Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 117.00262 * 2 1 4 4 O 1.20827 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00088 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46887 * 60.00086 * 5 3 2 7 7 C 1.52998 * 109.46906 * 300.00029 * 5 3 2 8 8 C 1.53007 * 109.46819 * 176.59167 * 7 5 3 9 9 C 1.53001 * 109.47049 * 175.20247 * 8 7 5 10 10 C 1.53005 * 109.46618 * 295.19660 * 8 7 5 11 11 N 1.46503 * 109.47030 * 180.02562 * 5 3 2 12 12 C 1.34776 * 120.00072 * 274.99905 * 11 5 3 13 13 O 1.21290 * 119.99744 * 0.02562 * 12 11 5 14 14 C 1.50697 * 120.00553 * 180.02562 * 12 11 5 15 15 N 1.46494 * 109.47459 * 179.97438 * 14 12 11 16 16 C 1.36935 * 120.00501 * 269.99697 * 15 14 12 17 17 H 1.07997 * 120.00030 * 189.82349 * 16 15 14 18 18 C 1.38815 * 119.99609 * 9.83031 * 16 15 14 19 19 N 1.31619 * 119.99863 * 25.84997 * 18 16 15 20 20 Si 1.86794 * 119.99937 * 205.85175 * 18 16 15 21 21 H 1.48504 * 109.47199 * 89.99841 * 20 18 16 22 22 H 1.48496 * 109.47392 * 210.00037 * 20 18 16 23 23 H 1.48504 * 109.47169 * 330.00160 * 20 18 16 24 24 C 1.46506 * 119.99651 * 90.00245 * 15 14 12 25 25 C 1.54266 * 110.03251 * 116.29456 * 24 15 14 26 26 C 1.54966 * 104.16202 * 95.75438 * 25 24 15 27 27 C 1.54890 * 102.77573 * 37.88495 * 26 25 24 28 28 C 1.53873 * 110.02852 * 233.51218 * 24 15 14 29 29 H 1.09005 * 109.46590 * 300.00315 * 1 2 3 30 30 H 1.09004 * 109.46874 * 59.99653 * 1 2 3 31 31 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47332 * 296.58574 * 7 5 3 33 33 H 1.08992 * 109.47317 * 56.58872 * 7 5 3 34 34 H 1.08994 * 109.47383 * 55.19418 * 8 7 5 35 35 H 1.08994 * 109.47318 * 64.04460 * 9 8 7 36 36 H 1.08997 * 109.47187 * 184.05224 * 9 8 7 37 37 H 1.09005 * 109.46669 * 304.04892 * 9 8 7 38 38 H 1.08994 * 109.47053 * 60.00518 * 10 8 7 39 39 H 1.09007 * 109.46594 * 180.02562 * 10 8 7 40 40 H 1.09002 * 109.47350 * 299.99915 * 10 8 7 41 41 H 0.97000 * 120.00056 * 95.00511 * 11 5 3 42 42 H 1.08999 * 109.46918 * 59.99637 * 14 12 11 43 43 H 1.09000 * 109.46917 * 300.00267 * 14 12 11 44 44 H 0.97001 * 119.99813 * 185.01338 * 19 18 16 45 45 H 1.09004 * 110.02025 * 354.90016 * 24 15 14 46 46 H 1.09006 * 110.48308 * 214.39943 * 25 24 15 47 47 H 1.08999 * 110.48714 * 337.03719 * 25 24 15 48 48 H 1.08996 * 110.71574 * 279.57542 * 26 25 24 49 49 H 1.08991 * 110.92385 * 156.29527 * 26 25 24 50 50 H 1.09001 * 110.48389 * 203.40848 * 27 26 25 51 51 H 1.08996 * 110.59954 * 80.82272 * 27 26 25 52 52 H 1.08994 * 110.03510 * 359.94704 * 28 24 15 53 53 H 1.09000 * 110.03321 * 121.38696 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1129 0.5814 1.2502 8 6 5.6424 0.5867 1.2086 9 6 6.1900 0.0015 2.5119 10 6 6.1233 -0.2593 0.0280 11 7 3.9818 2.6796 0.0011 12 6 4.0758 3.3550 -1.1615 13 8 3.8160 2.7998 -2.2080 14 6 4.5037 4.8000 -1.1611 15 7 4.5277 5.3025 -2.5370 16 6 5.6717 5.2021 -3.2828 17 1 5.7428 5.7096 -4.2335 18 6 6.7399 4.4480 -2.8169 19 7 6.5285 3.4541 -1.9802 20 14 8.4773 4.8436 -3.3773 21 1 9.0863 5.8264 -2.4454 22 1 9.2898 3.6007 -3.3861 23 1 8.4372 5.4185 -4.7460 24 6 3.3277 5.9127 -3.1149 25 6 3.5944 7.3966 -3.4416 26 6 3.9826 7.3907 -4.9418 27 6 3.0395 6.3149 -5.5354 28 6 2.9754 5.2250 -4.4456 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.7718 1.1124 2.1389 33 1 3.7538 -0.4472 1.2814 34 1 5.9991 1.6099 1.0915 35 1 5.8928 -1.0439 2.5939 36 1 7.2777 0.0713 2.5127 37 1 5.7894 0.5605 3.3577 38 1 5.7332 0.1575 -0.9005 39 1 7.2130 -0.2559 -0.0014 40 1 5.7666 -1.2826 0.1450 41 1 4.1893 3.1238 0.8381 42 1 5.4998 4.8838 -0.7266 43 1 3.7996 5.3872 -0.5716 44 1 7.2796 2.9738 -1.5981 45 1 2.4934 5.8278 -2.4185 46 1 2.6937 7.9899 -3.2831 47 1 4.4157 7.7790 -2.8356 48 1 5.0260 7.1024 -5.0690 49 1 3.7939 8.3632 -5.3965 50 1 3.4564 5.9088 -6.4571 51 1 2.0488 6.7315 -5.7171 52 1 3.6978 4.4379 -4.6618 53 1 1.9703 4.8063 -4.3949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151127545.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -126.159509 kcal Electronic energy + Delta-G solvation = -32639.582630 eV Core-core repulsion = 28511.149684 eV Total energy + Delta-G solvation = -4128.432945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.73854 -40.17405 -39.16799 -37.78705 -37.42637 -35.66708 -34.61006 -32.74069 -31.24886 -29.33285 -28.91827 -28.42278 -27.99148 -27.96218 -25.44969 -24.33765 -22.07408 -21.41499 -21.11480 -20.75689 -20.70590 -18.74812 -18.44964 -17.85684 -17.66140 -17.22598 -17.12618 -16.41639 -16.15528 -15.90466 -15.78104 -15.29114 -15.01742 -14.81306 -14.58672 -14.34355 -14.26442 -14.19066 -13.88997 -13.52433 -13.28433 -13.14815 -12.99166 -12.92020 -12.79829 -12.53252 -12.50772 -12.36630 -12.11888 -12.04530 -11.93933 -11.81783 -11.81515 -11.73387 -11.55030 -11.51487 -11.46100 -11.36699 -11.33188 -11.10514 -10.56870 -10.13720 -9.79629 -8.72173 -7.72401 -4.98800 1.14664 1.50353 1.53851 1.59014 1.62361 2.48785 2.58733 2.84960 3.39371 3.59442 3.64139 3.85504 3.96174 4.01046 4.03175 4.15124 4.28282 4.28625 4.29353 4.32272 4.46683 4.62698 4.65179 4.67348 4.75286 4.79079 4.81510 4.86978 4.88870 4.93893 4.96887 5.00629 5.05525 5.10312 5.15860 5.19474 5.25049 5.27921 5.28580 5.29998 5.40161 5.48288 5.52491 5.59711 5.61995 5.74913 5.80491 5.94128 6.41193 6.72530 6.99685 7.27945 7.92928 8.11014 8.42081 9.33598 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.004637 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.964411 B = 6037.158850 C = 8129.460361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.449 3.551 4 O -0.532 6.532 5 C 0.164 3.836 6 H 0.095 0.905 7 C -0.100 4.100 8 C -0.088 4.088 9 C -0.138 4.138 10 C -0.142 4.142 11 N -0.714 5.714 12 C 0.541 3.459 13 O -0.573 6.573 14 C 0.162 3.838 15 N -0.575 5.575 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.049 4.049 19 N -0.903 5.903 20 Si 0.943 3.057 21 H -0.287 1.287 22 H -0.309 1.309 23 H -0.283 1.283 24 C 0.165 3.835 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.405 0.595 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.242 0.758 45 H 0.046 0.954 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.080 0.920 50 H 0.053 0.947 51 H 0.078 0.922 52 H 0.036 0.964 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 -4.316 9.614 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.291 3.709 4 O -0.421 6.421 5 C 0.056 3.944 6 H 0.113 0.887 7 C -0.138 4.138 8 C -0.107 4.107 9 C -0.195 4.195 10 C -0.199 4.199 11 N -0.370 5.370 12 C 0.329 3.671 13 O -0.450 6.450 14 C 0.032 3.968 15 N -0.294 5.294 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.244 4.244 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.215 1.215 22 H -0.237 1.237 23 H -0.209 1.209 24 C 0.058 3.942 25 C -0.161 4.161 26 C -0.153 4.153 27 C -0.150 4.150 28 C -0.164 4.164 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.155 0.845 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.240 0.760 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.098 0.902 50 H 0.072 0.928 51 H 0.097 0.903 52 H 0.055 0.945 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.623 -4.531 8.819 12.506 hybrid contribution 0.966 -0.052 -0.333 1.023 sum -6.657 -4.583 8.485 11.718 Atomic orbital electron populations 1.23528 0.75180 1.05721 1.02087 1.86500 1.24787 1.32652 1.83812 1.25069 0.93427 0.81384 0.71060 1.90605 1.67637 1.37571 1.46269 1.20389 0.84679 0.86133 1.03217 0.88709 1.21862 0.96201 1.01768 0.93983 1.20997 0.93572 1.00067 0.96045 1.21767 1.00747 1.01393 0.95569 1.21790 1.00661 0.99935 0.97539 1.45810 1.70760 1.10329 1.10054 1.22057 0.72164 0.90771 0.82124 1.90480 1.50727 1.70445 1.33322 1.20682 1.00448 0.88613 0.87065 1.44275 1.08810 1.66386 1.09951 1.19444 0.90366 1.22807 1.03368 0.90485 1.25146 1.00645 0.96431 1.02138 1.70128 1.28752 1.19458 1.36701 0.85618 0.83086 0.76158 0.77717 1.21457 1.23663 1.20899 1.21169 0.87471 0.92588 0.93001 1.22718 1.00831 0.96077 0.96480 1.22459 0.98742 0.98479 0.95602 1.22261 0.99927 0.95818 0.96954 1.22444 0.98785 0.98408 0.96778 0.91459 0.93438 0.84496 0.89328 0.88039 0.92068 0.91537 0.92829 0.91551 0.95409 0.93329 0.91324 0.76008 0.89564 0.92250 0.94803 0.93608 0.90417 0.92213 0.93233 0.90189 0.92831 0.90337 0.94465 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -10.44 10.40 -51.36 -0.53 -10.97 16 3 C 0.45 15.64 7.29 71.24 0.52 16.16 16 4 O -0.53 -21.66 16.07 21.96 0.35 -21.31 16 5 C 0.16 5.54 2.33 44.24 0.10 5.64 16 6 H 0.10 3.83 5.84 -2.39 -0.01 3.81 16 7 C -0.10 -2.36 4.19 30.60 0.13 -2.23 16 8 C -0.09 -2.18 2.86 -10.79 -0.03 -2.21 16 9 C -0.14 -2.52 9.19 71.98 0.66 -1.86 16 10 C -0.14 -4.03 8.95 71.98 0.64 -3.38 16 11 N -0.71 -26.67 3.92 -446.09 -1.75 -28.42 16 12 C 0.54 25.53 5.68 87.66 0.50 26.03 16 13 O -0.57 -32.49 15.71 -3.06 -0.05 -32.54 16 14 C 0.16 7.48 5.39 85.63 0.46 7.94 16 15 N -0.58 -28.05 1.92 -678.32 -1.30 -29.35 16 16 C -0.23 -12.22 8.05 84.03 0.68 -11.54 16 17 H 0.08 4.11 5.38 -2.91 -0.02 4.09 16 18 C -0.05 -2.62 4.85 84.86 0.41 -2.21 16 19 N -0.90 -49.44 8.96 21.65 0.19 -49.25 16 20 Si 0.94 44.91 29.63 68.60 2.03 46.94 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 C 0.16 7.01 3.46 45.71 0.16 7.17 16 25 C -0.12 -4.28 6.19 31.70 0.20 -4.08 16 26 C -0.12 -3.87 6.45 31.91 0.21 -3.66 16 27 C -0.11 -3.82 6.83 31.67 0.22 -3.60 16 28 C -0.12 -5.36 6.21 31.32 0.19 -5.17 16 29 H 0.07 1.35 8.13 -2.38 -0.02 1.33 16 30 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 2.04 8.03 -2.39 -0.02 2.02 16 34 H 0.06 1.81 7.54 -2.39 -0.02 1.79 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.03 1.00 6.49 -2.39 -0.02 0.98 16 39 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.40 12.72 8.57 -92.71 -0.79 11.93 16 42 H 0.09 4.17 6.42 -2.39 -0.02 4.16 16 43 H 0.06 2.41 7.98 -2.39 -0.02 2.39 16 44 H 0.24 13.16 8.32 -92.71 -0.77 12.39 16 45 H 0.05 1.94 7.87 -2.38 -0.02 1.92 16 46 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 47 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 48 H 0.05 1.90 6.11 -2.39 -0.01 1.89 16 49 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.04 1.94 7.12 -2.39 -0.02 1.93 16 53 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -71.65 414.11 5.28 -66.37 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.10 Total: 33.73 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.24 Total: 24.80 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -2.86 Total: -107.02 kcal Atomic # 8 Polarization: -64.59 SS G_CDS: -0.23 Total: -64.82 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.65 5.28 -66.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151127545.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.789 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds