Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00153 * 2 1 4 4 H 1.48508 * 109.46926 * 269.99638 * 3 2 1 5 5 H 1.48499 * 109.47495 * 29.99330 * 3 2 1 6 6 H 1.48504 * 109.47463 * 149.99977 * 3 2 1 7 7 C 1.38813 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00060 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99950 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99791 * 180.27970 * 9 7 2 11 11 C 1.52996 * 109.47253 * 185.32538 * 10 9 7 12 12 H 1.09006 * 109.58023 * 298.51075 * 11 10 9 13 13 C 1.53193 * 109.59128 * 58.93430 * 11 10 9 14 14 C 1.53032 * 109.31440 * 174.42610 * 13 11 10 15 15 C 1.53042 * 109.53802 * 298.63583 * 14 13 11 16 16 C 1.53190 * 109.31375 * 61.36477 * 15 14 13 17 17 N 1.46917 * 108.77624 * 305.36662 * 16 15 14 18 18 C 1.34780 * 120.63364 * 233.58283 * 17 16 15 19 19 O 1.21279 * 119.99980 * 185.35074 * 18 17 16 20 20 C 1.50700 * 119.99692 * 5.35585 * 18 17 16 21 21 C 1.52998 * 109.47208 * 179.97438 * 20 18 17 22 22 O 1.42897 * 109.46922 * 179.97438 * 21 20 18 23 23 C 1.42903 * 113.99605 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.46897 * 180.02562 * 23 22 21 25 25 H 1.09000 * 109.86987 * 54.30086 * 24 23 22 26 26 C 1.54107 * 109.88072 * 175.30636 * 24 23 22 27 27 C 1.54811 * 104.18991 * 121.45284 * 26 24 23 28 28 C 1.54997 * 102.08972 * 20.88362 * 27 26 24 29 29 O 1.43742 * 109.88145 * 293.28973 * 24 23 22 30 30 H 0.96996 * 119.99811 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00209 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47094 * 305.32119 * 10 9 7 33 33 H 1.09000 * 109.47295 * 65.31798 * 10 9 7 34 34 H 1.09000 * 109.49633 * 294.38478 * 13 11 10 35 35 H 1.09002 * 109.49214 * 54.46827 * 13 11 10 36 36 H 1.09005 * 109.46083 * 178.61474 * 14 13 11 37 37 H 1.08995 * 109.44988 * 58.64944 * 14 13 11 38 38 H 1.09001 * 109.49905 * 301.41350 * 15 14 13 39 39 H 1.09006 * 109.52374 * 181.33579 * 15 14 13 40 40 H 1.09002 * 109.58793 * 185.57348 * 16 15 14 41 41 H 1.09003 * 109.58565 * 65.15403 * 16 15 14 42 42 H 1.09003 * 109.46728 * 299.99639 * 20 18 17 43 43 H 1.09000 * 109.47254 * 59.99440 * 20 18 17 44 44 H 1.08999 * 109.46893 * 300.00033 * 21 20 18 45 45 H 1.09007 * 109.46992 * 59.99483 * 21 20 18 46 46 H 1.08996 * 109.47527 * 299.99791 * 23 22 21 47 47 H 1.08996 * 109.47140 * 60.00487 * 23 22 21 48 48 H 1.09001 * 110.48656 * 240.13305 * 26 24 23 49 49 H 1.09008 * 110.48308 * 2.78008 * 26 24 23 50 50 H 1.08994 * 110.90353 * 139.07872 * 27 26 24 51 51 H 1.08998 * 110.90548 * 262.68371 * 27 26 24 52 52 H 1.08994 * 110.61859 * 81.47775 * 28 27 26 53 53 H 1.09001 * 110.61587 * 204.47716 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 -0.0046 11 6 5.6109 -2.1952 0.1312 12 1 5.9514 -1.6017 -0.7174 13 6 5.8772 -1.4341 1.4338 14 6 7.3871 -1.2836 1.6323 15 6 8.0295 -2.6683 1.7419 16 6 7.7876 -3.4433 0.4429 17 7 6.3445 -3.4676 0.1685 18 6 5.7057 -4.6350 -0.0455 19 8 4.5361 -4.6363 -0.3663 20 6 6.4448 -5.9386 0.1142 21 6 5.4970 -7.1020 -0.1837 22 8 6.1980 -8.3381 -0.0329 23 6 5.3987 -9.4946 -0.2893 24 6 6.2470 -10.7534 -0.0983 25 1 6.7050 -10.7449 0.8907 26 6 5.3664 -12.0080 -0.2573 27 6 6.0270 -12.7909 -1.4180 28 6 7.4641 -12.2103 -1.4246 29 8 7.2674 -10.8132 -1.1090 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 3.7788 -3.0866 0.8310 33 1 3.9225 -2.9958 -0.9409 34 1 5.4172 -0.4475 1.3792 35 1 5.4534 -1.9877 2.2716 36 1 7.5790 -0.7209 2.5460 37 1 7.8138 -0.7516 0.7820 38 1 7.5856 -3.2103 2.5769 39 1 9.1016 -2.5605 1.9070 40 1 8.1562 -4.4633 0.5518 41 1 8.3076 -2.9506 -0.3788 42 1 7.2850 -5.9671 -0.5796 43 1 6.8144 -6.0240 1.1361 44 1 4.6570 -7.0732 0.5103 45 1 5.1270 -7.0168 -1.2056 46 1 4.5572 -9.5156 0.4031 47 1 5.0261 -9.4590 -1.3130 48 1 5.3777 -12.6004 0.6576 49 1 4.3460 -11.7272 -0.5186 50 1 6.0405 -13.8603 -1.2078 51 1 5.5210 -12.5877 -2.3618 52 1 8.0760 -12.6916 -0.6618 53 1 7.9185 -12.3215 -2.4091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714130316.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -130.264567 kcal Electronic energy + Delta-G solvation = -30292.256944 eV Core-core repulsion = 26163.645990 eV Total energy + Delta-G solvation = -4128.610954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66500 -40.49877 -38.93928 -38.26968 -36.80410 -34.32350 -33.80394 -33.25805 -32.82023 -31.79605 -30.89703 -28.04055 -26.46178 -25.76406 -24.95883 -24.13589 -22.99736 -22.53396 -22.00038 -21.62837 -20.21035 -19.56884 -18.35561 -17.66447 -17.53205 -17.14406 -17.02690 -16.65420 -16.45029 -16.27689 -15.91401 -15.56623 -15.30222 -15.15392 -15.09610 -14.76028 -14.62108 -14.53001 -14.42238 -14.18568 -13.73523 -13.63628 -13.27884 -13.20546 -12.94262 -12.70285 -12.65717 -12.46324 -12.33073 -12.25394 -12.17217 -12.04013 -12.03247 -11.94698 -11.82698 -11.59992 -11.57881 -11.40388 -11.05918 -10.67507 -10.65169 -10.25489 -9.63677 -9.23916 -8.04396 -5.38551 1.33229 1.40104 1.47114 1.59327 1.79583 2.46662 2.60230 2.92238 3.25576 3.51317 3.60889 3.68834 3.81237 3.83488 3.88972 3.95855 3.96773 4.01098 4.07857 4.12937 4.18752 4.25686 4.30417 4.35881 4.40313 4.46673 4.48363 4.58340 4.61354 4.70618 4.74283 4.79548 4.80974 4.84827 4.91142 4.93604 4.96462 5.05441 5.06914 5.11050 5.17978 5.18126 5.24742 5.30074 5.47642 5.63800 5.72847 5.93117 6.13820 6.18387 6.43089 7.03509 7.19991 7.79498 8.03529 9.17942 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.002186 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.958075 B =12802.805055 C =14445.378474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.234 4.234 8 H 0.041 0.959 9 N -0.757 5.757 10 C 0.174 3.826 11 C 0.144 3.856 12 H 0.079 0.921 13 C -0.125 4.125 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.099 3.901 17 N -0.604 5.604 18 C 0.504 3.496 19 O -0.573 6.573 20 C -0.122 4.122 21 C 0.080 3.920 22 O -0.392 6.392 23 C 0.058 3.942 24 C 0.077 3.923 25 H 0.077 0.923 26 C -0.148 4.148 27 C -0.152 4.152 28 C 0.035 3.965 29 O -0.397 6.397 30 H 0.259 0.741 31 H 0.365 0.635 32 H 0.008 0.992 33 H 0.032 0.968 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.102 0.898 51 H 0.074 0.926 52 H 0.072 0.928 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.719 -22.291 2.138 34.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.171 1.171 7 C -0.365 4.365 8 H 0.059 0.941 9 N -0.405 5.405 10 C 0.049 3.951 11 C 0.040 3.960 12 H 0.096 0.904 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.168 4.168 16 C -0.022 4.022 17 N -0.337 5.337 18 C 0.294 3.706 19 O -0.452 6.452 20 C -0.161 4.161 21 C 0.003 3.997 22 O -0.312 6.312 23 C -0.019 4.019 24 C 0.019 3.981 25 H 0.095 0.905 26 C -0.186 4.186 27 C -0.189 4.189 28 C -0.041 4.041 29 O -0.317 6.317 30 H 0.068 0.932 31 H 0.199 0.801 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.117 0.883 49 H 0.103 0.897 50 H 0.121 0.879 51 H 0.093 0.907 52 H 0.090 0.910 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 25.243 -22.254 1.938 33.708 hybrid contribution -1.098 0.996 -0.088 1.485 sum 24.145 -21.258 1.850 32.223 Atomic orbital electron populations 1.69914 1.07297 1.26829 1.59681 1.25636 0.96331 1.01620 1.02403 0.85287 0.78728 0.78660 0.78347 1.20133 1.21742 1.17057 1.18930 0.82769 0.93154 1.41618 0.94095 1.42842 1.02539 1.04082 1.91066 1.21141 0.89739 0.85449 0.98812 1.21318 0.90798 0.85137 0.98725 0.90359 1.21895 0.98662 0.99754 0.96013 1.21547 0.92475 0.98230 1.03078 1.21928 1.02661 0.95149 0.97026 1.22171 0.77676 1.03772 0.98533 1.48223 1.10681 1.04655 1.70183 1.21097 0.86950 0.86388 0.76212 1.90843 1.18757 1.87274 1.48343 1.21433 0.99459 0.88514 1.06728 1.22023 0.94078 0.83348 1.00215 1.87801 1.38616 1.13673 1.91081 1.22907 0.93677 0.84668 1.00638 1.22841 0.88783 0.93796 0.92633 0.90527 1.22974 1.00009 0.94829 1.00772 1.23145 0.95362 1.01528 0.98904 1.23827 0.97341 0.80893 1.02054 1.88999 1.57788 1.26419 1.58460 0.93222 0.80125 0.97345 0.95020 0.92055 0.93106 0.90547 0.90639 0.92011 0.87421 0.86856 0.89443 0.85821 0.85922 0.93632 0.93873 0.90766 0.93106 0.88326 0.89740 0.87930 0.90701 0.91001 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.90 13.97 21.65 0.30 -66.59 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.96 47.39 27.74 68.60 1.90 49.29 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 7 C -0.23 -14.81 10.47 84.03 0.88 -13.93 16 8 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 9 N -0.76 -39.57 5.07 -343.44 -1.74 -41.31 16 10 C 0.17 8.06 4.14 86.38 0.36 8.41 16 11 C 0.14 4.73 3.06 44.97 0.14 4.87 16 12 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 13 C -0.12 -3.62 5.10 30.67 0.16 -3.46 16 14 C -0.12 -2.14 5.88 30.62 0.18 -1.96 16 15 C -0.13 -1.77 6.08 30.67 0.19 -1.58 16 16 C 0.10 1.47 6.35 86.36 0.55 2.02 16 17 N -0.60 -15.73 2.97 -795.03 -2.36 -18.09 16 18 C 0.50 15.07 7.53 87.66 0.66 15.73 16 19 O -0.57 -23.67 11.53 -3.03 -0.03 -23.71 16 20 C -0.12 -2.54 4.42 29.85 0.13 -2.41 16 21 C 0.08 2.01 5.23 71.98 0.38 2.39 16 22 O -0.39 -9.34 10.33 -147.06 -1.52 -10.86 16 23 C 0.06 1.14 5.39 71.98 0.39 1.53 16 24 C 0.08 1.29 3.70 30.97 0.11 1.40 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 C -0.15 -1.56 6.64 31.59 0.21 -1.35 16 27 C -0.15 -1.39 7.16 31.90 0.23 -1.16 16 28 C 0.03 0.43 7.72 72.67 0.56 0.99 16 29 O -0.40 -8.13 11.19 -147.06 -1.65 -9.78 16 30 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 31 H 0.36 17.43 4.55 -92.71 -0.42 17.01 16 32 H 0.01 0.44 7.24 -2.38 -0.02 0.42 16 33 H 0.03 1.66 6.24 -2.39 -0.01 1.64 16 34 H 0.06 1.98 7.10 -2.39 -0.02 1.96 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.11 1.10 5.93 -2.39 -0.01 1.09 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.12 1.99 7.72 -2.39 -0.02 1.98 16 43 H 0.12 2.01 7.91 -2.39 -0.02 1.99 16 44 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 45 H 0.04 1.20 8.10 -2.38 -0.02 1.18 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 49 H 0.08 0.84 7.70 -2.38 -0.02 0.83 16 50 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -86.00 407.00 0.88 -85.12 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.40 Total: 28.33 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.58 Total: 7.60 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -3.80 Total: -125.99 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -3.20 Total: -44.35 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.90 Total: 49.29 kcal Total: -86.00 0.88 -85.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714130316.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.146 kcal (2) G-P(sol) polarization free energy of solvation -86.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds