Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99588 * 2 1 4 4 H 1.48502 * 109.46973 * 270.00131 * 3 2 1 5 5 H 1.48494 * 109.47095 * 30.00171 * 3 2 1 6 6 H 1.48500 * 109.46914 * 150.00419 * 3 2 1 7 7 C 1.38812 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99894 * 201.91472 * 7 2 1 9 9 N 1.36931 * 119.99987 * 21.91135 * 7 2 1 10 10 C 1.46500 * 120.00305 * 35.10167 * 9 7 2 11 11 C 1.53000 * 109.46953 * 92.19598 * 10 9 7 12 12 O 1.42894 * 109.47244 * 64.99955 * 11 10 9 13 13 C 1.46501 * 120.00060 * 215.10630 * 9 7 2 14 14 H 1.09003 * 109.49909 * 179.97438 * 13 9 7 15 15 C 1.53040 * 109.49802 * 59.83532 * 13 9 7 16 16 C 1.53039 * 109.53851 * 178.68562 * 15 13 9 17 17 C 1.53194 * 109.31507 * 61.36721 * 16 15 13 18 18 N 1.46932 * 108.77147 * 305.36712 * 17 16 15 19 19 C 1.34777 * 120.63015 * 233.58516 * 18 17 16 20 20 O 1.21273 * 120.00405 * 180.02562 * 19 18 17 21 21 C 1.50705 * 119.99912 * 0.02562 * 19 18 17 22 22 C 1.52996 * 109.47104 * 179.97438 * 21 19 18 23 23 H 1.08999 * 109.48378 * 305.00094 * 22 21 19 24 24 C 1.53091 * 109.48035 * 184.97630 * 22 21 19 25 25 C 1.53176 * 109.16461 * 182.40779 * 24 22 21 26 26 C 1.53181 * 109.03648 * 56.98258 * 25 24 22 27 27 C 1.53089 * 109.16097 * 303.01944 * 26 25 24 28 28 O 1.42905 * 109.48059 * 65.02519 * 22 21 19 29 29 C 1.46920 * 118.74143 * 53.60680 * 18 17 16 30 30 H 0.96990 * 119.99912 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47092 * 332.19707 * 10 9 7 32 32 H 1.08993 * 109.47364 * 212.19394 * 10 9 7 33 33 H 1.08995 * 109.47335 * 185.00615 * 11 10 9 34 34 H 1.09009 * 109.47117 * 305.00125 * 11 10 9 35 35 H 0.96704 * 113.99856 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.45968 * 298.70523 * 15 13 9 37 37 H 1.08998 * 109.45858 * 58.66534 * 15 13 9 38 38 H 1.08998 * 109.49839 * 301.41477 * 16 15 13 39 39 H 1.09002 * 109.52548 * 181.33290 * 16 15 13 40 40 H 1.08992 * 109.58894 * 185.57982 * 17 16 15 41 41 H 1.09002 * 109.70383 * 65.21948 * 17 16 15 42 42 H 1.08999 * 109.47053 * 300.00433 * 21 19 18 43 43 H 1.09002 * 109.46855 * 59.99989 * 21 19 18 44 44 H 1.09002 * 109.52649 * 302.31702 * 24 22 21 45 45 H 1.09006 * 109.52426 * 62.44152 * 24 22 21 46 46 H 1.08999 * 109.54557 * 176.84522 * 25 24 22 47 47 H 1.08998 * 109.54664 * 297.02622 * 25 24 22 48 48 H 1.09002 * 109.51748 * 62.92381 * 26 25 24 49 49 H 1.08996 * 109.52161 * 183.11317 * 26 25 24 50 50 H 1.09005 * 109.48173 * 177.58628 * 27 26 25 51 51 H 1.09000 * 109.48476 * 297.61136 * 27 26 25 52 52 H 1.09007 * 109.59006 * 186.60501 * 29 18 17 53 53 H 1.08999 * 109.59025 * 66.17821 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0319 -1.2360 0.3485 9 7 1.4000 -2.3450 -0.4436 10 6 0.4427 -2.2822 -1.5508 11 6 1.1749 -2.5239 -2.8723 12 8 1.6913 -3.8561 -2.8941 13 6 1.7041 -3.6305 0.1897 14 1 1.1272 -4.4194 -0.2930 15 6 1.3416 -3.5666 1.6752 16 6 1.6283 -4.9195 2.3307 17 6 3.1228 -5.2341 2.2108 18 7 3.5107 -5.1547 0.7959 19 6 4.1405 -6.1852 0.1977 20 8 4.4560 -6.1074 -0.9707 21 6 4.4528 -7.4344 0.9808 22 6 5.1636 -8.4407 0.0736 23 1 4.5559 -8.6239 -0.8125 24 6 5.3700 -9.7546 0.8317 25 6 6.1351 -10.7358 -0.0617 26 6 7.4602 -10.0956 -0.4866 27 6 7.1732 -8.7685 -1.1938 28 8 6.4328 -7.9144 -0.3193 29 6 3.1995 -3.9305 0.0456 30 1 -0.4849 0.8400 0.0004 31 1 -0.0266 -1.2986 -1.5700 32 1 -0.3218 -3.0469 -1.4140 33 1 0.4811 -2.3895 -3.7020 34 1 1.9968 -1.8141 -2.9674 35 1 2.1687 -4.0797 -3.7048 36 1 1.9372 -2.7941 2.1614 37 1 0.2831 -3.3290 1.7807 38 1 1.0516 -5.6964 1.8287 39 1 1.3479 -4.8810 3.3833 40 1 3.3161 -6.2386 2.5869 41 1 3.6981 -4.5106 2.7886 42 1 5.0985 -7.1838 1.8223 43 1 3.5258 -7.8718 1.3518 44 1 5.9432 -9.5654 1.7393 45 1 4.4012 -10.1795 1.0947 46 1 6.3345 -11.6534 0.4917 47 1 5.5395 -10.9650 -0.9453 48 1 8.0756 -9.9132 0.3944 49 1 7.9863 -10.7648 -1.1674 50 1 8.1144 -8.2876 -1.4605 51 1 6.5921 -8.9559 -2.0967 52 1 3.4434 -4.0749 -1.0070 53 1 3.7792 -3.0989 0.4463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707213891.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -142.627043 kcal Electronic energy + Delta-G solvation = -31973.525182 eV Core-core repulsion = 27844.378150 eV Total energy + Delta-G solvation = -4129.147031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27199 -40.09559 -38.86604 -37.68389 -36.30493 -34.47063 -34.08951 -33.50737 -32.84847 -31.35028 -29.54099 -28.71291 -26.28706 -26.05471 -25.10029 -23.76629 -23.28968 -22.32974 -21.35238 -21.12636 -19.73378 -18.49082 -18.07548 -17.97888 -17.45203 -16.94118 -16.86984 -16.49480 -16.26793 -15.91333 -15.53203 -15.33646 -15.31708 -15.23298 -14.88151 -14.60519 -14.44255 -14.14051 -13.87881 -13.73541 -13.52389 -13.45457 -13.17175 -13.16721 -13.02265 -12.78890 -12.71493 -12.34602 -12.17274 -12.13307 -11.98709 -11.91277 -11.87032 -11.65239 -11.60956 -11.49691 -11.22380 -11.17864 -10.73803 -10.66043 -10.51975 -10.25546 -9.54843 -8.53006 -7.81970 -5.39465 1.44653 1.48301 1.55394 1.80592 2.12676 2.52137 2.90345 3.23358 3.53124 3.61990 3.72286 3.79318 3.98576 4.00474 4.12260 4.13384 4.16556 4.23526 4.27176 4.34022 4.42823 4.50343 4.51821 4.54989 4.59971 4.61467 4.68635 4.75289 4.80648 4.81242 4.89982 4.94206 4.98700 5.01703 5.04207 5.11872 5.14280 5.17328 5.22200 5.25069 5.26519 5.43889 5.50819 5.62079 5.62898 5.68502 5.77837 6.40536 6.47193 6.64244 6.99478 7.17610 7.36077 7.86702 8.41954 9.15551 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.002844 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.615246 B = 9842.866389 C =10187.979290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.034 4.034 3 Si 0.951 3.049 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.250 4.250 8 H 0.052 0.948 9 N -0.585 5.585 10 C 0.147 3.853 11 C 0.067 3.933 12 O -0.578 6.578 13 C 0.181 3.819 14 H 0.040 0.960 15 C -0.116 4.116 16 C -0.123 4.123 17 C 0.106 3.894 18 N -0.611 5.611 19 C 0.504 3.496 20 O -0.581 6.581 21 C -0.125 4.125 22 C 0.102 3.898 23 H 0.041 0.959 24 C -0.143 4.143 25 C -0.124 4.124 26 C -0.150 4.150 27 C 0.055 3.945 28 O -0.397 6.397 29 C 0.124 3.876 30 H 0.252 0.748 31 H 0.088 0.912 32 H 0.021 0.979 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.378 0.622 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.039 0.961 52 H 0.061 0.939 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.017 -21.299 4.260 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.231 4.231 3 Si 0.780 3.220 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.380 4.380 8 H 0.070 0.930 9 N -0.305 5.305 10 C 0.020 3.980 11 C -0.013 4.013 12 O -0.383 6.383 13 C 0.074 3.926 14 H 0.058 0.942 15 C -0.156 4.156 16 C -0.161 4.161 17 C -0.016 4.016 18 N -0.345 5.345 19 C 0.293 3.707 20 O -0.461 6.461 21 C -0.164 4.164 22 C 0.044 3.956 23 H 0.059 0.941 24 C -0.181 4.181 25 C -0.161 4.161 26 C -0.188 4.188 27 C -0.022 4.022 28 O -0.317 6.317 29 C -0.001 4.001 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.225 0.775 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.157 0.843 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.110 0.890 51 H 0.057 0.943 52 H 0.079 0.921 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.848 -20.955 4.325 23.154 hybrid contribution 0.295 1.540 -1.204 1.976 sum 9.142 -19.415 3.121 21.686 Atomic orbital electron populations 1.70076 1.06487 1.25933 1.53630 1.25664 0.95626 1.00936 1.00917 0.85525 0.78447 0.80545 0.77494 1.21471 1.21915 1.19839 1.19086 0.93983 0.86672 1.38304 0.92999 1.43866 1.49538 1.02465 1.34628 1.21009 0.90674 1.01151 0.85131 1.22854 0.96519 0.82745 0.99157 1.86544 1.75904 1.31255 1.44632 1.20536 0.92643 0.87220 0.92226 0.94211 1.21808 0.99836 0.97352 0.96566 1.21904 0.96015 0.96175 1.02030 1.22010 0.95276 1.04406 0.79902 1.48331 1.57770 1.15693 1.12657 1.21339 0.76447 0.85410 0.87462 1.90657 1.54027 1.82381 1.19043 1.21869 1.03645 0.91764 0.99144 1.21878 0.84639 0.92967 0.96130 0.94089 1.22195 1.02620 0.94030 0.99226 1.21616 0.95825 0.98761 0.99909 1.22164 0.98497 0.96479 1.01634 1.22644 0.95925 0.91643 0.91965 1.87948 1.31022 1.45865 1.66830 1.21684 0.97270 0.84906 0.96192 0.93871 0.89457 0.96035 0.93351 0.95662 0.77546 0.93539 0.94559 0.91569 0.88373 0.85909 0.91102 0.86237 0.84315 0.90060 0.88798 0.89551 0.92151 0.90923 0.89569 0.89031 0.94290 0.92054 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.27 11.36 21.65 0.25 -52.03 16 2 C -0.03 -1.88 4.95 84.86 0.42 -1.46 16 3 Si 0.95 44.46 29.61 68.60 2.03 46.49 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.25 -13.54 8.25 84.03 0.69 -12.85 16 8 H 0.05 2.87 6.74 -2.91 -0.02 2.85 16 9 N -0.58 -29.51 2.36 -677.60 -1.60 -31.11 16 10 C 0.15 7.20 5.65 86.38 0.49 7.69 16 11 C 0.07 2.82 7.39 71.98 0.53 3.36 16 12 O -0.58 -23.50 12.53 -148.98 -1.87 -25.37 16 13 C 0.18 7.97 2.26 45.07 0.10 8.07 16 14 H 0.04 1.84 7.82 -2.39 -0.02 1.82 16 15 C -0.12 -4.52 5.11 30.62 0.16 -4.36 16 16 C -0.12 -3.21 6.08 30.67 0.19 -3.02 16 17 C 0.11 2.49 6.34 86.36 0.55 3.03 16 18 N -0.61 -20.14 2.97 -818.90 -2.43 -22.58 16 19 C 0.50 16.56 7.58 87.66 0.66 17.22 16 20 O -0.58 -24.79 14.83 10.76 0.16 -24.63 16 21 C -0.12 -2.57 3.76 29.85 0.11 -2.46 16 22 C 0.10 2.26 2.19 30.62 0.07 2.33 16 23 H 0.04 1.08 7.96 -2.39 -0.02 1.06 16 24 C -0.14 -1.97 5.42 30.68 0.17 -1.81 16 25 C -0.12 -1.59 6.03 30.71 0.19 -1.41 16 26 C -0.15 -2.17 6.14 30.68 0.19 -1.98 16 27 C 0.05 1.17 6.84 72.01 0.49 1.66 16 28 O -0.40 -10.95 9.64 -135.21 -1.30 -12.25 16 29 C 0.12 5.26 5.76 86.36 0.50 5.76 16 30 H 0.25 13.91 8.31 -92.72 -0.77 13.14 16 31 H 0.09 4.73 5.37 -2.39 -0.01 4.72 16 32 H 0.02 1.05 7.97 -2.39 -0.02 1.03 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.38 11.93 9.12 -74.05 -0.68 11.25 16 36 H 0.05 1.97 7.70 -2.39 -0.02 1.95 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.12 1.76 5.93 -2.39 -0.01 1.75 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.12 1.99 7.94 -2.39 -0.02 1.97 16 43 H 0.14 1.86 7.69 -2.39 -0.02 1.84 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 51 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.06 2.97 6.43 -2.38 -0.02 2.95 16 53 H 0.04 1.86 6.79 -2.39 -0.02 1.84 16 Total: -1.00 -74.06 404.13 0.94 -73.12 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.21 Total: 28.57 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 5.50 Total: 19.77 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.79 Total: -105.71 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -3.01 Total: -62.25 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -74.06 0.94 -73.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707213891.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.510 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds