Wall clock time and date at job start Sat Apr 11 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99824 * 2 1 4 4 C 1.53006 * 109.46752 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.54356 * 59.82287 * 4 3 2 6 6 O 1.21284 * 120.00172 * 119.99934 * 5 4 3 7 7 N 1.34776 * 119.99905 * 299.99893 * 5 4 3 8 8 C 1.46507 * 120.00087 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.64016 * 31.85774 * 8 7 5 10 10 C 1.54316 * 110.71727 * 268.52028 * 8 7 5 11 11 N 1.47021 * 107.27146 * 263.82807 * 10 8 7 12 12 C 1.36939 * 125.64725 * 181.02915 * 11 10 8 13 13 H 1.08005 * 119.99756 * 180.02562 * 12 11 10 14 14 C 1.38808 * 120.00303 * 0.04037 * 12 11 10 15 15 N 1.31618 * 119.99694 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00348 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47249 * 59.99749 * 16 14 12 18 18 H 1.48500 * 109.47417 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46899 * 300.00016 * 16 14 12 20 20 C 1.47422 * 108.70471 * 1.05905 * 11 10 8 21 21 C 1.54910 * 104.83095 * 335.87435 * 20 11 10 22 22 C 1.52995 * 111.00383 * 278.93185 * 21 20 11 23 23 C 1.53000 * 111.00278 * 155.08178 * 21 20 11 24 24 C 1.53178 * 109.54298 * 299.55216 * 4 3 2 25 25 C 1.53092 * 109.16092 * 183.15450 * 24 4 3 26 26 O 1.42902 * 109.41497 * 57.61181 * 25 24 4 27 27 C 1.42909 * 114.09570 * 298.83652 * 26 25 24 28 28 C 1.53091 * 109.41249 * 61.16192 * 27 26 25 29 29 H 1.09002 * 109.47367 * 59.99723 * 1 2 3 30 30 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46688 * 300.00244 * 1 2 3 32 32 H 1.08993 * 109.47732 * 60.00254 * 3 2 1 33 33 H 1.09000 * 109.47141 * 299.99893 * 3 2 1 34 34 H 0.97001 * 120.00268 * 359.97438 * 7 5 4 35 35 H 1.08997 * 109.88701 * 23.24475 * 10 8 7 36 36 H 1.09008 * 109.88209 * 144.41108 * 10 8 7 37 37 H 0.97001 * 120.00165 * 179.97438 * 15 14 12 38 38 H 1.08993 * 110.37050 * 217.03404 * 20 11 10 39 39 H 1.09003 * 110.36337 * 94.70789 * 20 11 10 40 40 H 1.08999 * 109.47154 * 172.19771 * 22 21 20 41 41 H 1.09008 * 109.46929 * 292.19709 * 22 21 20 42 42 H 1.09003 * 109.47135 * 52.19648 * 22 21 20 43 43 H 1.09001 * 109.47118 * 307.79866 * 23 21 20 44 44 H 1.08996 * 109.47477 * 67.80541 * 23 21 20 45 45 H 1.09000 * 109.47019 * 187.80306 * 23 21 20 46 46 H 1.09003 * 109.52263 * 303.06248 * 24 4 3 47 47 H 1.08998 * 109.52175 * 63.25140 * 24 4 3 48 48 H 1.09003 * 109.48093 * 297.62866 * 25 24 4 49 49 H 1.08998 * 109.48762 * 177.59924 * 25 24 4 50 50 H 1.09000 * 109.48295 * 301.18177 * 27 26 25 51 51 H 1.08994 * 109.48850 * 181.14586 * 27 26 25 52 52 H 1.08995 * 109.52138 * 182.48180 * 28 27 26 53 53 H 1.08998 * 109.52208 * 62.29565 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9811 0.4334 -1.2286 6 8 4.7228 0.9640 -2.0283 7 7 3.5555 -0.8281 -1.4383 8 6 3.9892 -1.5587 -2.6319 9 1 4.9927 -1.2519 -2.9266 10 6 2.9896 -1.3551 -3.7898 11 7 2.0729 -2.5044 -3.7822 12 6 1.0485 -2.7140 -4.6664 13 1 0.4283 -3.5936 -4.5758 14 6 0.8072 -1.7962 -5.6795 15 7 1.5628 -0.7242 -5.7898 16 14 -0.5906 -2.0818 -6.8852 17 1 -1.8769 -2.1462 -6.1458 18 1 -0.6374 -0.9646 -7.8625 19 1 -0.3692 -3.3613 -7.6057 20 6 2.4386 -3.3935 -2.6646 21 6 3.9325 -3.0900 -2.3889 22 6 4.8344 -3.8354 -3.3747 23 6 4.3037 -3.4303 -0.9442 24 6 3.9905 0.4342 1.2548 25 6 5.5204 0.3871 1.2851 26 8 6.0374 1.7189 1.2520 27 6 5.6836 2.4531 0.0781 28 6 4.1603 2.5832 -0.0007 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 2.9626 -1.2526 -0.7986 35 1 2.4290 -0.4328 -3.6378 36 1 3.5247 -1.3140 -4.7386 37 1 1.3946 -0.0830 -6.4979 38 1 2.3103 -4.4369 -2.9522 39 1 1.8365 -3.1647 -1.7852 40 1 5.8640 -3.4998 -3.2503 41 1 4.7757 -4.9067 -3.1822 42 1 4.5061 -3.6308 -4.3937 43 1 3.6046 -2.9425 -0.2649 44 1 4.2559 -4.5098 -0.8013 45 1 5.3152 -3.0809 -0.7370 46 1 3.6243 0.9518 2.1414 47 1 3.5952 -0.5814 1.2354 48 1 5.8844 -0.1658 0.4191 49 1 5.8509 -0.1085 2.1979 50 1 6.0496 1.9272 -0.8037 51 1 6.1314 3.4459 0.1214 52 1 3.8863 3.1046 -0.9179 53 1 3.7975 3.1443 0.8605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734144877.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:23 Heat of formation + Delta-G solvation = -126.695120 kcal Electronic energy + Delta-G solvation = -33754.231525 eV Core-core repulsion = 29625.775354 eV Total energy + Delta-G solvation = -4128.456171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07827 -40.32874 -38.76572 -38.67251 -35.67327 -35.20709 -34.34910 -32.59995 -32.00904 -29.82511 -29.15661 -28.05935 -27.41838 -26.95424 -25.48321 -24.53518 -24.13485 -23.04026 -21.90422 -20.71623 -19.80079 -18.67920 -17.93272 -17.56909 -17.44937 -17.03016 -16.83063 -16.67287 -16.56430 -15.96112 -15.68958 -15.59474 -15.50804 -15.31005 -14.79775 -14.75414 -14.49933 -13.95848 -13.80114 -13.46795 -13.36287 -13.30656 -13.21540 -13.11976 -12.98479 -12.90051 -12.77981 -12.64941 -12.58990 -12.38057 -12.21863 -12.16950 -11.84769 -11.74254 -11.61946 -11.52688 -11.43459 -11.29930 -10.82535 -10.72862 -10.60087 -10.31764 -9.82735 -8.87561 -7.82441 -5.18764 1.42477 1.45972 1.52374 1.66177 2.27645 2.49061 2.64598 2.96771 3.35304 3.51358 3.55068 3.59416 3.71950 3.83224 3.98459 3.99389 4.06284 4.09709 4.28982 4.33244 4.38276 4.41816 4.51955 4.54148 4.55032 4.61843 4.66017 4.68968 4.74036 4.81113 4.84666 4.87056 4.88814 4.90682 4.96110 5.04215 5.06648 5.08589 5.14300 5.17675 5.19331 5.34246 5.40119 5.46067 5.56878 5.73338 5.82219 6.10678 6.18052 6.23979 6.72758 7.09010 7.39531 7.79163 8.44282 9.26601 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.004280 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.255232 B = 6539.999458 C = 7168.230083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.402 6.402 3 C 0.076 3.924 4 C -0.073 4.073 5 C 0.516 3.484 6 O -0.586 6.586 7 N -0.684 5.684 8 C 0.134 3.866 9 H 0.072 0.928 10 C 0.200 3.800 11 N -0.616 5.616 12 C -0.234 4.234 13 H 0.086 0.914 14 C -0.069 4.069 15 N -0.954 5.954 16 Si 0.976 3.024 17 H -0.275 1.275 18 H -0.300 1.300 19 H -0.275 1.275 20 C 0.141 3.859 21 C -0.076 4.076 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.128 4.128 25 C 0.055 3.945 26 O -0.392 6.392 27 C 0.053 3.947 28 C -0.125 4.125 29 H 0.022 0.978 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.032 0.968 34 H 0.412 0.588 35 H -0.003 1.003 36 H 0.000 1.000 37 H 0.242 0.758 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.030 0.970 49 H 0.123 0.877 50 H 0.047 0.953 51 H 0.109 0.891 52 H 0.066 0.934 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 0.456 20.113 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.321 6.321 3 C 0.000 4.000 4 C -0.076 4.076 5 C 0.303 3.697 6 O -0.467 6.467 7 N -0.336 5.336 8 C 0.028 3.972 9 H 0.090 0.910 10 C 0.074 3.926 11 N -0.342 5.342 12 C -0.363 4.363 13 H 0.104 0.896 14 C -0.261 4.261 15 N -0.604 5.604 16 Si 0.804 3.196 17 H -0.201 1.201 18 H -0.227 1.227 19 H -0.201 1.201 20 C 0.016 3.984 21 C -0.077 4.077 22 C -0.180 4.180 23 C -0.180 4.180 24 C -0.166 4.166 25 C -0.021 4.021 26 O -0.311 6.311 27 C -0.023 4.023 28 C -0.163 4.163 29 H 0.041 0.959 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.252 0.748 35 H 0.015 0.985 36 H 0.019 0.981 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.124 0.876 47 H 0.109 0.891 48 H 0.048 0.952 49 H 0.141 0.859 50 H 0.066 0.934 51 H 0.127 0.873 52 H 0.085 0.915 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.500 0.792 19.529 20.057 hybrid contribution -1.565 0.315 -1.836 2.433 sum 2.935 1.107 17.693 17.969 Atomic orbital electron populations 1.22792 0.79336 1.03578 1.00236 1.87653 1.21343 1.27668 1.95485 1.22506 0.90491 0.85444 1.01599 1.20994 0.95421 0.97266 0.93944 1.20905 0.79547 0.81831 0.87385 1.90622 1.38912 1.68398 1.48728 1.45926 1.49313 1.14048 1.24343 1.22066 0.96984 0.92437 0.85747 0.90972 1.20994 0.89352 0.89197 0.93081 1.44625 1.34584 1.22923 1.32083 1.19425 1.06082 1.05286 1.05473 0.89610 1.25638 1.02031 0.97093 1.01362 1.70244 1.42122 1.13252 1.34777 0.85192 0.79218 0.76668 0.78511 1.20091 1.22712 1.20136 1.21842 0.92782 0.93937 0.89793 1.21982 0.95739 0.91973 0.98021 1.21586 0.98354 1.00493 0.97604 1.21630 1.01554 1.02646 0.92128 1.22189 0.96509 1.02090 0.95822 1.22736 0.92943 0.83790 1.02681 1.87865 1.75077 1.26190 1.41923 1.22746 0.94108 0.97539 0.87910 1.21970 0.96686 0.93783 1.03815 0.95929 0.89014 0.91173 0.88571 0.94990 0.74789 0.98486 0.98149 0.94890 0.93468 0.95450 0.91778 0.90248 0.95208 0.92161 0.90250 0.91787 0.87617 0.89074 0.95182 0.85905 0.93433 0.87304 0.91481 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -10.39 7.62 -148.98 -1.14 -11.53 16 3 C 0.08 1.83 4.80 71.98 0.35 2.17 16 4 C -0.07 -1.85 0.53 -52.81 -0.03 -1.87 16 5 C 0.52 18.09 5.15 87.66 0.45 18.54 16 6 O -0.59 -25.26 13.50 -3.04 -0.04 -25.30 16 7 N -0.68 -23.70 3.98 -436.92 -1.74 -25.44 16 8 C 0.13 5.39 2.59 46.18 0.12 5.51 16 9 H 0.07 3.10 7.45 -2.39 -0.02 3.08 16 10 C 0.20 10.59 4.79 86.73 0.42 11.00 16 11 N -0.62 -31.65 3.38 -692.01 -2.34 -33.99 16 12 C -0.23 -13.14 10.28 84.03 0.86 -12.28 16 13 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 14 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 15 N -0.95 -60.47 10.31 21.65 0.22 -60.25 16 16 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 C 0.14 5.53 6.12 86.86 0.53 6.06 16 21 C -0.08 -2.48 0.83 -50.79 -0.04 -2.52 16 22 C -0.12 -3.88 8.57 71.98 0.62 -3.27 16 23 C -0.12 -2.83 8.22 71.98 0.59 -2.24 16 24 C -0.13 -2.45 4.67 30.68 0.14 -2.30 16 25 C 0.06 1.15 6.62 72.01 0.48 1.63 16 26 O -0.39 -9.59 10.77 -148.98 -1.60 -11.20 16 27 C 0.05 1.36 6.55 72.01 0.47 1.83 16 28 C -0.12 -2.94 4.56 30.68 0.14 -2.80 16 29 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.41 12.84 4.49 -92.71 -0.42 12.43 16 35 H 0.00 -0.19 7.41 -2.39 -0.02 -0.21 16 36 H 0.00 0.02 7.38 -2.38 -0.02 0.01 16 37 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 39 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16 43 H 0.06 1.32 6.48 -2.39 -0.02 1.30 16 44 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.09 1.65 7.17 -2.39 -0.02 1.63 16 48 H 0.03 0.76 7.38 -2.39 -0.02 0.74 16 49 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.05 1.54 5.82 -2.39 -0.01 1.52 16 51 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 52 H 0.07 1.81 8.02 -2.39 -0.02 1.79 16 53 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -76.02 398.74 2.67 -73.35 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.47 Total: 27.52 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 6.81 Total: 17.99 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -3.85 Total: -119.67 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -2.78 Total: -48.03 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.02 2.67 -73.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734144877.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.341 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds