Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99574 * 2 1 4 4 H 1.48497 * 109.47235 * 270.00082 * 3 2 1 5 5 H 1.48506 * 109.47020 * 30.00182 * 3 2 1 6 6 H 1.48504 * 109.46808 * 150.00056 * 3 2 1 7 7 C 1.38803 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00316 * 226.80856 * 7 2 1 9 9 N 1.36946 * 119.99953 * 46.81034 * 7 2 1 10 10 C 1.46497 * 119.99628 * 195.28755 * 9 7 2 11 11 C 1.52999 * 109.46994 * 269.99470 * 10 9 7 12 12 N 1.46504 * 109.47089 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00191 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99532 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00034 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.53064 * 305.12965 * 15 13 12 17 17 C 1.53143 * 109.52509 * 65.33274 * 15 13 12 18 18 O 1.43079 * 109.15061 * 175.21195 * 17 15 13 19 19 C 1.43077 * 113.59259 * 302.04375 * 18 17 15 20 20 C 1.53143 * 109.14832 * 57.95498 * 19 18 17 21 21 O 1.43074 * 109.15391 * 304.68451 * 20 19 18 22 22 C 1.46501 * 119.99686 * 15.28486 * 9 7 2 23 23 C 1.54242 * 108.89496 * 249.44599 * 22 9 7 24 24 C 1.50468 * 108.52686 * 159.26928 * 23 22 9 25 25 C 1.54059 * 112.50310 * 94.14807 * 24 23 22 26 26 C 1.54075 * 112.81707 * 318.28746 * 25 24 23 27 27 C 1.50472 * 112.49396 * 318.28441 * 26 25 24 28 28 C 1.45548 * 108.89147 * 126.56560 * 22 9 7 29 29 H 0.96995 * 120.00506 * 355.78647 * 1 2 3 30 30 H 1.09008 * 109.46755 * 150.00154 * 10 9 7 31 31 H 1.08995 * 109.47822 * 29.99725 * 10 9 7 32 32 H 1.08997 * 109.47680 * 300.00330 * 11 10 9 33 33 H 1.09001 * 109.47184 * 60.00760 * 11 10 9 34 34 H 0.96994 * 119.99867 * 0.02562 * 12 11 10 35 35 H 1.09000 * 109.51978 * 295.11847 * 17 15 13 36 36 H 1.09000 * 109.52726 * 55.30873 * 17 15 13 37 37 H 1.08992 * 109.52561 * 298.05461 * 19 18 17 38 38 H 1.08992 * 109.52105 * 177.85421 * 19 18 17 39 39 H 1.09002 * 109.52506 * 184.78450 * 20 19 18 40 40 H 1.09000 * 109.52726 * 64.58877 * 20 19 18 41 41 H 1.08996 * 108.87327 * 7.95634 * 22 9 7 42 42 H 1.09005 * 109.62728 * 278.97681 * 23 22 9 43 43 H 1.09001 * 109.62464 * 39.55278 * 23 22 9 44 44 H 1.09003 * 108.87118 * 333.36816 * 24 23 22 45 45 H 1.09000 * 108.80056 * 214.87946 * 24 23 22 46 46 H 1.09002 * 108.81707 * 197.42364 * 25 24 23 47 47 H 1.08998 * 108.81477 * 79.14295 * 25 24 23 48 48 H 1.08997 * 108.87566 * 197.50481 * 26 25 24 49 49 H 1.08997 * 108.79773 * 79.00634 * 26 25 24 50 50 H 1.09008 * 109.62762 * 334.44090 * 27 26 25 51 51 H 1.08996 * 109.78954 * 213.95971 * 27 26 25 52 52 H 1.08997 * 108.89165 * 303.43704 * 28 22 9 53 53 H 1.08994 * 108.89425 * 61.93244 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 2.8347 -1.3499 0.6813 9 7 1.6498 -2.2005 -0.8657 10 6 2.1385 -3.5652 -0.6536 11 6 3.4645 -3.7527 -1.3935 12 7 3.9529 -5.1177 -1.1820 13 6 5.1127 -5.5130 -1.7433 14 8 5.7523 -4.7385 -2.4232 15 6 5.6154 -6.9168 -1.5252 16 1 5.6810 -7.1184 -0.4561 17 6 4.6516 -7.9126 -2.1771 18 8 5.1922 -9.2324 -2.0629 19 6 6.4862 -9.3745 -2.6565 20 6 7.4500 -8.3787 -2.0047 21 8 6.9095 -7.0589 -2.1188 22 6 0.7754 -1.9038 -2.0031 23 6 -0.5969 -2.5663 -1.7643 24 6 -1.6189 -1.8719 -2.6230 25 6 -1.8326 -2.5799 -3.9745 26 6 -0.5146 -3.0573 -4.6138 27 6 0.5890 -2.0427 -4.4839 28 6 1.4138 -2.3745 -3.2235 29 1 -0.4850 0.8377 0.0617 30 1 1.4059 -4.2767 -1.0349 31 1 2.2899 -3.7355 0.4122 32 1 3.3132 -3.5825 -2.4594 33 1 4.1971 -3.0413 -1.0123 34 1 3.4413 -5.7371 -0.6385 35 1 3.6865 -7.8691 -1.6722 36 1 4.5246 -7.6608 -3.2299 37 1 6.4209 -9.1718 -3.7254 38 1 6.8498 -10.3898 -2.4987 39 1 8.4151 -8.4220 -2.5095 40 1 7.5770 -8.6305 -0.9518 41 1 0.6379 -0.8246 -2.0701 42 1 -0.5465 -3.6209 -2.0356 43 1 -0.8730 -2.4682 -0.7144 44 1 -1.2878 -0.8501 -2.8085 45 1 -2.5672 -1.8428 -2.0863 46 1 -2.3255 -1.8895 -4.6590 47 1 -2.4813 -3.4422 -3.8209 48 1 -0.6876 -3.2568 -5.6713 49 1 -0.2029 -3.9816 -4.1274 50 1 0.1599 -1.0452 -4.3887 51 1 1.2320 -2.0822 -5.3631 52 1 2.3951 -1.9082 -3.3110 53 1 1.5427 -3.4549 -3.1604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723639710.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -124.242167 kcal Electronic energy + Delta-G solvation = -31651.203822 eV Core-core repulsion = 27522.854019 eV Total energy + Delta-G solvation = -4128.349803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.54226 -40.35585 -39.83260 -37.26113 -36.96252 -35.70140 -33.74330 -32.91002 -32.75861 -31.66931 -29.86452 -28.66116 -26.32242 -25.86776 -25.52574 -24.49930 -22.99587 -22.56446 -21.66345 -20.80092 -19.94610 -18.96771 -18.61537 -18.09170 -17.61852 -17.00885 -16.84547 -16.59488 -16.33296 -16.31120 -16.16869 -15.70586 -15.56898 -15.37426 -14.98290 -14.82545 -14.50664 -14.26209 -14.10234 -13.95536 -13.68820 -13.59679 -13.26867 -13.03258 -12.83869 -12.81212 -12.76680 -12.63402 -12.44621 -12.23542 -11.93597 -11.92925 -11.66588 -11.55847 -11.45159 -11.24920 -11.11072 -10.98271 -10.88433 -10.85621 -10.30795 -10.21607 -10.06120 -8.89435 -8.02458 -5.01994 1.39518 1.44636 1.49834 1.53966 1.73629 2.51485 2.64299 2.90417 3.06288 3.42344 3.55346 3.72562 3.84146 3.92700 3.96879 4.10249 4.13725 4.18197 4.24596 4.27648 4.34513 4.45751 4.48406 4.49099 4.54579 4.55575 4.65197 4.74071 4.78201 4.78677 4.80816 4.98917 5.02966 5.06682 5.14406 5.18804 5.24365 5.30721 5.38684 5.42380 5.47141 5.52222 5.57852 5.67566 5.78053 5.84680 5.86146 5.88277 6.06755 6.31033 6.51212 7.14273 7.17753 7.93982 8.38171 9.02601 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003078 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.081546 B = 9095.615454 C =10590.429293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C -0.001 4.001 3 Si 0.893 3.107 4 H -0.296 1.296 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.293 4.293 8 H 0.060 0.940 9 N -0.596 5.596 10 C 0.147 3.853 11 C 0.108 3.892 12 N -0.702 5.702 13 C 0.515 3.485 14 O -0.574 6.574 15 C 0.044 3.956 16 H 0.117 0.883 17 C 0.043 3.957 18 O -0.382 6.382 19 C 0.018 3.982 20 C 0.017 3.983 21 O -0.387 6.387 22 C 0.194 3.806 23 C -0.096 4.096 24 C -0.102 4.102 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.112 4.112 28 C -0.119 4.119 29 H 0.252 0.748 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.417 0.583 35 H 0.138 0.862 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.048 0.952 51 H 0.069 0.931 52 H 0.032 0.968 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -20.073 -6.444 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.202 4.202 3 Si 0.722 3.278 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.421 4.421 8 H 0.078 0.922 9 N -0.317 5.317 10 C 0.020 3.980 11 C -0.018 4.018 12 N -0.356 5.356 13 C 0.300 3.700 14 O -0.453 6.453 15 C -0.017 4.017 16 H 0.134 0.866 17 C -0.035 4.035 18 O -0.300 6.300 19 C -0.059 4.059 20 C -0.059 4.059 21 O -0.306 6.306 22 C 0.088 3.912 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.158 4.158 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.255 0.745 35 H 0.156 0.844 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.087 0.913 52 H 0.051 0.949 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.131 -19.392 -6.931 21.004 hybrid contribution 0.533 1.576 0.599 1.768 sum 4.664 -17.816 -6.332 19.475 Atomic orbital electron populations 1.70484 1.06353 1.26128 1.47422 1.24844 0.94635 0.99759 1.00998 0.86377 0.80379 0.83772 0.77262 1.22367 1.22352 1.20481 1.19003 1.11415 0.93103 1.18583 0.92235 1.44264 1.55978 1.04343 1.27083 1.20828 0.92212 0.86985 0.97967 1.22222 0.97430 0.81269 1.00907 1.45764 1.22648 1.14868 1.52365 1.20531 0.81000 0.89164 0.79267 1.90718 1.57754 1.56296 1.40487 1.22622 0.86471 0.92175 1.00477 0.86603 1.23175 0.97079 0.81827 1.01374 1.88111 1.33759 1.28341 1.79817 1.23500 0.82907 1.02060 0.97392 1.23616 0.98449 0.81206 1.02599 1.88204 1.31250 1.31593 1.79596 1.19147 0.88868 0.98083 0.85122 1.21421 0.95567 0.98022 0.98550 1.21105 0.98254 0.98831 0.95846 1.21901 0.97382 1.00141 0.95259 1.21270 0.94238 0.98327 1.00825 1.21263 0.97457 0.99513 0.96786 1.21061 0.98338 1.00865 0.95520 0.93876 0.91544 0.92946 0.92241 0.94840 0.74540 0.84446 0.92273 0.92073 0.84607 0.85636 0.90647 0.94092 0.92682 0.94256 0.94818 0.93643 0.92101 0.91299 0.90789 0.92024 0.93284 0.91279 0.94877 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.52 12.11 21.65 0.26 -47.25 16 2 C 0.00 -0.05 4.06 84.86 0.34 0.30 16 3 Si 0.89 43.99 29.69 68.60 2.04 46.03 16 4 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.29 -15.49 9.49 84.03 0.80 -14.69 16 8 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 9 N -0.60 -27.02 2.38 -688.46 -1.64 -28.66 16 10 C 0.15 5.26 5.01 86.38 0.43 5.69 16 11 C 0.11 3.73 5.68 86.38 0.49 4.22 16 12 N -0.70 -18.17 5.52 -463.05 -2.56 -20.73 16 13 C 0.51 15.25 7.18 87.65 0.63 15.88 16 14 O -0.57 -23.55 16.51 15.88 0.26 -23.28 16 15 C 0.04 0.95 3.26 29.89 0.10 1.05 16 16 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 17 C 0.04 0.73 6.29 72.03 0.45 1.18 16 18 O -0.38 -6.46 10.85 -136.01 -1.48 -7.94 16 19 C 0.02 0.23 7.05 72.03 0.51 0.74 16 20 C 0.02 0.26 7.05 72.03 0.51 0.77 16 21 O -0.39 -9.78 10.03 -122.90 -1.23 -11.01 16 22 C 0.19 8.20 1.33 43.14 0.06 8.26 16 23 C -0.10 -3.70 4.46 30.20 0.13 -3.57 16 24 C -0.10 -3.54 5.31 30.13 0.16 -3.38 16 25 C -0.11 -2.86 5.85 31.32 0.18 -2.68 16 26 C -0.11 -2.74 5.32 30.14 0.16 -2.58 16 27 C -0.11 -3.38 5.61 30.19 0.17 -3.21 16 28 C -0.12 -4.31 3.26 28.74 0.09 -4.21 16 29 H 0.25 13.60 8.32 -92.71 -0.77 12.83 16 30 H 0.07 2.05 7.25 -2.38 -0.02 2.03 16 31 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 32 H 0.06 2.20 5.40 -2.39 -0.01 2.18 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.42 7.33 8.41 -92.71 -0.78 6.55 16 35 H 0.14 1.56 8.07 -2.39 -0.02 1.55 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.04 2.09 5.35 -2.39 -0.01 2.07 16 42 H 0.05 1.85 6.68 -2.38 -0.02 1.83 16 43 H 0.04 1.80 7.98 -2.39 -0.02 1.79 16 44 H 0.03 1.32 6.63 -2.39 -0.02 1.31 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 49 H 0.06 1.52 6.63 -2.39 -0.02 1.50 16 50 H 0.05 1.62 6.98 -2.38 -0.02 1.61 16 51 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.03 1.33 7.68 -2.39 -0.02 1.31 16 53 H 0.06 2.13 5.61 -2.39 -0.01 2.11 16 Total: -1.00 -71.06 399.39 0.99 -70.07 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.12 Total: 19.02 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.22 Total: 3.75 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -3.93 Total: -96.64 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -2.45 Total: -42.23 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.04 Total: 46.03 kcal Total: -71.06 0.99 -70.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723639710.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.174 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds