Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 110.78021 * 2 1 4 4 C 1.54328 * 110.71627 * 123.23406 * 2 1 3 5 5 N 1.47023 * 107.26846 * 140.55657 * 4 2 1 6 6 C 1.34782 * 125.64822 * 181.01459 * 5 4 2 7 7 O 1.21279 * 119.99710 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00128 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47317 * 180.02562 * 8 6 5 10 10 O 1.42897 * 109.47249 * 180.02562 * 9 8 6 11 11 C 1.42897 * 113.99940 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46999 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.27448 * 54.30219 * 12 11 10 14 14 C 1.54945 * 110.39100 * 176.44811 * 12 11 10 15 15 C 1.55304 * 100.94045 * 155.40253 * 14 12 11 16 16 C 1.54376 * 102.25567 * 325.86882 * 15 14 12 17 17 O 1.43240 * 107.58930 * 21.35352 * 16 15 14 18 18 C 1.47429 * 108.70542 * 1.28984 * 5 4 2 19 19 C 1.55126 * 104.71807 * 335.54831 * 18 5 4 20 20 H 1.09001 * 110.90723 * 155.27157 * 19 18 5 21 21 N 1.46499 * 111.22951 * 279.17749 * 19 18 5 22 22 C 1.36928 * 119.99946 * 267.20935 * 21 19 18 23 23 H 1.07997 * 120.00193 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99818 * 179.97438 * 22 21 19 25 25 N 1.31612 * 119.99929 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99877 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47326 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47275 * 119.99855 * 26 24 22 29 29 H 1.48497 * 109.47193 * 239.99831 * 26 24 22 30 30 H 1.08997 * 109.47441 * 298.21567 * 1 2 3 31 31 H 1.08998 * 109.47096 * 58.22054 * 1 2 3 32 32 H 1.08999 * 109.46744 * 178.21740 * 1 2 3 33 33 H 1.08995 * 109.47196 * 181.78339 * 3 2 1 34 34 H 1.09007 * 109.46950 * 301.78130 * 3 2 1 35 35 H 1.08999 * 109.47295 * 61.78162 * 3 2 1 36 36 H 1.08995 * 109.88611 * 21.14651 * 4 2 1 37 37 H 1.09002 * 109.88497 * 259.97152 * 4 2 1 38 38 H 1.08995 * 109.46686 * 60.00602 * 8 6 5 39 39 H 1.09002 * 109.47369 * 300.00929 * 8 6 5 40 40 H 1.08996 * 109.46982 * 59.99943 * 9 8 6 41 41 H 1.09004 * 109.46683 * 299.99893 * 9 8 6 42 42 H 1.09005 * 109.47084 * 60.00528 * 11 10 9 43 43 H 1.08997 * 109.47384 * 300.00218 * 11 10 9 44 44 H 1.08997 * 111.12470 * 273.31972 * 14 12 11 45 45 H 1.08995 * 111.12619 * 37.48960 * 14 12 11 46 46 H 1.08998 * 110.85543 * 207.67443 * 15 14 12 47 47 H 1.09009 * 111.02412 * 84.13543 * 15 14 12 48 48 H 1.08999 * 109.83271 * 261.84174 * 16 15 14 49 49 H 1.08999 * 109.91049 * 140.90833 * 16 15 14 50 50 H 1.09000 * 110.36665 * 94.47918 * 18 5 4 51 51 H 1.08998 * 110.36740 * 216.80334 * 18 5 4 52 52 H 0.97003 * 119.99368 * 87.20670 * 21 19 18 53 53 H 0.97006 * 119.99814 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0759 -0.7911 1.2074 5 7 3.2444 -1.5507 0.7392 6 6 3.9923 -2.3835 1.4901 7 8 3.7192 -2.5561 2.6590 8 6 5.1678 -3.1000 0.8771 9 6 5.8399 -3.9761 1.9362 10 8 6.9549 -4.6552 1.3551 11 6 7.6568 -5.5044 2.2651 12 6 8.8236 -6.1766 1.5386 13 1 9.4566 -5.4260 1.0652 14 6 9.6533 -7.0338 2.5273 15 6 10.2954 -8.0633 1.5578 16 6 9.1872 -8.2525 0.4998 17 8 8.3324 -7.1047 0.5583 18 6 3.4666 -1.2456 -0.6859 19 6 2.0790 -0.7956 -1.2137 20 1 2.1850 -0.1520 -2.0869 21 7 1.2267 -1.9484 -1.5149 22 6 1.2020 -2.4693 -2.7810 23 1 1.8105 -2.0301 -3.5576 24 6 0.3947 -3.5620 -3.0662 25 7 -0.3465 -4.0976 -2.1196 26 14 0.3604 -4.2722 -4.7936 27 1 1.2761 -3.4948 -5.6668 28 1 0.7984 -5.6907 -4.7545 29 1 -1.0210 -4.1955 -5.3330 30 1 -0.3634 0.4858 0.9055 31 1 -0.3633 0.5412 -0.8736 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4057 -0.0320 34 1 1.6956 1.9622 -0.8736 35 1 1.7474 1.9426 0.9055 36 1 1.3129 -1.4758 1.5777 37 1 2.3740 -0.1023 1.9978 38 1 5.8839 -2.3687 0.5024 39 1 4.8230 -3.7257 0.0539 40 1 5.1236 -4.7074 2.3106 41 1 6.1847 -3.3506 2.7596 42 1 6.9785 -6.2678 2.6464 43 1 8.0390 -4.9105 3.0953 44 1 10.4155 -6.4334 3.0238 45 1 9.0095 -7.5280 3.2548 46 1 10.5055 -9.0014 2.0715 47 1 11.2008 -7.6606 1.1035 48 1 8.6137 -9.1524 0.7219 49 1 9.6312 -8.3327 -0.4924 50 1 4.1948 -0.4415 -0.7927 51 1 3.8032 -2.1362 -1.2166 52 1 0.6799 -2.3426 -0.8173 53 1 -0.9109 -4.8609 -2.3191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734498555.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -142.416816 kcal Electronic energy + Delta-G solvation = -30423.024621 eV Core-core repulsion = 26293.886706 eV Total energy + Delta-G solvation = -4129.137915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39141 -40.52279 -39.52756 -38.52053 -35.69720 -34.67427 -33.33078 -32.92778 -32.56466 -31.15714 -29.50854 -27.95588 -27.70670 -26.28904 -25.69184 -24.24632 -22.99881 -22.55814 -22.22483 -20.35181 -19.93019 -19.08072 -18.39162 -18.05443 -17.53446 -17.13459 -16.97304 -16.91473 -16.39027 -15.99424 -15.89535 -15.63473 -15.38415 -15.08604 -14.84012 -14.65942 -14.37478 -14.19367 -13.72607 -13.67542 -13.54942 -13.43462 -13.24688 -12.98605 -12.83858 -12.76908 -12.68889 -12.62555 -12.50420 -12.32072 -12.17074 -12.12358 -12.10761 -12.01808 -11.79157 -11.69953 -11.45300 -11.28849 -11.01653 -10.89392 -10.68536 -10.49825 -9.67801 -8.94926 -7.92165 -5.19981 1.48349 1.49598 1.54350 1.58574 1.88013 2.57292 2.64158 2.85815 3.39248 3.42115 3.53946 3.74013 3.80298 3.85222 3.87996 3.95964 3.96759 4.08576 4.10980 4.12511 4.28499 4.34848 4.36720 4.42182 4.48136 4.49217 4.54212 4.63067 4.70956 4.74648 4.76296 4.80337 4.81145 4.87690 4.91365 4.92963 4.96166 4.99953 5.03166 5.11009 5.14472 5.22473 5.33245 5.35228 5.44934 5.55340 5.63424 6.03425 6.18648 6.28881 6.53318 7.08007 7.36142 8.11457 8.33521 9.31362 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.002678 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.556326 B =10454.494317 C =12771.148005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.124 4.124 4 C 0.121 3.879 5 N -0.603 5.603 6 C 0.527 3.473 7 O -0.591 6.591 8 C -0.125 4.125 9 C 0.088 3.912 10 O -0.400 6.400 11 C 0.058 3.942 12 C 0.076 3.924 13 H 0.079 0.921 14 C -0.142 4.142 15 C -0.147 4.147 16 C 0.035 3.965 17 O -0.410 6.410 18 C 0.074 3.926 19 C 0.165 3.835 20 H 0.087 0.913 21 N -0.721 5.721 22 C -0.230 4.230 23 H 0.085 0.915 24 C -0.076 4.076 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.260 1.260 28 H -0.302 1.302 29 H -0.298 1.298 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.064 0.936 52 H 0.372 0.628 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.094 3.089 9.083 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.181 4.181 4 C -0.002 4.002 5 N -0.334 5.334 6 C 0.317 3.683 7 O -0.473 6.473 8 C -0.165 4.165 9 C 0.011 3.989 10 O -0.320 6.320 11 C -0.019 4.019 12 C 0.019 3.981 13 H 0.097 0.903 14 C -0.180 4.180 15 C -0.184 4.184 16 C -0.041 4.041 17 O -0.330 6.330 18 C -0.051 4.051 19 C 0.055 3.945 20 H 0.105 0.895 21 N -0.359 5.359 22 C -0.362 4.362 23 H 0.102 0.898 24 C -0.268 4.268 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.184 1.184 28 H -0.230 1.230 29 H -0.225 1.225 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.103 0.897 46 H 0.120 0.880 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.116 0.884 51 H 0.083 0.917 52 H 0.205 0.795 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.898 2.986 9.196 23.026 hybrid contribution -0.852 -1.324 -0.367 1.617 sum 20.046 1.662 8.829 21.967 Atomic orbital electron populations 1.21563 0.93547 1.01037 1.01760 1.21896 0.96178 0.96474 0.93372 1.21719 1.01231 0.92116 1.03049 1.22032 0.86968 0.93892 0.97279 1.48404 1.29186 1.43487 1.12345 1.20397 0.83970 0.78429 0.85472 1.90637 1.72907 1.65592 1.18169 1.21345 0.95477 1.00027 0.99632 1.21974 0.87627 0.94493 0.94786 1.87842 1.43969 1.61573 1.38582 1.22881 0.93648 0.92981 0.92365 1.23177 0.93664 0.91998 0.89289 0.90332 1.23258 0.99682 0.97373 0.97644 1.23113 0.98240 1.01035 0.96018 1.23355 0.91957 0.88567 1.00222 1.88525 1.52441 1.31552 1.60492 1.23434 1.00840 1.01280 0.79520 1.21716 0.88516 0.88499 0.95768 0.89540 1.42549 1.50249 1.34075 1.09052 1.19693 1.19272 1.08718 0.88533 0.89755 1.25498 1.00368 1.00077 1.00862 1.69837 1.32402 1.26363 1.33546 0.85165 0.76989 0.77596 0.80578 1.18424 1.23029 1.22517 0.91447 0.92214 0.94897 0.91583 0.91161 0.91165 0.94506 0.90553 0.85922 0.88982 0.94281 0.91617 0.93241 0.89440 0.87181 0.89705 0.88009 0.89260 0.91229 0.91079 0.88370 0.91739 0.79510 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 8.16 71.98 0.59 -3.25 16 2 C -0.08 -2.27 0.80 -50.99 -0.04 -2.31 16 3 C -0.12 -2.58 8.44 71.98 0.61 -1.98 16 4 C 0.12 3.97 6.04 86.73 0.52 4.49 16 5 N -0.60 -20.51 3.33 -811.34 -2.70 -23.20 16 6 C 0.53 18.91 7.85 87.66 0.69 19.60 16 7 O -0.59 -24.59 16.31 -3.02 -0.05 -24.64 16 8 C -0.13 -3.78 5.07 29.85 0.15 -3.62 16 9 C 0.09 2.58 5.23 71.98 0.38 2.95 16 10 O -0.40 -11.58 10.34 -148.28 -1.53 -13.12 16 11 C 0.06 1.27 5.65 71.98 0.41 1.68 16 12 C 0.08 1.50 3.72 31.26 0.12 1.62 16 13 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 14 C -0.14 -1.66 6.57 32.05 0.21 -1.45 16 15 C -0.15 -1.56 7.02 31.85 0.22 -1.33 16 16 C 0.04 0.61 7.79 72.45 0.56 1.18 16 17 O -0.41 -10.75 11.04 -148.28 -1.64 -12.39 16 18 C 0.07 2.32 6.09 86.93 0.53 2.85 16 19 C 0.17 5.77 2.96 46.46 0.14 5.91 16 20 H 0.09 2.84 7.99 -2.39 -0.02 2.82 16 21 N -0.72 -34.01 4.57 -316.02 -1.44 -35.45 16 22 C -0.23 -12.06 9.96 84.04 0.84 -11.23 16 23 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 26 Si 0.97 45.85 29.55 68.60 2.03 47.87 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 28 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 29 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.03 1.30 6.34 -2.39 -0.02 1.28 16 33 H 0.07 1.25 7.42 -2.39 -0.02 1.23 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 37 H 0.08 2.24 7.84 -2.39 -0.02 2.22 16 38 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.09 3.05 7.85 -2.39 -0.02 3.03 16 40 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 41 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 42 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 46 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.10 2.33 7.69 -2.39 -0.02 2.31 16 51 H 0.06 2.26 7.48 -2.39 -0.02 2.24 16 52 H 0.37 19.79 6.32 -92.71 -0.59 19.21 16 53 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -73.20 419.37 1.62 -71.58 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.29 Total: 37.37 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.39 Total: 11.29 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -3.86 Total: -117.97 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -3.22 Total: -50.14 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.20 1.62 -71.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734498555.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.839 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds