Wall clock time and date at job start Sat Apr 11 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.52215 * 2 1 4 4 C 1.53311 * 109.51226 * 239.83689 * 2 1 3 5 5 C 1.53177 * 108.96735 * 183.14024 * 4 2 1 6 6 C 1.53098 * 109.21356 * 56.95427 * 5 4 2 7 7 H 1.09000 * 109.47759 * 62.35591 * 6 5 4 8 8 C 1.52991 * 109.47826 * 182.37378 * 6 5 4 9 9 C 1.50701 * 109.47259 * 185.00015 * 8 6 5 10 10 O 1.21281 * 119.99814 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00320 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00049 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.46988 * 179.97438 * 12 11 9 14 14 O 1.42905 * 110.88852 * 64.30276 * 13 12 11 15 15 C 1.55160 * 111.00644 * 188.17809 * 13 12 11 16 16 C 1.54320 * 102.94502 * 153.57641 * 15 13 12 17 17 N 1.47025 * 107.27079 * 337.81136 * 16 15 13 18 18 C 1.36942 * 125.64896 * 178.97427 * 17 16 15 19 19 H 1.07992 * 120.00213 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99590 * 359.97331 * 18 17 16 21 21 N 1.31620 * 120.00346 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99698 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47334 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47083 * 119.99991 * 22 20 18 25 25 H 1.48497 * 109.47164 * 240.00055 * 22 20 18 26 26 C 1.47462 * 108.72243 * 358.97141 * 17 16 15 27 27 O 1.42899 * 109.41440 * 302.35638 * 6 5 4 28 28 C 1.42904 * 114.09711 * 61.16120 * 27 6 5 29 29 H 1.09000 * 109.47817 * 299.87683 * 1 2 3 30 30 H 1.09000 * 109.47017 * 59.88244 * 1 2 3 31 31 H 1.09005 * 109.47279 * 179.87530 * 1 2 3 32 32 H 1.09003 * 109.47370 * 180.12123 * 3 2 1 33 33 H 1.09003 * 109.47081 * 300.12137 * 3 2 1 34 34 H 1.09002 * 109.47250 * 60.12173 * 3 2 1 35 35 H 1.09001 * 109.62384 * 63.26611 * 4 2 1 36 36 H 1.09002 * 109.52711 * 302.95955 * 4 2 1 37 37 H 1.09002 * 109.52487 * 297.01638 * 5 4 2 38 38 H 1.09004 * 109.52023 * 176.89257 * 5 4 2 39 39 H 1.09004 * 109.47783 * 304.99866 * 8 6 5 40 40 H 1.09003 * 109.47491 * 65.00163 * 8 6 5 41 41 H 0.97000 * 119.99686 * 359.97438 * 11 9 8 42 42 H 1.08995 * 109.46615 * 299.99931 * 12 11 9 43 43 H 1.09004 * 109.46685 * 59.99818 * 12 11 9 44 44 H 0.96698 * 113.99258 * 300.69654 * 14 13 12 45 45 H 1.08991 * 110.72103 * 271.94789 * 15 13 12 46 46 H 1.09002 * 110.71373 * 35.03538 * 15 13 12 47 47 H 1.09000 * 109.88327 * 97.22593 * 16 15 13 48 48 H 1.08996 * 109.88411 * 218.23836 * 16 15 13 49 49 H 0.96998 * 120.00205 * 179.97438 * 21 20 18 50 50 H 1.08999 * 110.35210 * 265.25164 * 26 17 16 51 51 H 1.09004 * 110.40399 * 142.91989 * 26 17 16 52 52 H 1.09002 * 109.48461 * 58.81736 * 28 27 6 53 53 H 1.09002 * 109.48312 * 178.85406 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0420 -0.7261 -1.2494 5 6 3.5716 -0.7877 -1.1976 6 6 4.0043 -1.4814 0.0968 7 1 3.6318 -2.5058 0.1023 8 6 5.5318 -1.4937 0.1831 9 6 5.9603 -2.2827 1.3934 10 8 5.1261 -2.7862 2.1156 11 7 7.2706 -2.4290 1.6733 12 6 7.6871 -3.1965 2.8496 13 6 9.2145 -3.2086 2.9359 14 8 9.7234 -1.8901 3.1477 15 6 9.7013 -4.1774 4.0458 16 6 11.1091 -4.5811 3.5594 17 7 11.1526 -4.3494 2.1082 18 6 12.2353 -4.5643 1.2977 19 1 12.1658 -4.3628 0.2391 20 6 13.4221 -5.0412 1.8371 21 7 13.5067 -5.2873 3.1274 22 14 14.8989 -5.3351 0.7315 23 1 14.5472 -4.9842 -0.6679 24 1 16.0320 -4.4885 1.1838 25 1 15.2915 -6.7656 0.7999 26 6 9.8373 -3.8473 1.6694 27 8 3.4694 -0.7734 1.2169 28 6 2.0416 -0.7241 1.2482 29 1 -0.3635 0.5119 0.8910 30 1 -0.3633 0.5157 -0.8889 31 1 -0.3634 -1.0277 -0.0022 32 1 3.1312 1.4411 -0.0022 33 1 1.6765 1.9569 -0.8889 34 1 1.6801 1.9556 0.8911 35 1 1.7289 -0.1842 -2.1418 36 1 1.6369 -1.7377 -1.2746 37 1 3.9780 0.2234 -1.2224 38 1 3.9427 -1.3506 -2.0541 39 1 5.9429 -1.9544 -0.7152 40 1 5.8992 -0.4709 0.2675 41 1 7.9378 -2.0266 1.0955 42 1 7.2757 -2.7364 3.7479 43 1 7.3202 -4.2194 2.7645 44 1 9.4860 -1.2607 2.4531 45 1 9.7571 -3.6661 5.0067 46 1 9.0485 -5.0479 4.1112 47 1 11.8623 -3.9688 4.0553 48 1 11.2876 -5.6346 3.7745 49 1 14.3359 -5.6208 3.5042 50 1 9.2164 -4.6701 1.3150 51 1 9.9583 -3.0980 0.8870 52 1 1.6431 -1.7384 1.2688 53 1 1.7157 -0.1872 2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733490566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:10 Heat of formation + Delta-G solvation = -147.580341 kcal Electronic energy + Delta-G solvation = -30720.808349 eV Core-core repulsion = 26591.446527 eV Total energy + Delta-G solvation = -4129.361822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31173 -40.62169 -39.66160 -36.76432 -36.23453 -35.22927 -34.15701 -33.96135 -31.54919 -30.80661 -29.46719 -28.15840 -27.50981 -26.85537 -25.67581 -24.61053 -22.69700 -22.18834 -21.39654 -21.17146 -19.80361 -18.91445 -18.51175 -17.54489 -17.37513 -16.89948 -16.71310 -16.47168 -16.24783 -15.93366 -15.78280 -15.68011 -15.24338 -15.04226 -14.98088 -14.52983 -14.37069 -13.97080 -13.88765 -13.65007 -13.51148 -13.23168 -13.02931 -12.95317 -12.86345 -12.80183 -12.78581 -12.72751 -12.43467 -12.34576 -12.08402 -11.97109 -11.92416 -11.79564 -11.75021 -11.69904 -11.34065 -11.09496 -10.94878 -10.75223 -10.69166 -10.19059 -10.08854 -8.88382 -7.84195 -5.19752 1.46412 1.47802 1.57849 1.74063 2.17222 2.49558 2.89249 3.19602 3.35147 3.48727 3.62778 3.69938 3.77562 3.81743 3.85748 3.94134 3.99108 4.06477 4.19585 4.29997 4.42896 4.48833 4.58068 4.59606 4.65732 4.66872 4.69331 4.75776 4.81512 4.83233 4.86327 4.91024 4.93457 4.97445 4.98190 5.04716 5.09063 5.10092 5.15550 5.25640 5.33039 5.39746 5.41447 5.45478 5.56169 5.63610 5.76441 6.19250 6.38894 6.56320 6.84484 7.09613 7.31329 7.77200 8.41508 9.26824 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.001974 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.500789 B =14179.921797 C =14763.868468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.146 4.146 6 C 0.103 3.897 7 H 0.044 0.956 8 C -0.130 4.130 9 C 0.512 3.488 10 O -0.576 6.576 11 N -0.721 5.721 12 C 0.121 3.879 13 C 0.123 3.877 14 O -0.554 6.554 15 C -0.123 4.123 16 C 0.190 3.810 17 N -0.621 5.621 18 C -0.238 4.238 19 H 0.088 0.912 20 C -0.072 4.072 21 N -0.953 5.953 22 Si 0.980 3.020 23 H -0.261 1.261 24 H -0.295 1.295 25 H -0.294 1.294 26 C 0.114 3.886 27 O -0.388 6.388 28 C 0.071 3.929 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.412 0.588 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.384 0.616 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.007 0.993 48 H 0.008 0.992 49 H 0.245 0.755 50 H 0.034 0.966 51 H 0.058 0.942 52 H 0.039 0.961 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.665 13.108 -10.572 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.148 4.148 5 C -0.184 4.184 6 C 0.045 3.955 7 H 0.062 0.938 8 C -0.169 4.169 9 C 0.300 3.700 10 O -0.455 6.455 11 N -0.375 5.375 12 C -0.004 4.004 13 C 0.080 3.920 14 O -0.361 6.361 15 C -0.161 4.161 16 C 0.065 3.935 17 N -0.347 5.347 18 C -0.367 4.367 19 H 0.106 0.894 20 C -0.264 4.264 21 N -0.603 5.603 22 Si 0.809 3.191 23 H -0.185 1.185 24 H -0.222 1.222 25 H -0.221 1.221 26 C -0.011 4.011 27 O -0.307 6.307 28 C -0.006 4.006 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.248 0.752 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.233 0.767 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.025 0.975 48 H 0.027 0.973 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.077 0.923 52 H 0.057 0.943 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.695 12.488 -9.382 30.070 hybrid contribution 1.110 -0.303 -0.742 1.369 sum -24.586 12.185 -10.123 29.247 Atomic orbital electron populations 1.21778 0.93128 1.02050 1.02587 1.21228 0.96624 0.96649 0.95531 1.21782 1.01297 0.94217 1.01774 1.21691 0.95052 1.00474 0.97607 1.22245 0.96693 1.02432 0.97017 1.21839 0.92293 0.94821 0.86576 0.93779 1.21846 0.95395 1.02844 0.96845 1.21174 0.81601 0.80029 0.87207 1.90700 1.52455 1.50181 1.52135 1.45907 1.07758 1.55124 1.28681 1.21642 0.92583 0.97047 0.89119 1.22386 0.90111 0.83482 0.95986 1.86611 1.78639 1.19539 1.51286 1.22794 0.97312 0.97979 0.98030 1.20810 0.92151 0.96626 0.83908 1.44654 1.09019 1.76732 1.04290 1.19528 0.89669 1.36310 0.91229 0.89407 1.25715 1.01010 1.02192 0.97529 1.70210 1.26150 1.52073 1.11837 0.84976 0.78960 0.76715 0.78466 1.18503 1.22209 1.22147 1.22348 0.86714 0.96622 0.95458 1.87932 1.20641 1.75786 1.46351 1.22649 0.80694 0.99001 0.98262 0.92289 0.91393 0.92655 0.92611 0.91802 0.93033 0.90029 0.92152 0.89986 0.89096 0.84374 0.86109 0.75171 0.91261 0.90996 0.76749 0.90182 0.88907 0.97468 0.97336 0.94532 0.94816 0.92335 0.94292 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.49 71.98 0.61 -0.78 16 2 C -0.10 -1.27 0.77 -52.05 -0.04 -1.31 16 3 C -0.13 -1.62 8.08 71.98 0.58 -1.03 16 4 C -0.11 -1.24 4.83 30.76 0.15 -1.09 16 5 C -0.15 -1.65 5.05 30.69 0.15 -1.50 16 6 C 0.10 1.80 2.19 30.62 0.07 1.87 16 7 H 0.04 0.94 7.95 -2.39 -0.02 0.92 16 8 C -0.13 -1.92 5.41 29.85 0.16 -1.76 16 9 C 0.51 12.06 7.71 87.66 0.68 12.74 16 10 O -0.58 -18.97 15.42 10.68 0.16 -18.80 16 11 N -0.72 -15.46 5.16 -463.07 -2.39 -17.85 16 12 C 0.12 3.28 4.92 86.38 0.42 3.71 16 13 C 0.12 3.97 0.95 -9.40 -0.01 3.96 16 14 O -0.55 -18.14 13.19 -148.98 -1.96 -20.11 16 15 C -0.12 -4.62 6.16 31.78 0.20 -4.43 16 16 C 0.19 9.67 5.37 86.73 0.47 10.13 16 17 N -0.62 -31.49 3.40 -691.89 -2.35 -33.84 16 18 C -0.24 -13.21 10.28 84.03 0.86 -12.34 16 19 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 20 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 21 N -0.95 -58.50 10.31 21.65 0.22 -58.28 16 22 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 C 0.11 4.26 5.86 86.85 0.51 4.77 16 27 O -0.39 -8.70 9.07 -135.27 -1.23 -9.92 16 28 C 0.07 1.28 5.54 72.02 0.40 1.68 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.05 0.77 6.14 -2.39 -0.01 0.76 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.85 6.62 -2.39 -0.02 0.84 16 38 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.41 6.62 7.29 -92.71 -0.68 5.94 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 44 H 0.38 8.91 8.29 -74.06 -0.61 8.29 16 45 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.09 3.11 7.98 -2.39 -0.02 3.09 16 47 H 0.01 0.41 7.38 -2.39 -0.02 0.40 16 48 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 49 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.03 1.25 8.04 -2.39 -0.02 1.23 16 51 H 0.06 1.95 7.90 -2.39 -0.02 1.93 16 52 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -77.69 407.82 -0.24 -77.93 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.40 Total: 22.08 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.67 Total: 10.96 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.51 Total: -109.97 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -3.03 Total: -48.84 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -77.69 -0.24 -77.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733490566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.651 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds