Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.88862 * 2 1 4 4 C 1.54908 * 111.00267 * 123.87876 * 2 1 3 5 5 N 1.47422 * 104.83282 * 155.08543 * 4 2 1 6 6 C 1.36935 * 125.65101 * 155.90986 * 5 4 2 7 7 H 1.08005 * 119.99825 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00221 * 179.97438 * 6 5 4 9 9 N 1.31613 * 119.99796 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99823 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47303 * 60.00491 * 10 8 6 12 12 H 1.48498 * 109.46808 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47293 * 299.99798 * 10 8 6 14 14 C 1.47019 * 108.69990 * 335.86849 * 5 4 2 15 15 C 1.54367 * 107.29057 * 1.09483 * 14 5 4 16 16 H 1.09007 * 110.75718 * 140.50452 * 15 14 5 17 17 N 1.46495 * 110.70510 * 263.79264 * 15 14 5 18 18 C 1.34783 * 120.00049 * 268.48490 * 17 15 14 19 19 O 1.21282 * 120.00004 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00172 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.47122 * 179.97438 * 20 18 17 22 22 O 1.42901 * 109.46975 * 179.97438 * 21 20 18 23 23 C 1.42900 * 114.00039 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.47340 * 180.02562 * 23 22 21 25 25 H 1.09003 * 110.33393 * 307.25521 * 24 23 22 26 26 C 1.54475 * 110.37382 * 185.00304 * 24 23 22 27 27 C 1.54511 * 104.06458 * 217.18927 * 26 24 23 28 28 C 1.54479 * 104.06097 * 0.02562 * 27 26 24 29 29 O 1.44425 * 110.36782 * 69.62378 * 24 23 22 30 30 H 1.09001 * 109.47002 * 60.70044 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.70481 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.70310 * 1 2 3 33 33 H 1.09002 * 109.47307 * 59.29349 * 3 2 1 34 34 H 1.08998 * 109.47512 * 179.29627 * 3 2 1 35 35 H 1.09004 * 109.46834 * 299.30169 * 3 2 1 36 36 H 1.08998 * 110.36691 * 273.92562 * 4 2 1 37 37 H 1.09006 * 110.36433 * 36.13467 * 4 2 1 38 38 H 0.96996 * 120.00324 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.88245 * 120.48338 * 14 5 4 40 40 H 1.09005 * 109.88433 * 241.48937 * 14 5 4 41 41 H 0.96998 * 120.00572 * 88.49141 * 17 15 14 42 42 H 1.09002 * 109.47220 * 300.00453 * 20 18 17 43 43 H 1.09006 * 109.46714 * 60.00346 * 20 18 17 44 44 H 1.08993 * 109.47286 * 300.00269 * 21 20 18 45 45 H 1.09006 * 109.46972 * 60.00591 * 21 20 18 46 46 H 1.08996 * 109.47500 * 300.00769 * 23 22 21 47 47 H 1.09004 * 109.46759 * 60.00545 * 23 22 21 48 48 H 1.08998 * 110.51109 * 335.83692 * 26 24 23 49 49 H 1.09000 * 110.51459 * 98.40792 * 26 24 23 50 50 H 1.09008 * 110.50713 * 118.64263 * 27 26 24 51 51 H 1.08995 * 110.51251 * 241.21790 * 27 26 24 52 52 H 1.09003 * 110.37654 * 142.80882 * 28 27 26 53 53 H 1.09002 * 110.36812 * 265.03416 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8061 1.2006 5 7 3.4271 -1.2427 0.7739 6 6 4.4640 -1.5661 1.6079 7 1 4.3332 -1.5107 2.6785 8 6 5.6831 -1.9650 1.0772 9 7 5.8425 -2.0320 -0.2275 10 14 7.0977 -2.4054 2.2150 11 1 6.6975 -3.5393 3.0864 12 1 8.2803 -2.7955 1.4061 13 1 7.4399 -1.2309 3.0568 14 6 3.4674 -1.2744 -0.6954 15 6 2.0862 -0.8075 -1.2024 16 1 2.1922 -0.1692 -2.0797 17 7 1.2269 -1.9569 -1.4968 18 6 1.2061 -2.4825 -2.7377 19 8 1.8992 -2.0043 -3.6105 20 6 0.3226 -3.6652 -3.0404 21 6 0.4858 -4.0611 -4.5092 22 8 -0.3516 -5.1829 -4.7961 23 6 -0.2745 -5.6348 -6.1496 24 6 -1.2074 -6.8322 -6.3415 25 1 -1.0017 -7.5965 -5.5920 26 6 -1.0477 -7.4160 -7.7627 27 6 -2.4814 -7.8324 -8.1608 28 6 -3.3377 -7.4504 -6.9332 29 8 -2.5870 -6.4114 -6.2682 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3633 -1.0275 0.0126 32 1 -0.3633 0.5247 0.8836 33 1 1.7149 1.9560 0.8836 34 1 3.1652 1.4026 0.0126 35 1 1.7352 1.9482 -0.8962 36 1 2.1559 -0.1712 2.0837 37 1 1.4507 -1.6687 1.4043 38 1 6.6945 -2.3104 -0.5984 39 1 4.2426 -0.6003 -1.0596 40 1 3.6677 -2.2893 -1.0390 41 1 0.6727 -2.3396 -0.7987 42 1 0.6067 -4.5034 -2.4041 43 1 -0.7173 -3.4002 -2.8493 44 1 0.2013 -3.2228 -5.1452 45 1 1.5257 -4.3260 -4.7008 46 1 -0.5754 -4.8292 -6.8193 47 1 0.7497 -5.9318 -6.3756 48 1 -0.6665 -6.6576 -8.4465 49 1 -0.3864 -8.2823 -7.7478 50 1 -2.8090 -7.2798 -9.0415 51 1 -2.5302 -8.9057 -8.3446 52 1 -4.3096 -7.0727 -7.2511 53 1 -3.4624 -8.3104 -6.2752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725291796.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -134.162736 kcal Electronic energy + Delta-G solvation = -30237.012238 eV Core-core repulsion = 26108.232247 eV Total energy + Delta-G solvation = -4128.779991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28533 -40.47932 -39.60036 -38.51729 -35.68530 -34.49601 -33.30644 -32.88643 -32.59806 -31.14856 -29.66821 -28.05751 -27.40952 -26.41070 -25.42709 -24.21858 -22.92628 -22.19920 -21.88790 -21.26956 -20.08209 -18.68575 -18.50451 -17.73805 -17.41991 -17.25835 -16.90328 -16.62680 -16.59978 -16.38145 -15.70204 -15.53313 -15.44732 -14.94667 -14.87546 -14.67668 -14.55650 -14.12323 -13.76745 -13.74120 -13.44224 -13.15856 -13.13431 -12.95983 -12.81411 -12.68421 -12.64564 -12.57456 -12.46726 -12.22952 -12.20104 -12.16661 -12.08502 -11.84685 -11.72844 -11.51909 -11.49273 -11.30271 -10.94496 -10.74205 -10.70936 -10.66797 -9.96336 -8.88330 -7.83038 -5.19502 1.43799 1.47343 1.53673 1.64761 2.00522 2.49338 2.77297 2.93124 3.34915 3.51434 3.65760 3.71998 3.77368 3.83566 3.97227 3.98574 4.03928 4.09232 4.12582 4.17015 4.34229 4.40857 4.41777 4.49996 4.51085 4.53992 4.55015 4.72734 4.76369 4.82088 4.83692 4.86636 4.89798 4.90566 4.95995 4.97235 5.07151 5.09005 5.15311 5.16298 5.18465 5.32839 5.36948 5.46495 5.57675 5.72780 5.76946 5.89727 6.13323 6.18474 6.59775 7.08869 7.29211 7.78769 8.43076 9.26005 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.002104 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.860907 B =13306.562510 C =14605.497990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.236 4.236 7 H 0.087 0.913 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.978 3.022 11 H -0.275 1.275 12 H -0.300 1.300 13 H -0.276 1.276 14 C 0.192 3.808 15 C 0.136 3.864 16 H 0.078 0.922 17 N -0.698 5.698 18 C 0.514 3.486 19 O -0.589 6.589 20 C -0.127 4.127 21 C 0.084 3.916 22 O -0.397 6.397 23 C 0.062 3.938 24 C 0.073 3.927 25 H 0.075 0.925 26 C -0.147 4.147 27 C -0.150 4.150 28 C 0.033 3.967 29 O -0.395 6.395 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.243 0.757 39 H 0.004 0.996 40 H 0.001 0.999 41 H 0.411 0.589 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.100 0.900 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.782 -7.858 -11.671 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.105 0.895 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.806 3.194 11 H -0.201 1.201 12 H -0.226 1.226 13 H -0.201 1.201 14 C 0.066 3.934 15 C 0.030 3.970 16 H 0.096 0.904 17 N -0.350 5.350 18 C 0.302 3.698 19 O -0.469 6.469 20 C -0.166 4.166 21 C 0.007 3.993 22 O -0.316 6.316 23 C -0.014 4.014 24 C 0.016 3.984 25 H 0.093 0.907 26 C -0.184 4.184 27 C -0.188 4.188 28 C -0.043 4.043 29 O -0.315 6.315 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.022 0.978 40 H 0.019 0.981 41 H 0.249 0.751 42 H 0.130 0.870 43 H 0.146 0.854 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.115 0.885 50 H 0.100 0.900 51 H 0.114 0.886 52 H 0.118 0.882 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.295 -7.476 -12.037 24.752 hybrid contribution 1.634 -0.484 0.426 1.757 sum -18.661 -7.960 -11.612 23.376 Atomic orbital electron populations 1.21644 0.90779 1.02658 1.02990 1.21991 0.97316 0.95201 0.93169 1.21589 0.99891 0.94015 1.02617 1.21892 0.85469 0.95521 0.95787 1.44675 1.09298 1.78891 1.01767 1.19439 0.90258 1.37028 0.89772 0.89549 1.25686 1.00654 1.02757 0.97306 1.70224 1.24136 1.54894 1.11092 0.85155 0.78382 0.78317 0.77512 1.20116 1.22639 1.20145 1.21107 0.91992 0.96651 0.83647 1.22074 0.90148 0.87214 0.97570 0.90380 1.45818 1.44831 1.32745 1.11575 1.20920 0.82258 0.84612 0.82039 1.90686 1.45054 1.63686 1.47513 1.21391 1.01751 0.96085 0.97385 1.21998 0.93631 0.88327 0.95364 1.87811 1.66101 1.48741 1.28979 1.22744 0.99092 0.96351 0.83245 1.23102 0.82156 0.95053 0.98107 0.90685 1.22944 0.98699 1.02223 0.94573 1.22943 0.93799 1.03342 0.98699 1.23623 0.96452 0.91057 0.93194 1.89192 1.18088 1.45129 1.79123 0.91731 0.91643 0.90493 0.90487 0.95238 0.91543 0.93468 0.94974 0.94770 0.97794 0.98059 0.75106 0.87041 0.85432 0.92830 0.93680 0.92432 0.90487 0.90013 0.88493 0.90006 0.88598 0.88172 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.27 71.98 0.60 -2.09 16 2 C -0.08 -2.37 0.83 -50.79 -0.04 -2.41 16 3 C -0.12 -3.80 8.59 71.98 0.62 -3.19 16 4 C 0.14 5.24 6.12 86.86 0.53 5.77 16 5 N -0.62 -31.51 3.38 -691.90 -2.34 -33.85 16 6 C -0.24 -13.24 10.28 84.03 0.86 -12.37 16 7 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 8 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 9 N -0.95 -60.15 10.31 21.65 0.22 -59.93 16 10 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 C 0.19 9.96 4.76 86.74 0.41 10.37 16 15 C 0.14 5.25 2.60 46.19 0.12 5.37 16 16 H 0.08 3.21 7.46 -2.38 -0.02 3.19 16 17 N -0.70 -22.49 4.44 -436.85 -1.94 -24.43 16 18 C 0.51 17.25 7.83 87.66 0.69 17.94 16 19 O -0.59 -25.07 15.63 -3.04 -0.05 -25.12 16 20 C -0.13 -3.15 6.07 29.85 0.18 -2.97 16 21 C 0.08 2.23 5.23 71.98 0.38 2.61 16 22 O -0.40 -10.22 10.34 -148.94 -1.54 -11.76 16 23 C 0.06 1.27 5.54 71.98 0.40 1.67 16 24 C 0.07 1.32 3.57 31.10 0.11 1.43 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 C -0.15 -1.69 6.63 31.61 0.21 -1.48 16 27 C -0.15 -1.43 7.09 31.61 0.22 -1.21 16 28 C 0.03 0.44 7.63 72.48 0.55 1.00 16 29 O -0.40 -8.59 11.34 -148.94 -1.69 -10.28 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.27 6.39 -2.39 -0.02 1.25 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.03 1.12 7.86 -2.39 -0.02 1.11 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 37 H 0.03 1.14 8.03 -2.38 -0.02 1.12 16 38 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.00 0.24 7.38 -2.39 -0.02 0.22 16 40 H 0.00 0.07 7.40 -2.38 -0.02 0.06 16 41 H 0.41 10.78 7.08 -92.71 -0.66 10.13 16 42 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 44 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 45 H 0.04 1.31 8.10 -2.38 -0.02 1.29 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 49 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -78.36 416.70 1.22 -77.15 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.22 Total: 22.59 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.31 Total: 16.74 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -4.06 Total: -118.21 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -3.28 Total: -47.16 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -78.36 1.22 -77.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725291796.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.016 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds