Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48495 * 109.46909 * 275.36103 * 3 2 1 5 5 H 1.48498 * 109.47017 * 35.36021 * 3 2 1 6 6 H 1.48499 * 109.47007 * 155.36191 * 3 2 1 7 7 C 1.38812 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99784 * 337.49172 * 7 2 1 9 9 N 1.36935 * 120.00128 * 157.49325 * 7 2 1 10 10 C 1.46501 * 119.99861 * 322.43431 * 9 7 2 11 11 C 1.53002 * 109.46660 * 266.23544 * 10 9 7 12 12 O 1.42897 * 109.46943 * 66.22290 * 11 10 9 13 13 C 1.46499 * 120.00144 * 142.42509 * 9 7 2 14 14 H 1.08998 * 109.52525 * 180.08267 * 13 9 7 15 15 C 1.53042 * 109.49602 * 60.00342 * 13 9 7 16 16 C 1.53039 * 109.53889 * 178.68224 * 15 13 9 17 17 C 1.53192 * 109.31182 * 61.36713 * 16 15 13 18 18 N 1.46928 * 108.77591 * 305.36382 * 17 16 15 19 19 C 1.34779 * 120.63086 * 233.58908 * 18 17 16 20 20 O 1.21286 * 119.99892 * 180.02562 * 19 18 17 21 21 C 1.50696 * 120.00137 * 359.97438 * 19 18 17 22 22 C 1.52996 * 109.47219 * 180.02562 * 21 19 18 23 23 H 1.09002 * 109.47849 * 54.98104 * 22 21 19 24 24 C 1.53094 * 109.47936 * 174.99629 * 22 21 19 25 25 C 1.53185 * 109.16132 * 177.59001 * 24 22 21 26 26 C 1.53174 * 109.03597 * 303.02080 * 25 24 22 27 27 C 1.53095 * 109.16103 * 56.98201 * 26 25 24 28 28 O 1.42898 * 109.48111 * 294.94256 * 22 21 19 29 29 C 1.46931 * 118.73872 * 53.61103 * 18 17 16 30 30 H 0.97000 * 119.99592 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47275 * 26.23696 * 10 9 7 32 32 H 1.09000 * 109.47151 * 146.24341 * 10 9 7 33 33 H 1.08999 * 109.46839 * 186.22135 * 11 10 9 34 34 H 1.09001 * 109.47412 * 306.22116 * 11 10 9 35 35 H 0.96703 * 113.99999 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.46059 * 298.70081 * 15 13 9 37 37 H 1.08999 * 109.46098 * 58.66191 * 15 13 9 38 38 H 1.09005 * 109.49610 * 181.31463 * 16 15 13 39 39 H 1.08993 * 109.49854 * 301.41593 * 16 15 13 40 40 H 1.08997 * 109.59008 * 65.15111 * 17 16 15 41 41 H 1.09003 * 109.59128 * 185.43500 * 17 16 15 42 42 H 1.09007 * 109.46719 * 300.00025 * 21 19 18 43 43 H 1.09000 * 109.47146 * 60.00017 * 21 19 18 44 44 H 1.08993 * 109.52858 * 297.49868 * 24 22 21 45 45 H 1.09002 * 109.52190 * 57.69126 * 24 22 21 46 46 H 1.09001 * 109.53844 * 62.89160 * 25 24 22 47 47 H 1.09006 * 109.54133 * 183.15389 * 25 24 22 48 48 H 1.09001 * 109.52159 * 176.87943 * 26 25 24 49 49 H 1.08996 * 109.52631 * 297.01169 * 26 25 24 50 50 H 1.08996 * 109.48263 * 62.37328 * 27 26 25 51 51 H 1.08997 * 109.47794 * 182.39300 * 27 26 25 52 52 H 1.08996 * 109.58499 * 186.60549 * 29 18 17 53 53 H 1.08997 * 109.58697 * 66.17486 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3845 2.1118 -1.3939 5 1 1.5090 2.6173 0.8102 6 1 3.5999 1.4101 0.5837 7 6 2.0103 -1.2022 -0.0005 8 1 1.5319 -2.1020 0.3571 9 7 3.3014 -1.2472 -0.4545 10 6 3.7025 -0.4324 -1.6041 11 6 3.5809 -1.2616 -2.8841 12 8 2.2054 -1.5632 -3.1273 13 6 4.2817 -2.1100 0.2095 14 1 5.2474 -2.0131 -0.2866 15 6 3.8136 -3.5652 0.1364 16 6 4.8529 -4.4711 0.8008 17 6 4.9947 -4.0824 2.2758 18 7 5.3028 -2.6482 2.3594 19 6 6.3773 -2.2157 3.0485 20 8 6.6206 -1.0291 3.1104 21 6 7.2757 -3.2063 3.7431 22 6 8.4108 -2.4595 4.4465 23 1 7.9916 -1.7085 5.1162 24 6 9.2512 -3.4518 5.2544 25 6 10.4200 -2.7068 5.9066 26 6 11.2364 -2.0061 4.8163 27 6 10.3193 -1.0696 4.0254 28 8 9.2372 -1.8207 3.4713 29 6 4.4170 -1.6944 1.6778 30 1 -0.4849 0.8401 0.0004 31 1 3.0544 0.4412 -1.6741 32 1 4.7357 -0.1091 -1.4775 33 1 3.9825 -0.6946 -3.7238 34 1 4.1417 -2.1894 -2.7707 35 1 2.0529 -2.0878 -3.9253 36 1 2.8598 -3.6664 0.6541 37 1 3.6928 -3.8559 -0.9072 38 1 4.5300 -5.5097 0.7278 39 1 5.8132 -4.3520 0.2992 40 1 4.0606 -4.2865 2.7990 41 1 5.8011 -4.6585 2.7297 42 1 6.6987 -3.7661 4.4792 43 1 7.6936 -3.8949 3.0088 44 1 8.6331 -3.9078 6.0277 45 1 9.6374 -4.2263 4.5917 46 1 10.0346 -1.9656 6.6067 47 1 11.0542 -3.4168 6.4375 48 1 12.0379 -1.4280 5.2762 49 1 11.6636 -2.7514 4.1454 50 1 9.9253 -0.3003 4.6894 51 1 10.8856 -0.6002 3.2210 52 1 4.8439 -0.6933 1.7363 53 1 3.4357 -1.7039 2.1521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707213894.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -137.557180 kcal Electronic energy + Delta-G solvation = -31877.746341 eV Core-core repulsion = 27748.819156 eV Total energy + Delta-G solvation = -4128.927186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34073 -40.14698 -39.03042 -37.73361 -36.33751 -34.48691 -34.11930 -33.66248 -33.07850 -31.57186 -29.66036 -28.94332 -26.32374 -25.91687 -25.08739 -24.00921 -23.41531 -22.47102 -21.35126 -21.13978 -19.79088 -18.45277 -18.34570 -17.98825 -17.49644 -17.30904 -16.91365 -16.70295 -16.20093 -15.92263 -15.50271 -15.44490 -15.35089 -15.14579 -14.99778 -14.76145 -14.53472 -14.17750 -14.12154 -13.93712 -13.74170 -13.52234 -13.38782 -13.20820 -13.06961 -12.94814 -12.83716 -12.51138 -12.16875 -12.11053 -11.94392 -11.94033 -11.78208 -11.75212 -11.55635 -11.53287 -11.33448 -11.21605 -10.75579 -10.68928 -10.50646 -10.27917 -9.59928 -8.70133 -8.12120 -5.46289 1.24586 1.36655 1.45944 1.73874 2.04937 2.44379 2.88254 3.07999 3.32679 3.55086 3.68403 3.76826 3.96885 3.97444 4.02082 4.07875 4.13538 4.18755 4.25502 4.25977 4.33790 4.40726 4.45285 4.49709 4.51394 4.59665 4.61879 4.63681 4.73258 4.75593 4.78789 4.84290 4.92312 4.92955 5.00540 5.00902 5.03603 5.10051 5.11565 5.15918 5.20297 5.22555 5.42243 5.42354 5.57089 5.59919 6.01439 6.26784 6.37956 6.57899 7.02013 7.19069 7.29828 7.70296 8.10827 9.08265 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002986 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.648724 B = 9375.932085 C = 9849.710092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.012 4.012 3 Si 0.922 3.078 4 H -0.281 1.281 5 H -0.313 1.313 6 H -0.270 1.270 7 C -0.214 4.214 8 H 0.048 0.952 9 N -0.602 5.602 10 C 0.119 3.881 11 C 0.069 3.931 12 O -0.574 6.574 13 C 0.169 3.831 14 H 0.063 0.937 15 C -0.116 4.116 16 C -0.122 4.122 17 C 0.102 3.898 18 N -0.610 5.610 19 C 0.503 3.497 20 O -0.589 6.589 21 C -0.123 4.123 22 C 0.100 3.900 23 H 0.038 0.962 24 C -0.142 4.142 25 C -0.124 4.124 26 C -0.150 4.150 27 C 0.055 3.945 28 O -0.396 6.396 29 C 0.115 3.885 30 H 0.256 0.744 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.378 0.622 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.141 0.859 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.036 0.964 51 H 0.092 0.908 52 H 0.045 0.955 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.638 -14.240 7.280 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.208 4.208 3 Si 0.753 3.247 4 H -0.209 1.209 5 H -0.242 1.242 6 H -0.195 1.195 7 C -0.344 4.344 8 H 0.066 0.934 9 N -0.324 5.324 10 C -0.007 4.007 11 C -0.010 4.010 12 O -0.380 6.380 13 C 0.062 3.938 14 H 0.081 0.919 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.019 4.019 18 N -0.343 5.343 19 C 0.293 3.707 20 O -0.469 6.469 21 C -0.162 4.162 22 C 0.042 3.958 23 H 0.057 0.943 24 C -0.180 4.180 25 C -0.162 4.162 26 C -0.187 4.187 27 C -0.022 4.022 28 O -0.315 6.315 29 C -0.010 4.010 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.142 0.858 42 H 0.158 0.842 43 H 0.143 0.857 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.055 0.945 51 H 0.110 0.890 52 H 0.064 0.936 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.532 -13.200 7.675 27.218 hybrid contribution -0.408 1.556 -0.463 1.674 sum 22.124 -11.644 7.212 26.020 Atomic orbital electron populations 1.69980 1.07239 1.26514 1.55491 1.25816 0.95339 0.99928 0.99720 0.86191 0.79342 0.82481 0.76671 1.20853 1.24249 1.19535 1.18344 0.87330 0.92379 1.36325 0.93407 1.44168 1.06945 1.50794 1.30498 1.21481 0.98053 0.93834 0.87289 1.22758 0.82788 0.98590 0.96911 1.86844 1.25933 1.76238 1.48950 1.20809 0.91357 0.91349 0.90290 0.91876 1.21790 0.98768 0.94432 1.00516 1.21897 0.99168 1.00170 0.94803 1.22073 1.03254 0.78711 0.97853 1.48355 1.26192 1.08714 1.51053 1.21438 0.80805 0.89889 0.78571 1.90679 1.72963 1.20162 1.63121 1.21870 0.94837 0.97385 1.02117 1.21905 0.90139 0.93914 0.89887 0.94348 1.22191 0.97591 0.98048 1.00144 1.21626 0.97140 0.99947 0.97475 1.22160 0.98505 0.99703 0.98372 1.22638 0.87878 0.93392 0.98286 1.87941 1.42024 1.67743 1.33833 1.21781 0.92531 0.92292 0.94392 0.93449 0.94631 0.91122 0.92673 0.93061 0.77540 0.93792 0.92564 0.87989 0.90960 0.91047 0.85782 0.84158 0.85727 0.88778 0.89816 0.92335 0.89484 0.89685 0.90740 0.94540 0.89011 0.93619 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.47 13.97 21.65 0.30 -61.17 16 2 C -0.01 -0.75 5.28 84.86 0.45 -0.31 16 3 Si 0.92 49.80 25.06 68.60 1.72 51.52 16 4 H -0.28 -14.64 6.67 99.48 0.66 -13.98 16 5 H -0.31 -17.25 7.11 99.48 0.71 -16.54 16 6 H -0.27 -14.47 7.11 99.48 0.71 -13.76 16 7 C -0.21 -12.10 8.30 84.03 0.70 -11.41 16 8 H 0.05 2.97 7.03 -2.91 -0.02 2.95 16 9 N -0.60 -28.35 1.99 -677.59 -1.35 -29.70 16 10 C 0.12 5.19 4.72 86.38 0.41 5.60 16 11 C 0.07 2.49 7.38 71.98 0.53 3.02 16 12 O -0.57 -23.76 13.36 -148.98 -1.99 -25.75 16 13 C 0.17 6.56 2.78 45.07 0.13 6.68 16 14 H 0.06 2.32 7.85 -2.39 -0.02 2.30 16 15 C -0.12 -3.76 5.11 30.62 0.16 -3.60 16 16 C -0.12 -2.57 6.08 30.67 0.19 -2.39 16 17 C 0.10 2.08 6.34 86.36 0.55 2.63 16 18 N -0.61 -18.73 2.97 -818.88 -2.43 -21.16 16 19 C 0.50 15.79 7.58 87.66 0.66 16.45 16 20 O -0.59 -24.97 14.84 10.67 0.16 -24.81 16 21 C -0.12 -2.31 3.76 29.85 0.11 -2.20 16 22 C 0.10 2.12 2.19 30.62 0.07 2.18 16 23 H 0.04 0.99 7.95 -2.39 -0.02 0.98 16 24 C -0.14 -1.82 5.42 30.69 0.17 -1.65 16 25 C -0.12 -1.54 6.03 30.71 0.19 -1.35 16 26 C -0.15 -2.10 6.14 30.68 0.19 -1.91 16 27 C 0.05 1.15 6.84 72.01 0.49 1.64 16 28 O -0.40 -10.60 9.64 -135.27 -1.30 -11.90 16 29 C 0.12 4.71 5.76 86.36 0.50 5.21 16 30 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.04 1.78 3.47 -2.39 -0.01 1.77 16 32 H 0.07 2.75 8.00 -2.39 -0.02 2.73 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.38 11.03 9.12 -74.06 -0.68 10.35 16 36 H 0.04 1.66 7.05 -2.39 -0.02 1.64 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.12 1.42 5.95 -2.39 -0.01 1.40 16 42 H 0.14 1.61 7.94 -2.38 -0.02 1.59 16 43 H 0.12 1.77 7.69 -2.39 -0.02 1.75 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.05 2.19 7.00 -2.39 -0.02 2.17 16 53 H 0.05 2.29 7.50 -2.39 -0.02 2.28 16 Total: -1.00 -85.03 401.28 0.75 -84.28 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.17 Total: 20.09 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.47 Total: 18.60 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -3.48 Total: -112.03 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -3.14 Total: -62.46 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 1.72 Total: 51.52 kcal Total: -85.03 0.75 -84.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707213894.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.277 kcal (2) G-P(sol) polarization free energy of solvation -85.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds