Wall clock time and date at job start Sat Apr 11 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 110.63878 * 2 1 4 4 C 1.34777 * 120.00271 * 59.29933 * 3 2 1 5 5 O 1.21280 * 119.99310 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00029 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47009 * 180.02562 * 6 4 3 8 8 C 1.52990 * 109.47153 * 180.02562 * 7 6 4 9 9 O 1.42908 * 109.47274 * 180.02562 * 8 7 6 10 10 C 1.42891 * 114.00209 * 180.02562 * 9 8 7 11 11 C 1.53179 * 109.54944 * 90.44068 * 10 9 8 12 12 C 1.53091 * 109.16499 * 176.84581 * 11 10 9 13 13 O 1.42907 * 109.41855 * 302.39331 * 12 11 10 14 14 C 1.42900 * 114.09567 * 61.15535 * 13 12 11 15 15 C 1.53096 * 109.41711 * 298.84590 * 14 13 12 16 16 C 1.55163 * 110.72293 * 236.86115 * 2 1 3 17 17 C 1.54900 * 101.58361 * 205.95449 * 16 2 1 18 18 N 1.47423 * 104.83179 * 37.00692 * 17 16 2 19 19 C 1.36941 * 125.65079 * 155.91593 * 18 17 16 20 20 H 1.08000 * 119.99683 * 353.89216 * 19 18 17 21 21 C 1.38812 * 120.00422 * 173.89613 * 19 18 17 22 22 N 1.31613 * 119.99977 * 6.82504 * 21 19 18 23 23 Si 1.86803 * 120.00006 * 186.82729 * 21 19 18 24 24 H 1.48503 * 109.46898 * 94.98295 * 23 21 19 25 25 H 1.48496 * 109.47046 * 214.98401 * 23 21 19 26 26 H 1.48495 * 109.46928 * 334.98608 * 23 21 19 27 27 C 1.47483 * 108.76423 * 335.89130 * 18 17 16 28 28 H 1.09003 * 109.47174 * 60.70284 * 1 2 3 29 29 H 1.09008 * 109.46889 * 180.69974 * 1 2 3 30 30 H 1.08997 * 109.47180 * 300.69853 * 1 2 3 31 31 H 0.97005 * 119.99908 * 239.29773 * 3 2 1 32 32 H 1.08995 * 109.46983 * 60.00370 * 6 4 3 33 33 H 1.09001 * 109.47441 * 300.00050 * 6 4 3 34 34 H 1.09001 * 109.46914 * 59.99840 * 7 6 4 35 35 H 1.09001 * 109.46894 * 300.00183 * 7 6 4 36 36 H 1.09001 * 109.47620 * 59.99931 * 8 7 6 37 37 H 1.09001 * 109.47091 * 299.99721 * 8 7 6 38 38 H 1.09004 * 109.61798 * 330.21844 * 10 9 8 39 39 H 1.08995 * 109.52006 * 56.93971 * 11 10 9 40 40 H 1.09003 * 109.52272 * 296.75237 * 11 10 9 41 41 H 1.08995 * 109.47990 * 182.40873 * 12 11 10 42 42 H 1.09000 * 109.47830 * 62.37618 * 12 11 10 43 43 H 1.08999 * 109.48692 * 58.82796 * 14 13 12 44 44 H 1.09006 * 109.48133 * 178.86584 * 14 13 12 45 45 H 1.09001 * 109.52305 * 177.51511 * 15 14 13 46 46 H 1.08996 * 109.52197 * 297.64018 * 15 14 13 47 47 H 1.08998 * 110.99969 * 324.02844 * 16 2 1 48 48 H 1.08997 * 111.00349 * 87.87776 * 16 2 1 49 49 H 1.08997 * 110.36797 * 155.84581 * 17 16 2 50 50 H 1.09004 * 110.36874 * 278.16949 * 17 16 2 51 51 H 0.96994 * 120.00354 * 180.02562 * 22 21 19 52 52 H 1.09001 * 110.03795 * 241.66662 * 27 18 17 53 53 H 1.08994 * 109.96777 * 120.34563 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0463 1.3710 0.0000 4 6 1.7262 2.2117 1.0036 5 8 1.0110 1.8330 1.9069 6 6 2.2579 3.6218 1.0038 7 6 1.7489 4.3585 2.2444 8 6 2.2881 5.7903 2.2444 9 8 1.8131 6.4782 3.4034 10 6 2.2609 7.8317 3.5002 11 6 1.2535 8.7555 2.8086 12 6 1.7007 10.2089 2.9855 13 8 1.8152 10.5046 4.3789 14 6 2.7774 9.7038 5.0681 15 6 2.3734 8.2301 4.9750 16 6 2.0790 -0.7934 -1.2152 17 6 3.4652 -1.2446 -0.6915 18 7 3.2494 -1.5469 0.7352 19 6 4.0126 -2.3916 1.4964 20 1 4.7936 -2.9774 1.0346 21 6 3.7824 -2.4950 2.8613 22 7 2.7481 -1.8867 3.4022 23 14 4.9405 -3.4974 3.9306 24 1 5.9618 -2.6010 4.5295 25 1 4.1675 -4.1593 5.0120 26 1 5.6129 -4.5286 3.1002 27 6 2.0761 -0.7891 1.2086 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0126 30 1 -0.3633 0.5246 0.8836 31 1 2.6187 1.6737 -0.7223 32 1 1.9157 4.1392 0.1076 33 1 3.3476 3.5993 1.0167 34 1 2.0914 3.8409 3.1404 35 1 0.6591 4.3810 2.2320 36 1 1.9452 6.3077 1.3484 37 1 3.3778 5.7681 2.2566 38 1 3.2348 7.9302 3.0206 39 1 0.2688 8.6204 3.2559 40 1 1.2082 8.5150 1.7464 41 1 0.9651 10.8733 2.5322 42 1 2.6673 10.3531 2.5027 43 1 3.7581 9.8413 4.6127 44 1 2.8173 10.0042 6.1152 45 1 3.1291 7.6137 5.4621 46 1 1.4119 8.0842 5.4670 47 1 1.4469 -1.6529 -1.4384 48 1 2.1820 -0.1489 -2.0882 49 1 3.7993 -2.1362 -1.2219 50 1 4.1929 -0.4408 -0.8031 51 1 2.5874 -1.9586 4.3560 52 1 2.3712 -0.0991 1.9991 53 1 1.3141 -1.4754 1.5780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733409286.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:50 Heat of formation + Delta-G solvation = -141.146623 kcal Electronic energy + Delta-G solvation = -30277.285476 eV Core-core repulsion = 26148.202640 eV Total energy + Delta-G solvation = -4129.082836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19654 -40.58477 -39.01346 -38.46769 -35.62668 -34.91199 -33.74411 -33.06000 -32.11087 -31.71774 -29.93256 -27.95678 -27.67747 -25.50974 -25.14407 -24.59543 -23.19533 -22.19027 -21.56176 -21.12740 -20.39633 -18.90763 -18.26630 -17.74445 -17.34233 -17.24341 -16.95361 -16.81753 -16.28652 -16.04293 -15.80516 -15.66007 -15.28706 -15.16596 -14.89552 -14.62525 -14.24098 -14.06692 -14.02325 -13.83256 -13.43181 -13.37748 -13.25452 -13.12998 -12.97481 -12.74632 -12.74094 -12.50347 -12.39079 -12.23047 -12.13795 -11.97917 -11.89481 -11.85055 -11.74472 -11.68238 -11.47846 -11.33933 -10.77886 -10.67852 -10.47288 -10.44276 -9.88100 -8.87569 -7.83945 -5.20418 1.41030 1.43722 1.52997 1.84195 2.23601 2.47933 2.69317 2.95875 3.32820 3.61326 3.73652 3.75191 3.77776 3.85721 3.96116 4.01180 4.04200 4.08590 4.15031 4.21433 4.25161 4.33883 4.45329 4.52082 4.54321 4.57875 4.62737 4.65179 4.68667 4.75109 4.75580 4.82076 4.82693 4.87171 5.03189 5.03745 5.08886 5.12856 5.14354 5.19544 5.22154 5.30539 5.34517 5.45293 5.51329 5.79724 5.95889 6.19862 6.21669 6.30577 6.79022 7.07988 7.52515 7.79296 8.43698 9.24676 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002120 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.768148 B =13206.458299 C =14616.631370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.149 3.851 3 N -0.702 5.702 4 C 0.499 3.501 5 O -0.580 6.580 6 C -0.122 4.122 7 C -0.099 4.099 8 C 0.068 3.932 9 O -0.407 6.407 10 C 0.082 3.918 11 C -0.175 4.175 12 C 0.062 3.938 13 O -0.405 6.405 14 C 0.065 3.935 15 C -0.157 4.157 16 C -0.114 4.114 17 C 0.125 3.875 18 N -0.631 5.631 19 C -0.240 4.240 20 H 0.086 0.914 21 C -0.073 4.073 22 N -0.948 5.948 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.261 1.261 27 C 0.196 3.804 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.413 0.587 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.048 0.952 50 H 0.032 0.968 51 H 0.241 0.759 52 H 0.011 0.989 53 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 24.563 -10.515 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.062 3.938 3 N -0.355 5.355 4 C 0.287 3.713 5 O -0.459 6.459 6 C -0.161 4.161 7 C -0.138 4.138 8 C -0.008 4.008 9 O -0.327 6.327 10 C 0.025 3.975 11 C -0.213 4.213 12 C -0.015 4.015 13 O -0.324 6.324 14 C -0.011 4.011 15 C -0.194 4.194 16 C -0.152 4.152 17 C 0.000 4.000 18 N -0.358 5.358 19 C -0.369 4.369 20 H 0.104 0.896 21 C -0.266 4.266 22 N -0.597 5.597 23 Si 0.804 3.196 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.185 1.185 27 C 0.070 3.930 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.250 0.750 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.135 0.865 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.051 0.949 52 H 0.029 0.971 53 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -0.012 24.260 -9.478 26.046 hybrid contribution 0.749 -1.153 0.914 1.651 sum 0.737 23.108 -8.564 24.655 Atomic orbital electron populations 1.21901 0.93583 1.01873 1.02390 1.21437 0.93905 0.81855 0.96648 1.45817 1.52226 1.11224 1.26228 1.21336 0.80169 0.88795 0.80981 1.90727 1.39441 1.78642 1.37070 1.21516 1.03343 0.90300 1.00962 1.21111 1.01179 0.94065 0.97419 1.22568 0.98375 0.91433 0.88386 1.87944 1.74320 1.25196 1.45267 1.22260 0.97309 0.81343 0.96587 1.22708 1.00057 0.96222 1.02327 1.22705 1.02299 0.94662 0.81801 1.87919 1.61601 1.60414 1.22455 1.22675 0.91725 0.87925 0.98776 1.22328 1.03185 0.98103 0.95832 1.23007 0.96144 1.00024 0.96069 1.21830 0.96022 0.98132 0.84000 1.44968 1.32051 1.51361 1.07401 1.19483 1.11272 1.16434 0.89741 0.89582 1.25760 0.99961 1.02465 0.98387 1.70286 1.29822 1.49236 1.10364 0.85090 0.77963 0.78075 0.78452 1.21641 1.22595 1.18540 1.21184 0.87518 0.91645 0.92621 0.89912 0.92577 0.93593 0.74978 0.84786 0.87051 0.94115 0.92270 0.90683 0.91848 0.90346 0.92000 0.89241 0.87345 0.91320 0.91281 0.87284 0.89979 0.91943 0.89934 0.86474 0.93417 0.95030 0.94939 0.97055 0.98623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.41 71.98 0.61 -4.24 16 2 C 0.15 5.48 0.81 4.79 0.00 5.48 16 3 N -0.70 -21.18 5.15 -417.56 -2.15 -23.33 16 4 C 0.50 16.83 7.04 87.66 0.62 17.45 16 5 O -0.58 -26.58 12.93 -3.03 -0.04 -26.62 16 6 C -0.12 -2.62 5.70 29.85 0.17 -2.45 16 7 C -0.10 -2.59 4.87 30.59 0.15 -2.44 16 8 C 0.07 1.30 5.75 71.98 0.41 1.71 16 9 O -0.41 -9.65 10.00 -148.98 -1.49 -11.14 16 10 C 0.08 1.41 2.70 30.71 0.08 1.49 16 11 C -0.18 -2.55 5.76 30.68 0.18 -2.37 16 12 C 0.06 0.74 6.84 72.01 0.49 1.24 16 13 O -0.40 -6.83 10.77 -148.98 -1.60 -8.44 16 14 C 0.07 0.87 6.84 72.01 0.49 1.36 16 15 C -0.16 -2.65 5.79 30.69 0.18 -2.47 16 16 C -0.11 -3.39 6.08 31.99 0.19 -3.20 16 17 C 0.12 4.74 7.21 86.85 0.63 5.36 16 18 N -0.63 -33.06 3.41 -690.83 -2.35 -35.42 16 19 C -0.24 -13.88 10.26 84.03 0.86 -13.01 16 20 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 21 C -0.07 -4.38 5.48 84.86 0.47 -3.92 16 22 N -0.95 -62.01 10.36 21.65 0.22 -61.78 16 23 Si 0.98 48.04 29.56 68.60 2.03 50.06 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.20 10.36 4.32 86.64 0.37 10.73 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.98 8.12 -2.38 -0.02 1.96 16 30 H 0.04 1.89 6.20 -2.39 -0.01 1.87 16 31 H 0.41 8.70 8.48 -92.70 -0.79 7.91 16 32 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 35 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 36 H 0.08 1.01 7.99 -2.39 -0.02 0.99 16 37 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 38 H 0.08 1.04 7.79 -2.38 -0.02 1.02 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.02 7.99 -2.39 -0.02 1.00 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.08 2.45 8.05 -2.39 -0.02 2.43 16 48 H 0.12 2.31 8.06 -2.39 -0.02 2.29 16 49 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 52 H 0.01 0.70 5.91 -2.39 -0.01 0.69 16 53 H 0.00 -0.27 7.22 -2.39 -0.02 -0.29 16 Total: -1.00 -86.11 411.31 0.61 -85.50 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.09 Total: 20.44 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 5.91 Total: 10.72 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -4.28 Total: -120.53 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -3.13 Total: -46.20 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -86.11 0.61 -85.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733409286.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.648 kcal (2) G-P(sol) polarization free energy of solvation -86.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds