Wall clock time and date at job start Sat Apr 11 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99711 * 2 1 4 4 C 1.52999 * 109.46926 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47314 * 64.99912 * 4 3 2 6 6 C 1.46762 * 124.34892 * 89.99754 * 5 4 3 7 7 C 1.54478 * 105.47220 * 196.99791 * 6 5 4 8 8 H 1.08998 * 110.97140 * 92.74013 * 7 6 5 9 9 C 1.50708 * 110.96777 * 216.46763 * 7 6 5 10 10 O 1.21277 * 120.00078 * 29.57707 * 9 7 6 11 11 N 1.34782 * 119.99932 * 209.57930 * 9 7 6 12 12 C 1.46491 * 119.99861 * 185.23547 * 11 9 7 13 13 C 1.50701 * 109.46852 * 85.49796 * 12 11 9 14 14 H 1.08003 * 120.00084 * 355.15578 * 13 12 11 15 15 C 1.37884 * 120.00437 * 175.16089 * 13 12 11 16 16 N 1.31519 * 119.99380 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00270 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46787 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46907 * 299.99456 * 17 15 13 20 20 H 1.48499 * 109.46924 * 59.99950 * 17 15 13 21 21 C 1.46500 * 119.99741 * 5.24237 * 11 9 7 22 22 C 1.52991 * 109.47449 * 94.19505 * 21 11 9 23 23 C 1.52999 * 109.47147 * 65.53256 * 22 21 11 24 24 C 1.53003 * 109.47187 * 185.53156 * 22 21 11 25 25 C 1.52997 * 109.47026 * 305.53413 * 22 21 11 26 26 C 1.54629 * 101.80214 * 334.60073 * 7 6 5 27 27 C 1.34421 * 124.34988 * 269.97477 * 5 4 3 28 28 O 1.21280 * 124.94393 * 359.64222 * 27 5 4 29 29 H 1.09007 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47395 * 299.99944 * 1 2 3 31 31 H 1.08999 * 109.47214 * 60.00273 * 1 2 3 32 32 H 1.09001 * 109.46949 * 60.00161 * 3 2 1 33 33 H 1.08992 * 109.46657 * 299.99754 * 3 2 1 34 34 H 1.09008 * 109.47165 * 304.99660 * 4 3 2 35 35 H 1.08994 * 109.46800 * 185.00061 * 4 3 2 36 36 H 1.08993 * 110.24372 * 77.99775 * 6 5 4 37 37 H 1.08996 * 110.24448 * 315.99623 * 6 5 4 38 38 H 1.08998 * 109.47854 * 325.49844 * 12 11 9 39 39 H 1.08998 * 109.47286 * 205.49051 * 12 11 9 40 40 H 0.96996 * 119.99908 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.46871 * 214.19443 * 21 11 9 42 42 H 1.09001 * 109.47269 * 334.19006 * 21 11 9 43 43 H 1.09005 * 109.46919 * 47.92951 * 23 22 21 44 44 H 1.09009 * 109.47061 * 167.92763 * 23 22 21 45 45 H 1.08997 * 109.47504 * 287.92849 * 23 22 21 46 46 H 1.09005 * 109.46757 * 60.00496 * 24 22 21 47 47 H 1.09000 * 109.46900 * 179.97438 * 24 22 21 48 48 H 1.08989 * 109.47511 * 300.00169 * 24 22 21 49 49 H 1.09000 * 109.47568 * 58.46453 * 25 22 21 50 50 H 1.09004 * 109.47232 * 178.46418 * 25 22 21 51 51 H 1.08999 * 109.47148 * 298.45722 * 25 22 21 52 52 H 1.08993 * 110.49015 * 143.45820 * 26 7 6 53 53 H 1.08998 * 110.49058 * 266.10546 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 4.3130 1.3079 -2.4705 7 6 4.2900 0.2642 -3.6092 8 1 3.3097 0.2265 -4.0841 9 6 5.3673 0.5493 -4.6238 10 8 6.3954 1.0931 -4.2802 11 7 5.1880 0.2000 -5.9132 12 6 6.2779 0.3719 -6.8769 13 6 7.1790 -0.8354 -6.8366 14 1 7.0073 -1.6133 -6.1073 15 6 8.2226 -0.9470 -7.7308 16 7 8.4314 0.0001 -8.6191 17 14 9.3400 -2.4431 -7.6803 18 1 10.3758 -2.3230 -8.7377 19 1 9.9963 -2.5261 -6.3509 20 1 8.5357 -3.6695 -7.9129 21 6 3.9033 -0.3513 -6.3509 22 6 3.0238 0.7756 -6.8960 23 6 3.6581 1.3494 -8.1646 24 6 1.6346 0.2248 -7.2246 25 6 2.8990 1.8795 -5.8440 26 6 4.5845 -1.0463 -2.8430 27 6 4.1260 -0.7598 -1.4294 28 8 3.9219 -1.6025 -0.5815 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.8508 0.5687 0.8428 35 1 3.9783 2.1766 0.0902 36 1 5.3062 1.7479 -2.3821 37 1 3.5707 2.0843 -2.6555 38 1 6.8520 1.2624 -6.6213 39 1 5.8630 0.4822 -7.8788 40 1 9.1658 -0.0781 -9.2479 41 1 4.0730 -1.0908 -7.1336 42 1 3.4043 -0.8252 -5.5055 43 1 3.9434 0.5337 -8.8290 44 1 2.9398 1.9952 -8.6698 45 1 4.5427 1.9279 -7.8988 46 1 1.1827 -0.1839 -6.3208 47 1 1.0079 1.0279 -7.6126 48 1 1.7234 -0.5615 -7.9740 49 1 3.8910 2.2530 -5.5899 50 1 2.2949 2.6946 -6.2425 51 1 2.4222 1.4773 -4.9502 52 1 4.0163 -1.8731 -3.2689 53 1 5.6518 -1.2668 -2.8603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104627154.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:06 Heat of formation + Delta-G solvation = -138.574241 kcal Electronic energy + Delta-G solvation = -32315.176185 eV Core-core repulsion = 28186.204896 eV Total energy + Delta-G solvation = -4128.971289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.00240 -40.55998 -38.69825 -38.43216 -37.24478 -35.64031 -34.48757 -34.10308 -30.68844 -29.55704 -28.81322 -28.04089 -27.95919 -27.16555 -26.90734 -25.49812 -23.95170 -23.06928 -20.59738 -20.45910 -19.30868 -18.64061 -18.53035 -17.92244 -17.43650 -17.18333 -16.68667 -16.48855 -16.29878 -16.18943 -16.00971 -15.44213 -15.13553 -14.98069 -14.74477 -14.61650 -14.50742 -14.23797 -14.03655 -13.88760 -13.58576 -13.54623 -13.12915 -13.01911 -12.97162 -12.83549 -12.68721 -12.59833 -12.50265 -12.47683 -12.41401 -12.19050 -12.12898 -12.03816 -11.92203 -11.65958 -11.51114 -11.33532 -10.99597 -10.58901 -10.55815 -10.49275 -9.71378 -9.33302 -8.19522 -6.32638 1.37094 1.40099 1.46892 1.53501 1.73067 1.96721 2.31262 2.44524 2.95260 3.10310 3.23405 3.46515 3.65675 3.82951 3.90342 3.94703 4.10450 4.10934 4.16653 4.19801 4.39886 4.44369 4.49770 4.53904 4.56976 4.58863 4.61610 4.64165 4.74902 4.81946 4.85528 4.87210 4.88618 4.91418 4.97528 5.01190 5.12345 5.15628 5.18419 5.26989 5.30202 5.42604 5.49959 5.54971 5.58452 5.64411 5.90600 6.05218 6.12668 6.34190 6.74054 6.82928 7.15891 7.30738 7.49098 8.86407 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.003590 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.641809 B = 7797.247038 C = 9126.176123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.041 3.959 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.121 3.879 7 C -0.115 4.115 8 H 0.141 0.859 9 C 0.519 3.481 10 O -0.589 6.589 11 N -0.588 5.588 12 C 0.264 3.736 13 C -0.543 4.543 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.957 3.043 18 H -0.279 1.279 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.110 3.890 22 C -0.083 4.083 23 C -0.137 4.137 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.139 4.139 27 C 0.525 3.475 28 O -0.561 6.561 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.115 0.885 38 H -0.009 1.009 39 H 0.041 0.959 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.030 0.970 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.031 0.969 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.122 0.878 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.905 5.219 10.700 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.036 4.036 4 C -0.001 4.001 5 N -0.342 5.342 6 C -0.002 4.002 7 C -0.136 4.136 8 H 0.158 0.842 9 C 0.307 3.693 10 O -0.470 6.470 11 N -0.317 5.317 12 C 0.143 3.857 13 C -0.581 4.581 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.013 4.013 22 C -0.084 4.084 23 C -0.194 4.194 24 C -0.189 4.189 25 C -0.198 4.198 26 C -0.180 4.180 27 C 0.313 3.687 28 O -0.439 6.439 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.009 0.991 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.050 0.950 50 H 0.088 0.912 51 H 0.094 0.906 52 H 0.140 0.860 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.275 4.995 11.211 23.701 hybrid contribution 1.288 -0.479 -0.447 1.445 sum -18.988 4.516 10.764 22.289 Atomic orbital electron populations 1.22837 0.80036 1.03032 1.00849 1.88042 1.20960 1.28642 1.95566 1.23117 0.93237 0.84998 1.02239 1.21702 0.93407 1.00306 0.84654 1.48213 1.66058 1.06476 1.13434 1.22036 1.02957 0.93917 0.81253 1.22390 1.00258 0.96269 0.94721 0.84173 1.20434 0.87607 0.78049 0.83255 1.90652 1.31414 1.45031 1.79882 1.48056 1.14355 1.61029 1.08252 1.18820 0.84462 0.94593 0.87862 1.21744 1.13844 1.06176 1.16369 0.93247 1.25715 0.98706 0.99294 0.94906 1.70022 1.31677 1.34727 1.20080 0.85624 0.78643 0.79975 0.77531 1.20433 1.20603 1.18740 1.21946 0.82619 0.95818 1.00917 1.20976 0.96147 0.95645 0.95628 1.21905 0.99854 1.00442 0.97198 1.21768 0.93443 1.01307 1.02345 1.21989 1.00858 0.98311 0.98675 1.22263 1.03897 0.98734 0.93082 1.20774 0.75649 0.82784 0.89483 1.90681 1.52969 1.50445 1.49828 0.90063 0.92876 0.93081 0.90040 0.91564 0.90876 0.85513 0.90844 0.86690 0.99138 0.94063 0.92515 0.91233 0.88323 0.93911 0.91325 0.95120 0.90883 0.91261 0.92559 0.95007 0.91179 0.90552 0.85992 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.12 10.27 -148.98 -1.53 -10.65 16 3 C 0.04 0.62 6.28 71.98 0.45 1.07 16 4 C 0.12 2.16 6.33 86.38 0.55 2.71 16 5 N -0.61 -14.48 2.90 -817.93 -2.37 -16.85 16 6 C 0.12 2.75 6.87 86.83 0.60 3.34 16 7 C -0.12 -3.00 2.10 -10.48 -0.02 -3.03 16 8 H 0.14 2.79 3.93 -2.39 -0.01 2.78 16 9 C 0.52 19.60 5.04 87.66 0.44 20.05 16 10 O -0.59 -28.25 15.40 -3.02 -0.05 -28.29 16 11 N -0.59 -22.91 1.97 -826.17 -1.63 -24.53 16 12 C 0.26 13.50 4.25 85.64 0.36 13.86 16 13 C -0.54 -30.63 9.35 25.60 0.24 -30.39 16 14 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 15 C 0.01 0.74 5.46 84.66 0.46 1.20 16 16 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 17 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.11 3.13 4.43 86.38 0.38 3.52 16 22 C -0.08 -1.92 0.85 -52.18 -0.04 -1.96 16 23 C -0.14 -3.90 7.09 71.98 0.51 -3.39 16 24 C -0.13 -2.12 8.44 71.98 0.61 -1.52 16 25 C -0.14 -2.91 7.08 71.98 0.51 -2.40 16 26 C -0.14 -3.98 6.41 30.61 0.20 -3.78 16 27 C 0.53 16.00 7.73 87.92 0.68 16.68 16 28 O -0.56 -21.15 17.49 -3.03 -0.05 -21.20 16 29 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.60 7.92 -2.38 -0.02 1.58 16 35 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 2.03 6.95 -2.39 -0.02 2.01 16 37 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 38 H -0.01 -0.57 7.49 -2.39 -0.02 -0.58 16 39 H 0.04 2.14 5.67 -2.39 -0.01 2.12 16 40 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.07 2.19 8.05 -2.38 -0.02 2.17 16 42 H 0.10 2.20 5.99 -2.39 -0.01 2.18 16 43 H 0.04 1.34 7.72 -2.38 -0.02 1.32 16 44 H 0.07 1.60 8.09 -2.38 -0.02 1.58 16 45 H 0.03 1.07 6.65 -2.39 -0.02 1.05 16 46 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.03 0.85 6.37 -2.39 -0.02 0.84 16 50 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 51 H 0.08 1.18 6.22 -2.39 -0.01 1.16 16 52 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 53 H 0.09 2.95 7.89 -2.39 -0.02 2.94 16 Total: -1.00 -79.71 413.68 4.74 -74.97 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.88 Total: 16.65 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.17 Total: 17.62 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -3.71 Total: -96.00 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -1.63 Total: -60.14 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -79.71 4.74 -74.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104627154.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.604 kcal (2) G-P(sol) polarization free energy of solvation -79.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds