Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00017 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99997 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64598 * 359.75480 * 9 7 2 11 11 C 1.54906 * 104.82959 * 204.09185 * 10 9 7 12 12 C 1.55155 * 101.58202 * 322.98796 * 11 10 9 13 13 H 1.09001 * 110.72222 * 277.14273 * 12 11 10 14 14 C 1.53007 * 110.72013 * 153.86851 * 12 11 10 15 15 C 1.52998 * 109.47036 * 175.00216 * 14 12 11 16 16 N 1.46503 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.34778 * 119.99997 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99875 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99899 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47099 * 179.97438 * 19 17 16 21 21 O 1.42898 * 109.47219 * 180.02562 * 20 19 17 22 22 C 1.42898 * 114.00125 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47102 * 179.97438 * 22 21 20 24 24 H 1.08998 * 110.33493 * 305.69554 * 23 22 21 25 25 C 1.54486 * 110.36950 * 183.45008 * 23 22 21 26 26 C 1.54508 * 104.05983 * 217.19091 * 25 23 22 27 27 C 1.54482 * 104.06510 * 0.02562 * 26 25 23 28 28 O 1.44426 * 110.37157 * 67.95108 * 23 22 21 29 29 C 1.47018 * 125.64732 * 179.44633 * 9 7 2 30 30 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36390 * 322.92656 * 10 9 7 32 32 H 1.08999 * 110.36503 * 85.25014 * 10 9 7 33 33 H 1.08996 * 111.00691 * 81.06419 * 11 10 9 34 34 H 1.09005 * 111.00459 * 204.92032 * 11 10 9 35 35 H 1.09000 * 109.46744 * 294.99821 * 14 12 11 36 36 H 1.08993 * 109.47100 * 54.99930 * 14 12 11 37 37 H 1.08995 * 109.47052 * 299.99922 * 15 14 12 38 38 H 1.09002 * 109.47177 * 59.99874 * 15 14 12 39 39 H 0.96998 * 119.99605 * 0.02562 * 16 15 14 40 40 H 1.08995 * 109.47575 * 300.00173 * 19 17 16 41 41 H 1.09002 * 109.46941 * 60.00301 * 19 17 16 42 42 H 1.08995 * 109.47220 * 300.00601 * 20 19 17 43 43 H 1.09002 * 109.46806 * 60.00429 * 20 19 17 44 44 H 1.09004 * 109.46791 * 299.99968 * 22 21 20 45 45 H 1.08999 * 109.47149 * 59.99695 * 22 21 20 46 46 H 1.08995 * 110.51269 * 335.83378 * 25 23 22 47 47 H 1.08995 * 110.51174 * 98.54603 * 25 23 22 48 48 H 1.09000 * 110.51225 * 118.64533 * 26 25 23 49 49 H 1.09007 * 110.51380 * 241.21777 * 26 25 23 50 50 H 1.08997 * 110.37293 * 142.81053 * 27 26 25 51 51 H 1.09006 * 110.37116 * 265.03793 * 27 26 25 52 52 H 1.09004 * 109.88164 * 298.39305 * 29 9 7 53 53 H 1.08996 * 109.88548 * 59.55836 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0051 11 6 -0.3991 -3.9340 0.6141 12 6 0.7785 -4.7525 0.0218 13 1 0.5418 -5.0952 -0.9855 14 6 1.1270 -5.9340 0.9293 15 6 2.2037 -6.7907 0.2603 16 7 2.5379 -7.9217 1.1295 17 6 3.4683 -8.8168 0.7429 18 8 4.0293 -8.6858 -0.3244 19 6 3.8124 -9.9799 1.6372 20 6 4.8882 -10.8373 0.9676 21 8 5.2140 -11.9405 1.8154 22 6 6.2153 -12.8086 1.2806 23 6 6.4832 -13.9469 2.2672 24 1 6.7332 -13.5459 3.2494 25 6 7.6241 -14.8504 1.7489 26 6 7.1912 -16.2752 2.1609 27 6 5.8397 -16.0642 2.8788 28 8 5.3329 -14.8157 2.3567 29 6 1.9318 -3.7274 -0.0126 30 1 -0.4851 0.8400 0.0004 31 1 -0.5967 -1.7606 0.6249 32 1 -0.5315 -2.4839 -1.0115 33 1 -0.3449 -3.9029 1.7023 34 1 -1.3578 -4.3336 0.2834 35 1 1.4999 -5.5616 1.8834 36 1 0.2354 -6.5377 1.0983 37 1 1.8309 -7.1630 -0.6939 38 1 3.0954 -6.1869 0.0913 39 1 2.0889 -8.0266 1.9829 40 1 4.1861 -9.6069 2.5908 41 1 2.9209 -10.5835 1.8074 42 1 4.5141 -11.2103 0.0142 43 1 5.7797 -10.2339 0.7971 44 1 5.8692 -13.2222 0.3333 45 1 7.1344 -12.2460 1.1173 46 1 7.7082 -14.7753 0.6648 47 1 8.5678 -14.5851 2.2255 48 1 7.0614 -16.9045 1.2805 49 1 7.9222 -16.7153 2.8393 50 1 5.1550 -16.8797 2.6461 51 1 5.9896 -15.9911 3.9560 52 1 2.5208 -3.8595 -0.9203 53 1 2.5654 -3.8554 0.8649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713730673.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -143.875725 kcal Electronic energy + Delta-G solvation = -28455.871345 eV Core-core repulsion = 24326.670166 eV Total energy + Delta-G solvation = -4129.201178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89488 -40.43730 -39.42546 -38.59821 -36.47441 -34.76037 -33.41264 -33.00784 -32.34204 -31.14357 -30.54383 -28.20261 -26.73318 -26.22106 -24.66920 -23.31953 -22.92315 -22.00846 -21.88582 -21.51378 -20.62622 -18.88883 -18.49854 -17.76687 -17.30829 -17.13885 -17.05282 -16.76921 -16.62245 -16.50311 -16.39079 -15.85622 -15.56793 -15.01454 -14.82691 -14.63047 -14.50442 -14.26706 -13.93390 -13.74103 -13.48583 -13.34669 -13.13502 -13.07744 -12.81587 -12.68657 -12.66417 -12.47266 -12.24203 -12.22497 -12.19420 -12.09083 -12.03267 -11.77468 -11.56522 -11.49597 -11.42720 -11.25834 -10.92594 -10.74329 -10.73016 -10.66778 -10.09387 -8.87415 -7.77559 -5.21691 1.45159 1.48552 1.55083 1.59836 1.96730 2.49599 2.75640 2.93548 3.31503 3.65636 3.72452 3.75502 3.77614 3.83013 3.94479 3.98842 4.03530 4.10760 4.16551 4.19189 4.30989 4.36326 4.38361 4.40613 4.50066 4.52760 4.55440 4.64935 4.72135 4.75185 4.77951 4.82601 4.83895 4.89948 4.90848 4.96137 5.05010 5.08893 5.12554 5.16178 5.20082 5.27139 5.43928 5.45159 5.52384 5.69669 5.83703 5.88988 6.13703 6.32309 6.54782 7.11724 7.23546 7.79987 8.43902 9.24143 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030282 B = 0.001304 C = 0.001268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.415493 B =21474.400812 C =22073.502483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.121 4.121 12 C -0.085 4.085 13 H 0.077 0.923 14 C -0.099 4.099 15 C 0.123 3.877 16 N -0.714 5.714 17 C 0.513 3.487 18 O -0.590 6.590 19 C -0.129 4.129 20 C 0.079 3.921 21 O -0.398 6.398 22 C 0.063 3.937 23 C 0.072 3.928 24 H 0.077 0.923 25 C -0.146 4.146 26 C -0.151 4.151 27 C 0.033 3.967 28 O -0.396 6.396 29 C 0.134 3.866 30 H 0.247 0.753 31 H 0.071 0.929 32 H -0.018 1.018 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.419 0.581 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.098 0.902 51 H 0.066 0.934 52 H 0.010 0.990 53 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.009 -34.378 8.393 37.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.160 4.160 12 C -0.105 4.105 13 H 0.095 0.905 14 C -0.137 4.137 15 C -0.001 4.001 16 N -0.366 5.366 17 C 0.301 3.699 18 O -0.471 6.471 19 C -0.168 4.168 20 C 0.002 3.998 21 O -0.317 6.317 22 C -0.013 4.013 23 C 0.015 3.985 24 H 0.095 0.905 25 C -0.184 4.184 26 C -0.189 4.189 27 C -0.043 4.043 28 O -0.316 6.316 29 C 0.009 3.991 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.000 1.000 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.257 0.743 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.114 0.886 50 H 0.116 0.884 51 H 0.085 0.915 52 H 0.028 0.972 53 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 11.061 -34.042 7.763 36.626 hybrid contribution 0.441 1.338 -0.336 1.448 sum 11.502 -32.704 7.427 35.454 Atomic orbital electron populations 1.70062 1.06164 1.25086 1.58492 1.25627 0.96667 1.00933 1.02648 0.85134 0.77170 0.78768 0.78154 1.20687 1.21643 1.20155 1.19431 0.90943 0.84119 1.42831 0.90573 1.44858 1.02930 1.00985 1.86721 1.21758 0.83914 0.95578 0.96345 1.22875 0.97917 0.95067 1.00109 1.22022 0.94785 0.93934 0.99716 0.90463 1.21626 0.98785 0.94930 0.98395 1.21290 0.98128 0.86884 0.93823 1.45891 1.41068 1.25963 1.23699 1.20896 0.78615 0.83823 0.86551 1.90715 1.53671 1.76857 1.25873 1.21412 1.01566 0.94124 0.99723 1.22064 0.97654 0.87329 0.92754 1.87815 1.59514 1.38696 1.45724 1.22733 0.91846 0.90320 0.96389 1.23135 0.86123 0.90398 0.98893 0.90491 1.22945 0.98376 0.94260 1.02819 1.22944 0.97195 0.96956 1.01789 1.23628 0.95887 0.86553 0.98250 1.89213 1.31588 1.24852 1.85962 1.21575 0.95283 0.85067 0.97200 0.94311 0.91137 0.99985 0.91294 0.89598 0.90626 0.88356 0.92053 0.93341 0.74334 0.85929 0.86028 0.93472 0.92973 0.92720 0.90140 0.90049 0.88363 0.90191 0.88634 0.88388 0.91528 0.97227 0.95533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 10.09 21.65 0.22 -57.34 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 3 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -14.20 10.27 84.03 0.86 -13.34 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -33.50 3.39 -691.97 -2.35 -35.85 16 10 C 0.15 7.47 5.88 86.85 0.51 7.98 16 11 C -0.12 -4.28 6.54 31.98 0.21 -4.08 16 12 C -0.09 -2.71 2.92 -9.60 -0.03 -2.74 16 13 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.10 -2.21 4.73 30.60 0.14 -2.06 16 15 C 0.12 2.89 5.56 86.38 0.48 3.37 16 16 N -0.71 -13.14 5.56 -463.06 -2.57 -15.72 16 17 C 0.51 11.31 7.83 87.66 0.69 11.99 16 18 O -0.59 -18.66 15.98 -3.04 -0.05 -18.71 16 19 C -0.13 -1.97 6.07 29.85 0.18 -1.79 16 20 C 0.08 1.49 5.23 71.98 0.38 1.87 16 21 O -0.40 -7.78 10.34 -148.60 -1.54 -9.31 16 22 C 0.06 0.97 5.54 71.98 0.40 1.37 16 23 C 0.07 0.98 3.57 31.10 0.11 1.09 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 C -0.15 -1.14 6.63 31.61 0.21 -0.93 16 26 C -0.15 -1.01 7.09 31.61 0.22 -0.78 16 27 C 0.03 0.35 7.63 72.49 0.55 0.90 16 28 O -0.40 -7.22 11.35 -148.60 -1.69 -8.91 16 29 C 0.13 5.63 6.24 86.73 0.54 6.18 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.07 4.02 5.89 -2.38 -0.01 4.00 16 32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 34 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.08 1.67 7.94 -2.39 -0.02 1.65 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16 39 H 0.42 4.72 8.47 -92.71 -0.79 3.93 16 40 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 43 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 0.60 7.87 -2.39 -0.02 0.58 16 47 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 50 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 52 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 53 H 0.03 1.09 7.69 -2.39 -0.02 1.08 16 Total: -1.00 -78.30 421.02 0.06 -78.23 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.08 Total: 13.33 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.93 Total: 5.64 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -4.70 Total: -108.90 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -3.27 Total: -36.94 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -78.30 0.06 -78.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713730673.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.641 kcal (2) G-P(sol) polarization free energy of solvation -78.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds