55733 3.69346 3.75735 3.85262 3.92907 4.04034 4.12349 4.24962 4.28030 4.29974 4.36293 4.45240 4.46754 4.49501 4.52519 4.58835 4.61148 4.63711 4.70605 4.72828 4.80539 4.84227 4.86814 4.89335 4.97260 5.05437 5.12855 5.14367 5.19126 5.31080 5.36745 5.41979 5.57888 5.60619 5.61735 5.74034 5.76202 6.00771 6.09378 6.29183 6.45934 6.64615 7.26750 7.30803 8.04234 8.39313 9.23468 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027470 B = 0.002296 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.032731 B =12193.217996 C =12379.358865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.056 3.944 4 C 0.055 3.945 5 O -0.395 6.395 6 C 0.046 3.954 7 C 0.509 3.491 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.149 3.851 11 H 0.098 0.902 12 C -0.126 4.126 13 H 0.059 0.941 14 C -0.095 4.095 15 C -0.136 4.136 16 C 0.188 3.812 17 N -0.578 5.578 18 C -0.267 4.267 19 H 0.057 0.943 20 C -0.039 4.039 21 N -0.923 5.923 22 Si 0.955 3.045 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.285 1.285 26 C 0.167 3.833 27 H 0.062 0.938 28 C -0.105 4.105 29 C -0.130 4.130 30 C -0.123 4.123 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.413 0.587 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.026 0.974 46 H 0.029 0.971 47 H 0.248 0.752 48 H 0.031 0.969 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.053 0.947 52 H 0.059 0.941 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.774 10.295 14.923 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.020 4.020 4 C -0.021 4.021 5 O -0.314 6.314 6 C -0.033 4.033 7 C 0.296 3.704 8 O -0.456 6.456 9 N -0.351 5.351 10 C 0.043 3.957 11 H 0.116 0.884 12 C -0.148 4.148 13 H 0.078 0.922 14 C -0.132 4.132 15 C -0.174 4.174 16 C 0.063 3.937 17 N -0.297 5.297 18 C -0.398 4.398 19 H 0.074 0.926 20 C -0.235 4.235 21 N -0.568 5.568 22 Si 0.784 3.216 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.211 1.211 26 C 0.058 3.942 27 H 0.080 0.920 28 C -0.109 4.109 29 C -0.187 4.187 30 C -0.180 4.180 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.252 0.748 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.072 0.928 52 H 0.078 0.922 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.246 9.863 14.297 24.477 hybrid contribution 1.184 -0.222 -0.922 1.517 sum -16.062 9.641 13.375 23.018 Atomic orbital electron populations 1.22889 0.79756 1.03512 1.00835 1.87933 1.21320 1.28974 1.95594 1.22770 0.92358 0.84908 1.01974 1.22870 0.93774 0.99075 0.86372 1.88042 1.20739 1.82897 1.39739 1.22333 0.83734 1.02706 0.94536 1.20968 0.82498 0.78119 0.88825 1.90696 1.48361 1.53564 1.53012 1.45811 1.07301 1.61871 1.20094 1.22026 0.95607 0.92259 0.85830 0.88391 1.22572 0.97765 0.96707 0.97716 0.92230 1.21186 0.97165 0.99971 0.94840 1.21944 0.97275 0.98241 0.99955 1.20417 0.92481 0.96346 0.84433 1.43276 1.15335 1.67344 1.03739 1.19402 0.88530 1.42763 0.89062 0.92571 1.25550 0.97665 1.01025 0.99283 1.70167 1.08125 1.49052 1.29478 0.85543 0.77596 0.78589 0.79859 1.20707 1.22027 1.21107 1.21243 0.85893 0.91289 0.95802 0.91985 1.22905 0.93189 0.98151 0.96616 1.21919 0.97128 1.02272 0.97369 1.21574 1.00639 0.98370 0.97436 0.93896 0.89349 0.92154 0.88677 0.93020 0.91355 0.88518 0.87608 0.86905 0.74770 0.91541 0.89581 0.93811 0.90591 0.95596 0.95267 0.94323 0.94973 0.91394 0.89497 0.92799 0.92237 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.01 10.67 -144.34 -1.54 -10.55 16 3 C 0.06 0.85 6.32 71.98 0.45 1.30 16 4 C 0.05 0.80 6.32 71.98 0.45 1.25 16 5 O -0.39 -9.46 9.84 -125.55 -1.24 -10.69 16 6 C 0.05 0.84 6.42 71.23 0.46 1.29 16 7 C 0.51 13.86 7.91 87.65 0.69 14.55 16 8 O -0.58 -22.04 16.10 16.03 0.26 -21.78 16 9 N -0.70 -17.11 4.35 -442.35 -1.92 -19.04 16 10 C 0.15 4.59 3.65 45.03 0.16 4.75 16 11 H 0.10 3.35 7.30 -2.39 -0.02 3.33 16 12 C -0.13 -4.28 4.00 -11.46 -0.05 -4.32 16 13 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 14 C -0.09 -2.85 4.68 30.17 0.14 -2.71 16 15 C -0.14 -4.79 6.06 30.58 0.19 -4.61 16 16 C 0.19 8.49 4.00 86.47 0.35 8.84 16 17 N -0.58 -27.40 2.67 -681.83 -1.82 -29.22 16 18 C -0.27 -14.35 9.46 84.03 0.80 -13.55 16 19 H 0.06 3.04 7.85 -2.91 -0.02 3.02 16 20 C -0.04 -2.12 4.86 84.86 0.41 -1.71 16 21 N -0.92 -51.92 11.05 21.65 0.24 -51.68 16 22 Si 0.95 44.73 29.58 68.60 2.03 46.76 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 C 0.17 6.72 3.60 45.45 0.16 6.89 16 27 H 0.06 2.62 7.97 -2.39 -0.02 2.60 16 28 C -0.10 -3.54 1.35 -51.80 -0.07 -3.61 16 29 C -0.13 -4.29 6.84 71.98 0.49 -3.79 16 30 C -0.12 -4.10 9.16 71.98 0.66 -3.44 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.41 7.89 5.67 -92.71 -0.53 7.37 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 2.36 3.65 -2.39 -0.01 2.35 16 43 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.03 1.24 5.66 -2.39 -0.01 1.22 16 46 H 0.03 1.52 6.55 -2.39 -0.02 1.51 16 47 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 48 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 49 H 0.07 1.66 6.54 -2.38 -0.02 1.65 16 50 H 0.09 3.00 1.99 -2.39 0.00 2.99 16 51 H 0.05 1.68 7.95 -2.39 -0.02 1.66 16 52 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.48 400.83 2.94 -70.54 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.38 Total: 22.91 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 6.55 Total: 2.75 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -3.50 Total: -99.94 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.52 Total: -43.02 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.48 2.94 -70.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707181531.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.778 kcal (2) G-P(sol) polarization free energy of solvation -73.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds