Wall clock time and date at job start Sat Apr 11 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.43391 * 2 1 4 4 C 1.54091 * 110.48922 * 122.54671 * 2 1 3 5 5 O 1.43751 * 107.29553 * 120.70730 * 4 2 1 6 6 C 1.44375 * 106.97078 * 333.48395 * 5 4 2 7 7 H 1.08995 * 110.62184 * 281.40069 * 6 5 4 8 8 C 1.53003 * 110.61595 * 158.56344 * 6 5 4 9 9 C 1.50700 * 109.47274 * 65.10530 * 8 6 5 10 10 O 1.21277 * 119.99742 * 355.00965 * 9 8 6 11 11 N 1.34775 * 120.00066 * 175.01268 * 9 8 6 12 12 C 1.46494 * 120.00070 * 184.64805 * 11 9 8 13 13 C 1.53003 * 109.54648 * 56.03135 * 12 11 9 14 14 N 1.46502 * 109.46976 * 62.23165 * 13 12 11 15 15 C 1.36938 * 119.99976 * 184.84740 * 14 13 12 16 16 H 1.07995 * 119.99865 * 4.99239 * 15 14 13 17 17 C 1.38814 * 119.99980 * 184.98725 * 15 14 13 18 18 N 1.31619 * 119.99740 * 184.87876 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 4.88581 * 17 15 14 20 20 H 1.48498 * 109.47461 * 94.70536 * 19 17 15 21 21 H 1.48501 * 109.47159 * 214.70475 * 19 17 15 22 22 H 1.48498 * 109.47320 * 334.70382 * 19 17 15 23 23 C 1.53177 * 109.54112 * 295.76420 * 12 11 9 24 24 C 1.53090 * 109.16699 * 297.11320 * 23 12 11 25 25 O 1.42910 * 109.41263 * 302.39284 * 24 23 12 26 26 C 1.42900 * 114.09704 * 61.15749 * 25 24 23 27 27 C 1.53096 * 109.41430 * 298.84060 * 26 25 24 28 28 C 1.54995 * 110.34007 * 237.30811 * 2 1 3 29 29 H 1.09002 * 109.47001 * 298.90464 * 1 2 3 30 30 H 1.08991 * 109.47234 * 58.91080 * 1 2 3 31 31 H 1.09003 * 109.46957 * 178.90730 * 1 2 3 32 32 H 1.08999 * 109.47073 * 181.09736 * 3 2 1 33 33 H 1.09005 * 109.46761 * 301.09139 * 3 2 1 34 34 H 1.08996 * 109.47055 * 61.09501 * 3 2 1 35 35 H 1.08996 * 109.88252 * 1.28180 * 4 2 1 36 36 H 1.09001 * 110.00413 * 240.19846 * 4 2 1 37 37 H 1.09001 * 109.46823 * 305.10357 * 8 6 5 38 38 H 1.09000 * 109.47352 * 185.10885 * 8 6 5 39 39 H 0.96998 * 119.99795 * 4.64395 * 11 9 8 40 40 H 1.08996 * 109.47080 * 182.23405 * 13 12 11 41 41 H 1.08998 * 109.46656 * 302.23114 * 13 12 11 42 42 H 0.97003 * 120.00126 * 4.84243 * 14 13 12 43 43 H 0.96993 * 119.99449 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.52254 * 57.02214 * 23 12 11 45 45 H 1.09000 * 109.52219 * 177.20965 * 23 12 11 46 46 H 1.09002 * 109.48509 * 182.41014 * 24 23 12 47 47 H 1.08996 * 109.48828 * 62.37636 * 24 23 12 48 48 H 1.09004 * 109.48300 * 178.85945 * 26 25 24 49 49 H 1.08994 * 109.49405 * 58.82790 * 26 25 24 50 50 H 1.09002 * 109.51877 * 297.70127 * 27 26 25 51 51 H 1.09005 * 109.52003 * 177.52095 * 27 26 25 52 52 H 1.08997 * 110.83959 * 143.89568 * 28 2 1 53 53 H 1.09005 * 111.04861 * 20.23760 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0694 -0.7765 1.2167 5 8 2.8756 -1.8547 0.7125 6 6 2.3781 -2.1723 -0.6051 7 1 1.4715 -2.7736 -0.5385 8 6 3.4465 -2.9004 -1.4232 9 6 3.7386 -4.2372 -0.7917 10 8 3.2181 -4.5366 0.2620 11 7 4.5782 -5.0998 -1.3978 12 6 4.7835 -6.4378 -0.8378 13 6 3.4359 -7.1506 -0.7079 14 7 2.8392 -7.3129 -2.0360 15 6 1.5807 -7.8378 -2.1618 16 1 0.9966 -8.0571 -1.2803 17 6 1.0558 -8.0880 -3.4223 18 7 -0.1874 -8.5016 -3.5471 19 14 2.1140 -7.8378 -4.9411 20 1 2.7388 -9.1284 -5.3273 21 1 1.2687 -7.3436 -6.0575 22 1 3.1759 -6.8425 -4.6462 23 6 5.4385 -6.3209 0.5419 24 6 6.8190 -5.6768 0.3899 25 8 7.6125 -6.4595 -0.5046 26 6 7.0730 -6.5642 -1.8237 27 6 5.7026 -7.2440 -1.7606 28 6 2.0688 -0.7850 -1.2231 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5306 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 3.1539 1.4155 -0.0197 33 1 1.6937 1.9594 -0.8801 34 1 1.7256 1.9476 0.8996 35 1 1.2393 -1.1757 1.7995 36 1 2.6768 -0.1194 1.8391 37 1 4.3575 -2.3022 -1.4454 38 1 3.0856 -3.0504 -2.4407 39 1 5.0465 -4.8346 -2.2048 40 1 3.5854 -8.1305 -0.2546 41 1 2.7704 -6.5578 -0.0805 42 1 3.3356 -7.0484 -2.8264 43 1 -0.5543 -8.6760 -4.4279 44 1 4.8170 -5.7020 1.1889 45 1 5.5459 -7.3135 0.9794 46 1 7.3076 -5.6301 1.3632 47 1 6.7080 -4.6689 -0.0099 48 1 7.7444 -7.1569 -2.4451 49 1 6.9651 -5.5681 -2.2527 50 1 5.8154 -8.2552 -1.3696 51 1 5.2701 -7.2852 -2.7603 52 1 2.9753 -0.3217 -1.6125 53 1 1.3099 -0.8663 -2.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717265968.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:17 Heat of formation + Delta-G solvation = -145.609997 kcal Electronic energy + Delta-G solvation = -32299.922312 eV Core-core repulsion = 28170.645930 eV Total energy + Delta-G solvation = -4129.276382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82562 -40.85393 -39.37964 -37.34790 -35.57979 -35.42530 -33.78437 -33.10295 -32.20416 -32.07108 -28.66805 -28.27568 -28.11365 -26.75328 -25.20329 -24.65835 -23.23970 -22.85075 -21.51536 -20.45318 -20.28214 -19.75557 -18.33869 -17.44613 -17.18949 -16.98712 -16.79421 -16.55409 -16.32894 -16.18757 -15.87090 -15.48586 -15.27115 -15.09714 -14.87202 -14.59375 -14.43471 -14.37906 -14.23736 -13.89855 -13.80685 -13.54114 -13.44621 -13.20969 -12.90194 -12.84754 -12.79098 -12.65873 -12.46540 -12.33378 -12.26949 -12.10821 -11.86854 -11.70823 -11.64987 -11.59716 -11.49510 -11.37806 -11.05846 -10.65868 -10.52945 -10.41019 -9.88197 -9.27922 -8.03986 -5.37963 1.30748 1.41324 1.47521 1.81517 2.23861 2.46679 2.93961 2.95395 3.26182 3.44149 3.44922 3.64295 3.72356 3.82011 3.86756 3.89893 3.95941 4.01860 4.09919 4.18008 4.25272 4.35543 4.39408 4.43215 4.58051 4.60116 4.68179 4.71539 4.75553 4.77714 4.78798 4.79903 4.82368 4.84544 4.88498 5.01185 5.03032 5.07060 5.09905 5.11799 5.12473 5.18385 5.20876 5.28838 5.42998 5.65737 5.73674 6.02181 6.18391 6.24421 6.68823 7.06069 7.44665 7.78624 8.05585 9.18360 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.004232 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.402954 B = 6614.709841 C = 8845.144214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.130 4.130 4 C 0.046 3.954 5 O -0.383 6.383 6 C 0.091 3.909 7 H 0.038 0.962 8 C -0.131 4.131 9 C 0.512 3.488 10 O -0.559 6.559 11 N -0.713 5.713 12 C 0.181 3.819 13 C 0.146 3.854 14 N -0.742 5.742 15 C -0.237 4.237 16 H 0.038 0.962 17 C -0.065 4.065 18 N -0.986 5.986 19 Si 0.966 3.034 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.240 1.240 23 C -0.157 4.157 24 C 0.075 3.925 25 O -0.393 6.393 26 C 0.064 3.936 27 C -0.154 4.154 28 C -0.134 4.134 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.409 0.591 40 H 0.017 0.983 41 H 0.026 0.974 42 H 0.370 0.630 43 H 0.258 0.742 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.056 0.944 48 H 0.116 0.884 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.099 0.901 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.058 20.690 2.317 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 C -0.187 4.187 4 C -0.031 4.031 5 O -0.303 6.303 6 C 0.033 3.967 7 H 0.056 0.944 8 C -0.170 4.170 9 C 0.300 3.700 10 O -0.437 6.437 11 N -0.367 5.367 12 C 0.094 3.906 13 C 0.019 3.981 14 N -0.389 5.389 15 C -0.368 4.368 16 H 0.056 0.944 17 C -0.256 4.256 18 N -0.637 5.637 19 Si 0.792 3.208 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.165 1.165 23 C -0.196 4.196 24 C -0.002 4.002 25 O -0.312 6.312 26 C -0.012 4.012 27 C -0.192 4.192 28 C -0.171 4.171 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.246 0.754 40 H 0.035 0.965 41 H 0.045 0.955 42 H 0.205 0.795 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.074 0.926 48 H 0.134 0.866 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.097 0.903 52 H 0.117 0.883 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.834 20.192 3.322 25.274 hybrid contribution -0.944 -0.411 -1.005 1.438 sum 13.891 19.781 2.317 24.281 Atomic orbital electron populations 1.21896 0.93467 1.01359 1.03038 1.21967 0.96501 0.97214 0.94040 1.21794 1.01089 0.92939 1.02886 1.23445 0.94803 0.88442 0.96364 1.88945 1.56150 1.53243 1.31924 1.22752 0.95066 0.95873 0.82988 0.94401 1.21828 1.01969 0.92650 1.00568 1.20987 0.77710 0.86694 0.84657 1.90666 1.51244 1.77758 1.24019 1.45915 1.46950 1.13402 1.30434 1.20358 0.93481 0.82462 0.94319 1.21066 0.93495 0.96351 0.87183 1.42484 1.15901 1.76852 1.03636 1.18939 0.91623 1.33337 0.92881 0.94418 1.25615 0.97638 1.01516 1.00825 1.69931 1.15876 1.54328 1.23539 0.85266 0.78510 0.78685 0.78383 1.20582 1.22044 1.16458 1.22447 0.97858 1.02737 0.96529 1.22478 0.89623 0.93487 0.94566 1.87909 1.48287 1.72982 1.21982 1.22716 0.93379 1.00820 0.84300 1.22438 0.96159 1.00371 1.00219 1.23341 1.03001 0.93125 0.97663 0.91528 0.90934 0.94247 0.91977 0.91223 0.91704 0.93917 0.88780 0.85334 0.85961 0.75403 0.96546 0.95547 0.79493 0.93285 0.90805 0.90791 0.87781 0.92577 0.86576 0.91384 0.89957 0.90251 0.88265 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.25 71.98 0.59 -1.79 16 2 C -0.10 -1.66 0.99 -51.13 -0.05 -1.71 16 3 C -0.13 -1.56 8.28 71.98 0.60 -0.97 16 4 C 0.05 1.04 7.03 72.35 0.51 1.55 16 5 O -0.38 -11.27 10.42 -134.44 -1.40 -12.67 16 6 C 0.09 2.38 2.82 31.28 0.09 2.47 16 7 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 8 C -0.13 -2.96 5.49 29.85 0.16 -2.80 16 9 C 0.51 15.97 7.15 87.66 0.63 16.60 16 10 O -0.56 -22.85 11.69 11.52 0.13 -22.71 16 11 N -0.71 -19.12 4.11 -422.40 -1.74 -20.85 16 12 C 0.18 5.54 0.33 3.72 0.00 5.54 16 13 C 0.15 6.26 4.97 86.38 0.43 6.69 16 14 N -0.74 -35.44 5.03 -343.45 -1.73 -37.16 16 15 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16 16 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 17 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 18 N -0.99 -64.50 13.97 21.65 0.30 -64.20 16 19 Si 0.97 44.34 28.02 68.60 1.92 46.26 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.24 -9.26 6.14 99.48 0.61 -8.65 16 23 C -0.16 -4.51 4.82 30.68 0.15 -4.36 16 24 C 0.08 1.71 6.68 72.01 0.48 2.19 16 25 O -0.39 -9.11 10.77 -148.98 -1.60 -10.71 16 26 C 0.06 1.24 6.67 72.01 0.48 1.72 16 27 C -0.15 -3.95 4.73 30.68 0.15 -3.80 16 28 C -0.13 -2.38 5.71 31.96 0.18 -2.19 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.04 1.05 7.69 -2.39 -0.02 1.03 16 36 H 0.09 1.78 7.70 -2.39 -0.02 1.76 16 37 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 39 H 0.41 8.03 7.41 -92.71 -0.69 7.35 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.03 1.32 5.99 -2.39 -0.01 1.31 16 42 H 0.37 15.93 3.97 -92.71 -0.37 15.56 16 43 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.07 2.50 6.27 -2.39 -0.01 2.48 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 1.20 7.75 -2.39 -0.02 1.18 16 48 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 49 H 0.07 1.04 7.01 -2.39 -0.02 1.02 16 50 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 51 H 0.08 2.09 6.76 -2.38 -0.02 2.07 16 52 H 0.10 1.36 7.79 -2.39 -0.02 1.34 16 53 H 0.09 1.47 7.87 -2.38 -0.02 1.45 16 Total: -1.00 -80.78 400.77 1.38 -79.40 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -0.25 Total: 40.19 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 5.74 Total: 2.46 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -3.16 Total: -122.21 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -2.87 Total: -46.10 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.92 Total: 46.26 kcal Total: -80.78 1.38 -79.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717265968.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.213 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds