Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53000 * 110.89095 * 2 1 4 4 C 1.54917 * 111.00488 * 236.07922 * 2 1 3 5 5 N 1.47420 * 104.83196 * 278.93627 * 4 2 1 6 6 C 1.36937 * 125.64893 * 155.92454 * 5 4 2 7 7 H 1.07995 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00018 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99968 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47419 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46984 * 120.00155 * 10 8 6 13 13 H 1.48492 * 109.47225 * 239.99986 * 10 8 6 14 14 C 1.47494 * 108.75867 * 335.88928 * 5 4 2 15 15 C 1.54322 * 107.03421 * 1.02584 * 14 5 4 16 16 H 1.08998 * 110.72159 * 140.69228 * 15 14 5 17 17 N 1.46496 * 110.71827 * 263.79023 * 15 14 5 18 18 C 1.34777 * 119.99875 * 271.15396 * 17 15 14 19 19 O 1.21279 * 120.00162 * 0.02562 * 18 17 15 20 20 C 1.50706 * 120.00146 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.46953 * 180.02562 * 20 18 17 22 22 O 1.42905 * 109.46728 * 180.02562 * 21 20 18 23 23 C 1.42899 * 113.99778 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.46889 * 179.97438 * 23 22 21 25 25 H 1.09008 * 110.27531 * 55.63848 * 24 23 22 26 26 C 1.54948 * 110.31037 * 177.83220 * 24 23 22 27 27 C 1.55300 * 100.94398 * 155.36014 * 26 24 23 28 28 C 1.54375 * 102.25422 * 325.86863 * 27 26 24 29 29 O 1.43242 * 107.58802 * 21.35555 * 28 27 26 30 30 H 1.09011 * 109.46964 * 296.11755 * 1 2 3 31 31 H 1.08997 * 109.47640 * 56.11581 * 1 2 3 32 32 H 1.08998 * 109.47675 * 176.11780 * 1 2 3 33 33 H 1.08997 * 109.47704 * 183.88390 * 3 2 1 34 34 H 1.09003 * 109.46950 * 303.88966 * 3 2 1 35 35 H 1.09003 * 109.46866 * 63.87873 * 3 2 1 36 36 H 1.09000 * 110.36450 * 37.77319 * 4 2 1 37 37 H 1.08999 * 110.36667 * 159.98736 * 4 2 1 38 38 H 0.97003 * 120.00041 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.03095 * 241.65974 * 14 5 4 40 40 H 1.09001 * 109.96268 * 120.34913 * 14 5 4 41 41 H 0.96999 * 120.00082 * 91.16415 * 17 15 14 42 42 H 1.09000 * 109.46974 * 60.00144 * 20 18 17 43 43 H 1.09001 * 109.46547 * 300.00234 * 20 18 17 44 44 H 1.09000 * 109.47486 * 60.00062 * 21 20 18 45 45 H 1.09001 * 109.47362 * 299.99339 * 21 20 18 46 46 H 1.08997 * 109.47171 * 299.99768 * 23 22 21 47 47 H 1.08997 * 109.47442 * 59.99964 * 23 22 21 48 48 H 1.09005 * 111.12389 * 273.28146 * 26 24 23 49 49 H 1.09003 * 111.12435 * 37.43756 * 26 24 23 50 50 H 1.08999 * 110.85010 * 207.67600 * 27 26 24 51 51 H 1.09000 * 110.84741 * 84.05719 * 27 26 24 52 52 H 1.09001 * 109.83220 * 261.84551 * 28 27 26 53 53 H 1.09000 * 109.83548 * 140.86480 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8071 -1.2001 5 7 2.0138 -2.2161 -0.7727 6 6 1.9463 -3.3005 -1.6062 7 1 1.9427 -3.1593 -2.6768 8 6 1.8834 -4.5814 -1.0749 9 7 1.8883 -4.7536 0.2300 10 14 1.7906 -6.0606 -2.2119 11 1 1.7996 -5.6010 -3.6239 12 1 2.9602 -6.9437 -1.9718 13 1 0.5389 -6.8132 -1.9438 14 6 2.0279 -2.2660 0.7014 15 6 2.0861 -0.8075 1.2025 16 1 1.4541 -0.6760 2.0807 17 7 3.4667 -0.4151 1.4962 18 6 3.9812 -0.6284 2.7235 19 8 3.3015 -1.1455 3.5846 20 6 5.4012 -0.2242 3.0259 21 6 5.7331 -0.5749 4.4777 22 8 7.0794 -0.1911 4.7646 23 6 7.4923 -0.4758 6.1027 24 6 8.9419 -0.0260 6.2956 25 1 9.0472 1.0286 6.0409 26 6 9.3926 -0.2761 7.7569 27 6 10.9310 -0.3872 7.5760 28 6 11.0505 -1.0572 6.1903 29 8 9.8231 -0.8241 5.4896 30 1 -0.3633 0.4524 0.9228 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1629 1.4034 -0.0696 34 1 1.6696 1.9732 -0.8531 35 1 1.7823 1.9302 0.9227 36 1 1.4671 -0.6468 -2.0835 37 1 3.1175 -0.5224 -1.4035 38 1 1.8448 -5.6487 0.6012 39 1 2.9050 -2.8124 1.0481 40 1 1.1206 -2.7473 1.0662 41 1 4.0104 -0.0018 0.8075 42 1 5.5130 0.8497 2.8765 43 1 6.0801 -0.7564 2.3596 44 1 5.6214 -1.6489 4.6268 45 1 5.0542 -0.0430 5.1443 46 1 6.8496 0.0580 6.8026 47 1 7.4175 -1.5477 6.2858 48 1 9.1322 0.5662 8.3979 49 1 8.9744 -1.2055 8.1434 50 1 11.3683 -1.0172 8.3505 51 1 11.3933 0.6000 7.5706 52 1 11.2099 -2.1288 6.3103 53 1 11.8810 -0.6182 5.6375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725291797.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -134.688135 kcal Electronic energy + Delta-G solvation = -30283.314494 eV Core-core repulsion = 26154.511720 eV Total energy + Delta-G solvation = -4128.802774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28065 -40.50307 -39.58808 -38.50837 -35.67889 -34.49340 -33.32474 -32.92295 -32.58990 -31.19109 -29.67414 -28.05531 -27.41418 -26.44267 -25.42744 -24.22258 -22.54336 -22.33760 -22.06879 -21.25587 -20.07859 -18.68950 -18.45767 -18.05386 -17.38263 -17.15583 -16.96529 -16.91375 -16.51791 -15.99510 -15.78915 -15.58614 -15.42290 -15.01301 -14.85068 -14.67723 -14.32729 -14.07479 -13.77157 -13.67724 -13.49373 -13.42549 -13.14600 -12.95070 -12.82786 -12.71614 -12.67122 -12.57284 -12.47039 -12.27267 -12.15056 -12.10327 -12.06554 -11.85021 -11.73626 -11.69170 -11.50864 -11.29815 -10.94692 -10.73603 -10.65540 -10.47846 -9.96892 -8.89061 -7.83893 -5.20239 1.43233 1.44443 1.54822 1.64893 2.01396 2.48480 2.75336 2.88944 3.34533 3.50403 3.55275 3.71592 3.76915 3.85399 3.97322 3.97416 4.03585 4.09502 4.14128 4.16227 4.32579 4.38299 4.41665 4.49397 4.52233 4.54280 4.56480 4.72990 4.77766 4.82125 4.83496 4.87030 4.89345 4.90161 4.97396 4.97762 5.01575 5.07617 5.15572 5.18478 5.23686 5.33272 5.37399 5.46375 5.58210 5.72387 5.76839 6.04627 6.17268 6.19941 6.60070 7.07624 7.29691 7.77611 8.42216 9.25557 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.002211 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.727881 B =12659.946452 C =14172.472138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.621 5.621 6 C -0.233 4.233 7 H 0.087 0.913 8 C -0.073 4.073 9 N -0.954 5.954 10 Si 0.977 3.023 11 H -0.260 1.260 12 H -0.297 1.297 13 H -0.295 1.295 14 C 0.193 3.807 15 C 0.136 3.864 16 H 0.078 0.922 17 N -0.699 5.699 18 C 0.513 3.487 19 O -0.588 6.588 20 C -0.126 4.126 21 C 0.084 3.916 22 O -0.396 6.396 23 C 0.057 3.943 24 C 0.078 3.922 25 H 0.081 0.919 26 C -0.145 4.145 27 C -0.147 4.147 28 C 0.036 3.964 29 O -0.407 6.407 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.032 0.968 38 H 0.242 0.758 39 H 0.000 1.000 40 H 0.005 0.995 41 H 0.411 0.589 42 H 0.133 0.867 43 H 0.106 0.894 44 H 0.036 0.964 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.048 0.952 48 H 0.108 0.892 49 H 0.082 0.918 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.069 0.931 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 17.824 12.446 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.348 5.348 6 C -0.362 4.362 7 H 0.105 0.895 8 C -0.265 4.265 9 N -0.604 5.604 10 Si 0.806 3.194 11 H -0.184 1.184 12 H -0.224 1.224 13 H -0.222 1.222 14 C 0.066 3.934 15 C 0.030 3.970 16 H 0.096 0.904 17 N -0.350 5.350 18 C 0.301 3.699 19 O -0.469 6.469 20 C -0.166 4.166 21 C 0.007 3.993 22 O -0.315 6.315 23 C -0.019 4.019 24 C 0.021 3.979 25 H 0.099 0.901 26 C -0.182 4.182 27 C -0.185 4.185 28 C -0.040 4.040 29 O -0.328 6.328 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.018 0.982 40 H 0.023 0.977 41 H 0.249 0.751 42 H 0.151 0.849 43 H 0.124 0.876 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.127 0.873 49 H 0.101 0.899 50 H 0.118 0.882 51 H 0.108 0.892 52 H 0.087 0.913 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.732 17.271 12.684 25.451 hybrid contribution -0.125 -1.752 -0.391 1.800 sum 13.607 15.519 12.293 24.023 Atomic orbital electron populations 1.21592 0.92929 1.00989 1.02622 1.21985 0.96625 0.95948 0.93021 1.21648 1.01114 0.92248 1.03059 1.21895 0.97703 0.83226 0.95846 1.44817 1.86575 1.01619 1.01759 1.19518 1.41862 0.85048 0.89795 0.89494 1.25688 1.03125 1.00416 0.97295 1.70244 1.58693 1.20371 1.11081 0.85018 0.76433 0.79316 0.78649 1.18442 1.22408 1.22223 1.21171 0.97040 0.91592 0.83551 1.22077 0.82804 0.94515 0.97580 0.90424 1.45824 1.14166 1.62057 1.12965 1.20923 0.89606 0.77428 0.81920 1.90687 1.63212 1.45150 1.47869 1.21392 0.91633 1.06035 0.97537 1.21999 0.82943 0.98767 0.95628 1.87822 1.29062 1.83770 1.30886 1.22870 0.94900 1.00227 0.83945 1.23155 0.88003 0.95571 0.91183 0.90096 1.23275 0.95884 1.04456 0.94611 1.23120 0.95932 1.02747 0.96687 1.23347 0.86714 1.00762 0.93181 1.88509 1.27947 1.72872 1.43422 0.91584 0.90321 0.95261 0.91619 0.90436 0.91586 0.93433 0.95035 0.94830 0.98207 0.97724 0.75101 0.84926 0.87592 0.94591 0.92053 0.89755 0.93408 0.87313 0.89921 0.88164 0.89209 0.91277 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 8.57 71.98 0.62 -3.16 16 2 C -0.07 -2.32 0.83 -50.79 -0.04 -2.36 16 3 C -0.12 -2.61 8.22 71.98 0.59 -2.02 16 4 C 0.14 5.26 6.14 86.86 0.53 5.79 16 5 N -0.62 -31.82 3.39 -690.79 -2.34 -34.17 16 6 C -0.23 -13.19 10.28 84.03 0.86 -12.32 16 7 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 8 C -0.07 -4.29 5.49 84.86 0.47 -3.83 16 9 N -0.95 -60.84 10.31 21.65 0.22 -60.62 16 10 Si 0.98 47.42 29.55 68.60 2.03 49.44 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 13 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 14 C 0.19 10.07 4.82 86.64 0.42 10.49 16 15 C 0.14 5.26 2.54 46.18 0.12 5.38 16 16 H 0.08 3.17 7.53 -2.39 -0.02 3.15 16 17 N -0.70 -22.58 4.51 -436.92 -1.97 -24.55 16 18 C 0.51 17.41 7.83 87.66 0.69 18.10 16 19 O -0.59 -25.32 15.67 -3.03 -0.05 -25.37 16 20 C -0.13 -3.19 6.07 29.85 0.18 -3.01 16 21 C 0.08 2.26 5.23 71.98 0.38 2.64 16 22 O -0.40 -10.34 10.33 -147.42 -1.52 -11.87 16 23 C 0.06 1.17 5.65 71.98 0.41 1.58 16 24 C 0.08 1.40 3.73 31.26 0.12 1.52 16 25 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 26 C -0.14 -1.55 6.57 32.05 0.21 -1.34 16 27 C -0.15 -1.37 7.02 31.85 0.22 -1.15 16 28 C 0.04 0.56 7.79 72.45 0.56 1.12 16 29 O -0.41 -9.64 11.03 -147.42 -1.63 -11.26 16 30 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.03 1.11 7.91 -2.39 -0.02 1.09 16 33 H 0.06 1.23 6.43 -2.39 -0.02 1.22 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 37 H 0.03 1.13 7.98 -2.39 -0.02 1.11 16 38 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.00 -0.02 7.41 -2.39 -0.02 -0.04 16 40 H 0.00 0.28 7.39 -2.39 -0.02 0.26 16 41 H 0.41 10.76 7.01 -92.71 -0.65 10.11 16 42 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.11 2.63 8.14 -2.39 -0.02 2.62 16 44 H 0.04 1.12 8.10 -2.39 -0.02 1.11 16 45 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 50 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -80.56 416.99 1.29 -79.27 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.22 Total: 21.71 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.33 Total: 17.41 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -4.09 Total: -119.33 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -3.20 Total: -48.50 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -80.56 1.29 -79.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725291797.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.421 kcal (2) G-P(sol) polarization free energy of solvation -80.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds