Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47014 * 270.00628 * 3 2 1 5 5 H 1.48501 * 109.46470 * 30.00146 * 3 2 1 6 6 H 1.48495 * 109.47123 * 149.99682 * 3 2 1 7 7 C 1.38811 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00196 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00305 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47107 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47122 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.49381 * 55.06484 * 12 11 10 14 14 C 1.53045 * 109.52594 * 175.14198 * 12 11 10 15 15 C 1.53038 * 109.53725 * 181.33385 * 14 12 11 16 16 C 1.53622 * 109.24267 * 298.51548 * 15 14 12 17 17 N 1.46921 * 108.54555 * 54.85703 * 16 15 14 18 18 C 1.34774 * 120.63129 * 126.37007 * 17 16 15 19 19 O 1.21285 * 119.99758 * 179.71871 * 18 17 16 20 20 C 1.50701 * 120.00070 * 359.71638 * 18 17 16 21 21 O 1.42898 * 109.47299 * 179.97438 * 20 18 17 22 22 C 1.42896 * 114.00047 * 180.02562 * 21 20 18 23 23 C 1.53005 * 109.47091 * 180.02562 * 22 21 20 24 24 H 1.09002 * 110.33140 * 305.69926 * 23 22 21 25 25 C 1.54481 * 110.37412 * 183.45082 * 23 22 21 26 26 C 1.54503 * 104.06445 * 217.08080 * 25 23 22 27 27 C 1.54482 * 104.06349 * 359.97438 * 26 25 23 28 28 O 1.44428 * 110.46595 * 68.01282 * 23 22 21 29 29 C 1.46933 * 118.73932 * 306.09287 * 17 16 15 30 30 H 0.96996 * 120.00210 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00372 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47168 * 59.99931 * 10 9 7 33 33 H 1.09001 * 109.46887 * 299.99774 * 10 9 7 34 34 H 1.08996 * 109.47596 * 59.99818 * 11 10 9 35 35 H 1.09001 * 109.47027 * 299.99645 * 11 10 9 36 36 H 1.08997 * 109.45882 * 301.35970 * 14 12 11 37 37 H 1.08996 * 109.45434 * 61.31151 * 14 12 11 38 38 H 1.09000 * 109.49774 * 58.59162 * 15 14 12 39 39 H 1.08997 * 109.49691 * 178.64917 * 15 14 12 40 40 H 1.09000 * 109.73953 * 295.11674 * 16 15 14 41 41 H 1.09003 * 109.66196 * 174.55388 * 16 15 14 42 42 H 1.09007 * 109.46723 * 60.00555 * 20 18 17 43 43 H 1.08990 * 109.47379 * 300.00640 * 20 18 17 44 44 H 1.08997 * 109.47176 * 60.00349 * 22 21 20 45 45 H 1.09002 * 109.47048 * 299.99917 * 22 21 20 46 46 H 1.09007 * 110.50806 * 335.72406 * 25 23 22 47 47 H 1.08993 * 110.51288 * 98.42843 * 25 23 22 48 48 H 1.08994 * 110.51469 * 118.64075 * 26 25 23 49 49 H 1.09004 * 110.51074 * 241.35380 * 26 25 23 50 50 H 1.09000 * 110.37168 * 142.80761 * 27 26 25 51 51 H 1.08995 * 110.37315 * 265.15262 * 27 26 25 52 52 H 1.08992 * 109.58842 * 173.64454 * 29 17 16 53 53 H 1.09001 * 109.58605 * 293.93371 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2022 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8290 -6.1447 -0.0018 13 1 2.5204 -6.1660 0.8406 14 6 0.8400 -7.3064 0.1197 15 6 1.6071 -8.6303 0.1525 16 6 2.3880 -8.7956 -1.1601 17 7 3.2365 -7.6116 -1.3514 18 6 4.5606 -7.7431 -1.5658 19 8 5.2495 -6.7581 -1.7274 20 6 5.1851 -9.1141 -1.6048 21 8 6.5884 -8.9916 -1.8451 22 6 7.2796 -10.2410 -1.9017 23 6 8.7664 -9.9900 -2.1614 24 1 8.8970 -9.3786 -3.0543 25 6 9.5197 -11.3302 -2.3125 26 6 10.8831 -11.0733 -1.6325 27 6 10.7926 -9.6081 -1.1515 28 8 9.3774 -9.3499 -1.0199 29 6 2.6133 -6.2817 -1.3106 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6849 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8906 34 1 0.4376 -4.7618 -0.8913 35 1 0.4370 -4.7621 0.8886 36 1 0.2634 -7.1978 1.0383 37 1 0.1646 -7.2991 -0.7357 38 1 2.3006 -8.6281 0.9935 39 1 0.9038 -9.4556 0.2632 40 1 1.6917 -8.8848 -1.9939 41 1 3.0121 -9.6877 -1.1056 42 1 4.7296 -9.6982 -2.4045 43 1 5.0218 -9.6150 -0.6507 44 1 6.8672 -10.8483 -2.7074 45 1 7.1602 -10.7655 -0.9536 46 1 8.9829 -12.1298 -1.8018 47 1 9.6581 -11.5740 -3.3657 48 1 11.0203 -11.7457 -0.7857 49 1 11.6956 -11.1900 -2.3497 50 1 11.2899 -9.4934 -0.1884 51 1 11.2339 -8.9385 -1.8897 52 1 3.3861 -5.5144 -1.3554 53 1 1.9368 -6.1690 -2.1578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753562683.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -150.834053 kcal Electronic energy + Delta-G solvation = -29670.372840 eV Core-core repulsion = 25540.869926 eV Total energy + Delta-G solvation = -4129.502914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36484 -40.45678 -39.16222 -38.13570 -36.97568 -35.05947 -33.40880 -33.13534 -32.36575 -31.83059 -29.80610 -28.51693 -26.39992 -25.95323 -25.54853 -24.02623 -22.93998 -22.23956 -21.98674 -21.40361 -20.08782 -19.17906 -18.56619 -17.80636 -17.55501 -17.18450 -16.78354 -16.71228 -16.56664 -16.40853 -15.96773 -15.55172 -15.40209 -15.24446 -15.17499 -14.80183 -14.62111 -14.39207 -14.23686 -13.93460 -13.78157 -13.43924 -13.13753 -13.00792 -12.84973 -12.71688 -12.64786 -12.59276 -12.32995 -12.19334 -12.15980 -12.15470 -11.95910 -11.89834 -11.75252 -11.55677 -11.49187 -11.19806 -10.95677 -10.78902 -10.75335 -10.73051 -9.67272 -9.05089 -7.99941 -5.29290 1.43019 1.45572 1.52397 1.54417 1.68319 2.52198 2.75129 2.95158 3.32514 3.46521 3.64375 3.67490 3.83432 3.87007 3.91882 3.99325 4.02859 4.09993 4.13389 4.15052 4.24160 4.27648 4.32089 4.39981 4.42466 4.49784 4.50531 4.54658 4.57614 4.68203 4.71368 4.79839 4.86032 4.87564 4.87836 4.91568 4.94299 5.05405 5.07797 5.14429 5.16749 5.23864 5.31337 5.36947 5.43746 5.50044 5.52858 5.88107 6.08075 6.23097 6.40387 7.13693 7.28872 8.03471 8.29474 9.23305 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.002003 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.131765 B =13977.937719 C =16084.627570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.745 5.745 10 C 0.149 3.851 11 C -0.104 4.104 12 C -0.085 4.085 13 H 0.059 0.941 14 C -0.112 4.112 15 C -0.129 4.129 16 C 0.097 3.903 17 N -0.606 5.606 18 C 0.500 3.500 19 O -0.584 6.584 20 C 0.052 3.948 21 O -0.401 6.401 22 C 0.063 3.937 23 C 0.064 3.936 24 H 0.062 0.938 25 C -0.139 4.139 26 C -0.150 4.150 27 C 0.029 3.971 28 O -0.401 6.401 29 C 0.117 3.883 30 H 0.254 0.746 31 H 0.376 0.624 32 H 0.007 0.993 33 H 0.011 0.989 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.058 0.942 52 H 0.055 0.945 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.389 -36.861 -4.572 39.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.388 5.388 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.105 4.105 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.167 4.167 16 C -0.023 4.023 17 N -0.340 5.340 18 C 0.289 3.711 19 O -0.463 6.463 20 C -0.026 4.026 21 O -0.320 6.320 22 C -0.012 4.012 23 C 0.006 3.994 24 H 0.080 0.920 25 C -0.177 4.177 26 C -0.187 4.187 27 C -0.047 4.047 28 O -0.321 6.321 29 C -0.006 4.006 30 H 0.062 0.938 31 H 0.208 0.792 32 H 0.025 0.975 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.117 0.883 48 H 0.104 0.896 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.076 0.924 52 H 0.074 0.926 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.904 -35.976 -4.509 38.485 hybrid contribution 0.157 1.585 -0.013 1.593 sum 13.061 -34.390 -4.522 37.064 Atomic orbital electron populations 1.69804 1.06418 1.26247 1.59144 1.25588 0.96563 1.01074 1.03341 0.85121 0.77620 0.79309 0.77604 1.21172 1.21378 1.19883 1.19607 0.91287 0.85725 1.41888 0.91524 1.42551 1.05659 1.01154 1.89416 1.20849 0.94447 0.85676 0.96746 1.21595 0.97531 0.92515 1.02564 1.21341 0.97392 0.94974 0.96747 0.92225 1.21583 0.97045 0.93051 1.03285 1.21999 0.99707 0.98002 0.97014 1.22298 0.94536 0.86515 0.98993 1.48214 1.06678 1.08511 1.70636 1.21149 0.82088 0.91952 0.75933 1.90740 1.62529 1.42268 1.50804 1.22373 0.82680 0.92928 1.04659 1.88050 1.19212 1.31165 1.93577 1.22876 0.90194 0.85345 1.02818 1.23220 0.92459 0.94441 0.89279 0.91960 1.22918 0.95485 0.95919 1.03335 1.22945 0.98134 0.95876 1.01758 1.23637 0.82081 0.96557 1.02420 1.89236 1.20292 1.76968 1.45613 1.21596 0.96605 0.84248 0.98122 0.93764 0.79175 0.97515 0.97101 0.91401 0.91280 0.90902 0.90573 0.92010 0.87304 0.89026 0.86797 0.86409 0.87406 0.88351 0.91158 0.88856 0.88280 0.89633 0.88765 0.88559 0.92376 0.92620 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 2 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.98 48.90 29.55 68.60 2.03 50.92 16 4 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.25 -15.44 9.99 84.03 0.84 -14.60 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -41.36 5.60 -343.44 -1.92 -43.28 16 10 C 0.15 6.74 6.02 86.38 0.52 7.26 16 11 C -0.10 -3.46 4.80 30.60 0.15 -3.32 16 12 C -0.08 -2.23 2.34 -10.71 -0.03 -2.26 16 13 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.11 -1.95 5.17 30.62 0.16 -1.79 16 15 C -0.13 -1.46 6.10 30.82 0.19 -1.28 16 16 C 0.10 1.08 6.37 86.51 0.55 1.63 16 17 N -0.61 -13.74 2.97 -818.07 -2.43 -16.16 16 18 C 0.50 14.04 7.78 87.66 0.68 14.72 16 19 O -0.58 -24.31 15.91 15.99 0.25 -24.05 16 20 C 0.05 0.91 4.76 71.24 0.34 1.25 16 21 O -0.40 -9.92 9.88 -127.76 -1.26 -11.19 16 22 C 0.06 0.94 5.55 71.98 0.40 1.33 16 23 C 0.06 1.07 3.57 31.10 0.11 1.18 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 C -0.14 -1.16 6.63 31.61 0.21 -0.96 16 26 C -0.15 -1.30 7.09 31.61 0.22 -1.08 16 27 C 0.03 0.45 7.63 72.49 0.55 1.00 16 28 O -0.40 -9.51 11.35 -148.68 -1.69 -11.20 16 29 C 0.12 3.35 5.32 86.36 0.46 3.81 16 30 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.38 21.50 7.67 -92.71 -0.71 20.79 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.01 0.52 6.70 -2.39 -0.02 0.51 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.51 5.93 -2.39 -0.01 0.50 16 42 H 0.12 1.05 7.93 -2.38 -0.02 1.03 16 43 H 0.11 1.21 7.70 -2.39 -0.02 1.19 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 0.51 7.87 -2.38 -0.02 0.49 16 47 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 50 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.06 2.10 5.72 -2.39 -0.01 2.09 16 53 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -88.91 416.47 1.25 -87.65 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.17 Total: 25.41 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.82 Total: 2.93 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -4.07 Total: -120.48 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -2.69 Total: -46.44 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.92 kcal Total: -88.91 1.25 -87.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753562683.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.179 kcal (2) G-P(sol) polarization free energy of solvation -88.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds