Wall clock time and date at job start Sat Apr 11 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.52999 * 109.47181 * 174.11877 * 3 2 1 5 5 C 1.52995 * 109.47059 * 200.58454 * 4 3 2 6 6 C 1.52998 * 109.47128 * 294.11815 * 3 2 1 7 7 H 1.09003 * 109.47654 * 83.64019 * 6 3 2 8 8 C 1.50701 * 109.47197 * 203.63750 * 6 3 2 9 9 O 1.21287 * 119.99935 * 100.96103 * 8 6 3 10 10 N 1.34768 * 120.00208 * 280.96413 * 8 6 3 11 11 C 1.47586 * 134.49476 * 175.49867 * 10 8 6 12 12 C 1.53941 * 86.11729 * 155.36120 * 11 10 8 13 13 O 1.42900 * 113.73861 * 269.15422 * 12 11 10 14 14 C 1.50699 * 113.74106 * 137.95559 * 12 11 10 15 15 H 1.08005 * 119.99915 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99945 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00163 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99817 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46994 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47098 * 300.00048 * 18 16 14 21 21 H 1.48506 * 109.47445 * 59.99814 * 18 16 14 22 22 C 1.47582 * 134.49463 * 355.50411 * 10 8 6 23 23 N 1.46904 * 109.47559 * 323.64029 * 6 3 2 24 24 C 1.47011 * 110.99597 * 303.63395 * 23 6 3 25 25 C 1.53096 * 109.25819 * 177.60420 * 24 23 6 26 26 O 1.43023 * 109.25887 * 56.84541 * 25 24 23 27 27 C 1.43013 * 113.73419 * 301.33277 * 26 25 24 28 28 C 1.47010 * 111.00378 * 179.97438 * 23 6 3 29 29 H 1.08998 * 109.47856 * 65.10535 * 1 2 3 30 30 H 1.09002 * 109.46847 * 185.10909 * 1 2 3 31 31 H 1.09009 * 109.47005 * 305.10428 * 1 2 3 32 32 H 1.09002 * 109.46577 * 240.00815 * 2 1 3 33 33 H 1.08990 * 109.47288 * 120.00308 * 2 1 3 34 34 H 1.09003 * 109.46886 * 54.11610 * 3 2 1 35 35 H 1.09000 * 109.46726 * 320.58141 * 4 3 2 36 36 H 1.08996 * 109.47272 * 80.58340 * 4 3 2 37 37 H 1.08996 * 109.47443 * 284.70992 * 5 4 3 38 38 H 1.09006 * 109.46952 * 44.70935 * 5 4 3 39 39 H 1.09006 * 109.47192 * 164.70375 * 5 4 3 40 40 H 1.09008 * 113.76563 * 41.05743 * 11 10 8 41 41 H 1.08999 * 113.87200 * 269.67629 * 11 10 8 42 42 H 0.96703 * 113.99928 * 178.07608 * 13 12 11 43 43 H 0.96993 * 119.99704 * 179.97438 * 17 16 14 44 44 H 1.08997 * 113.77358 * 90.33593 * 22 10 8 45 45 H 1.09003 * 113.76547 * 318.93623 * 22 10 8 46 46 H 1.09007 * 109.50578 * 297.53798 * 24 23 6 47 47 H 1.08997 * 109.51099 * 57.67039 * 24 23 6 48 48 H 1.08995 * 109.50896 * 296.91449 * 25 24 23 49 49 H 1.09001 * 109.54551 * 176.79975 * 25 24 23 50 50 H 1.08999 * 109.50857 * 298.72961 * 27 26 25 51 51 H 1.09005 * 109.53923 * 178.62206 * 27 26 25 52 52 H 1.08998 * 109.50857 * 302.33093 * 28 23 6 53 53 H 1.09004 * 109.50722 * 62.41517 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5628 1.4451 0.1478 5 6 4.0236 2.8128 0.6554 6 6 1.6543 2.1198 -1.3166 7 1 0.6334 2.4954 -1.2466 8 6 2.5940 3.2668 -1.5856 9 8 3.5047 3.1322 -2.3754 10 7 2.4227 4.4420 -0.9487 11 6 3.1731 5.7120 -0.9015 12 6 1.8338 6.3681 -0.5199 13 8 1.0803 6.8322 -1.6419 14 6 1.9524 7.3974 0.5744 15 1 2.9163 7.6114 1.0123 16 6 0.8305 8.0659 1.0166 17 7 -0.3430 7.8056 0.4831 18 14 0.9775 9.3412 2.3736 19 1 -0.3625 9.9115 2.6640 20 1 1.5194 8.7003 3.5986 21 1 1.8926 10.4261 1.9364 22 6 1.4093 4.9760 -0.0181 23 7 1.7436 1.1461 -2.4129 24 6 3.0871 0.5532 -2.4826 25 6 3.1187 -0.4961 -3.5970 26 8 2.7315 0.1144 -4.8310 27 6 1.4277 0.7014 -4.7986 28 6 1.3786 1.7628 -3.6965 29 1 -0.3635 0.4326 -0.9321 30 1 -0.3633 -1.0236 0.0915 31 1 -0.3633 0.5910 0.8408 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.5932 1.9859 0.8326 35 1 3.8601 0.6745 0.8591 36 1 4.0221 1.2430 -0.8198 37 1 3.9759 3.5372 -0.1576 38 1 3.3740 3.1363 1.4688 39 1 5.0494 2.7395 1.0170 40 1 3.5584 6.0308 -1.8701 41 1 3.9229 5.7522 -0.1113 42 1 0.2250 7.2185 -1.4086 43 1 -1.1322 8.2757 0.7944 44 1 1.6403 4.7984 1.0322 45 1 0.3862 4.7073 -0.2813 46 1 3.8183 1.3329 -2.6961 47 1 3.3261 0.0800 -1.5303 48 1 2.4261 -1.3028 -3.3570 49 1 4.1275 -0.8982 -3.6907 50 1 0.6860 -0.0705 -4.5936 51 1 1.2131 1.1660 -5.7611 52 1 0.3707 2.1724 -3.6299 53 1 2.0818 2.5625 -3.9291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186812947.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:26 Heat of formation + Delta-G solvation = -76.129239 kcal Electronic energy + Delta-G solvation = -33712.573375 eV Core-core repulsion = 29586.309905 eV Total energy + Delta-G solvation = -4126.263470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48707 -40.54805 -39.12061 -37.87427 -35.97636 -35.18046 -34.14247 -32.90988 -32.18694 -31.15145 -29.69671 -27.40840 -27.29386 -26.98325 -25.38420 -24.60902 -23.08768 -22.16736 -21.33066 -21.00012 -19.93040 -19.22908 -18.11688 -17.96741 -17.38335 -17.06413 -16.78069 -16.59274 -16.24008 -15.95992 -15.90594 -15.50382 -15.27771 -14.95829 -14.80498 -14.47248 -14.33789 -14.13245 -13.87541 -13.81886 -13.46452 -13.42763 -13.31197 -13.22791 -12.86863 -12.84898 -12.75830 -12.47869 -12.30721 -12.25365 -12.24015 -12.16057 -11.81169 -11.72224 -11.45938 -11.34960 -11.30426 -11.10338 -11.04759 -10.67306 -10.45475 -10.29738 -9.49647 -9.14872 -8.26936 -6.44251 1.46309 1.48914 1.55571 1.62561 1.96941 2.39660 2.68193 2.95184 2.98977 3.38173 3.64774 3.75501 3.78640 3.96324 4.03315 4.09404 4.15512 4.21584 4.27836 4.32924 4.41693 4.47125 4.48265 4.51478 4.54327 4.58856 4.60567 4.67176 4.72455 4.78708 4.82693 4.85718 4.89756 4.92401 4.95038 5.07156 5.08700 5.14269 5.19869 5.23061 5.26107 5.28985 5.41195 5.55472 5.62969 5.71857 5.79184 5.88486 5.92521 6.21273 6.60496 6.88775 7.17030 7.29685 7.45615 8.78148 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.003625 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.268867 B = 7721.718044 C = 8134.629506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.068 4.068 4 C -0.143 4.143 5 C -0.175 4.175 6 C 0.082 3.918 7 H 0.094 0.906 8 C 0.516 3.484 9 O -0.584 6.584 10 N -0.626 5.626 11 C 0.111 3.889 12 C 0.221 3.779 13 O -0.589 6.589 14 C -0.557 4.557 15 H 0.070 0.930 16 C 0.036 3.964 17 N -0.916 5.916 18 Si 0.965 3.035 19 H -0.282 1.282 20 H -0.267 1.267 21 H -0.277 1.277 22 C 0.098 3.902 23 N -0.484 5.484 24 C -0.023 4.023 25 C 0.065 3.935 26 O -0.407 6.407 27 C 0.075 3.925 28 C 0.003 3.997 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.388 0.612 43 H 0.276 0.724 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.115 0.885 48 H 0.071 0.929 49 H 0.107 0.893 50 H 0.075 0.925 51 H 0.104 0.896 52 H 0.085 0.915 53 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 -16.769 0.294 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.087 4.087 4 C -0.180 4.180 5 C -0.233 4.233 6 C -0.031 4.031 7 H 0.112 0.888 8 C 0.307 3.693 9 O -0.467 6.467 10 N -0.359 5.359 11 C -0.012 4.012 12 C 0.180 3.820 13 O -0.402 6.402 14 C -0.595 4.595 15 H 0.088 0.912 16 C -0.164 4.164 17 N -0.556 5.556 18 Si 0.790 3.210 19 H -0.208 1.208 20 H -0.192 1.192 21 H -0.202 1.202 22 C -0.025 4.025 23 N -0.207 5.207 24 C -0.150 4.150 25 C -0.012 4.012 26 O -0.326 6.326 27 C -0.002 4.002 28 C -0.125 4.125 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.243 0.757 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.132 0.868 48 H 0.090 0.910 49 H 0.125 0.875 50 H 0.093 0.907 51 H 0.122 0.878 52 H 0.103 0.897 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.340 -17.590 -0.622 17.652 hybrid contribution -0.113 2.297 0.903 2.471 sum 1.226 -15.293 0.281 15.345 Atomic orbital electron populations 1.21692 0.95478 1.01674 1.01335 1.21613 0.96494 0.93386 1.02868 1.21276 0.95912 0.98249 0.93302 1.22191 0.95111 0.97809 1.02897 1.22334 1.00980 0.98349 1.01613 1.21843 0.98003 0.88603 0.94604 0.88772 1.21843 0.85615 0.82800 0.79025 1.90552 1.36281 1.81990 1.37833 1.50364 1.28194 1.12147 1.45222 1.23362 0.96688 0.80930 1.00173 1.20101 0.87509 0.90110 0.84319 1.86047 1.37168 1.81957 1.34992 1.21703 0.95253 1.23156 1.19370 0.91225 1.25690 0.94525 0.97822 0.98406 1.69363 0.99473 1.43059 1.43726 0.85500 0.77301 0.78908 0.79289 1.20751 1.19153 1.20219 1.23993 0.91229 0.94025 0.93247 1.62873 1.26521 1.28816 1.02443 1.23730 0.90861 0.98928 1.01482 1.22831 1.01735 0.94088 0.82534 1.87938 1.34655 1.74968 1.35041 1.22635 0.84796 0.94670 0.98111 1.22915 1.01083 0.97500 0.91013 0.93055 0.91972 0.93582 0.89933 0.90988 0.90425 0.89567 0.90604 0.92722 0.92784 0.92808 0.93194 0.88403 0.75716 0.91423 0.89170 0.92000 0.92173 0.86777 0.91049 0.87514 0.90665 0.87789 0.89704 0.95826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.64 71.98 0.69 -2.01 16 2 C -0.11 -2.01 4.73 30.60 0.14 -1.87 16 3 C -0.07 -1.65 2.01 -10.79 -0.02 -1.67 16 4 C -0.14 -3.57 4.29 30.59 0.13 -3.43 16 5 C -0.18 -5.16 9.03 71.98 0.65 -4.51 16 6 C 0.08 2.41 1.53 44.17 0.07 2.48 16 7 H 0.09 2.89 7.93 -2.39 -0.02 2.87 16 8 C 0.52 19.23 3.38 87.66 0.30 19.52 16 9 O -0.58 -24.81 12.02 -3.05 -0.04 -24.85 16 10 N -0.63 -24.81 2.18 -840.26 -1.83 -26.64 16 11 C 0.11 4.79 7.47 86.48 0.65 5.44 16 12 C 0.22 10.37 1.44 -10.88 -0.02 10.35 16 13 O -0.59 -30.52 13.48 -148.98 -2.01 -32.52 16 14 C -0.56 -27.30 8.62 25.60 0.22 -27.08 16 15 H 0.07 3.33 7.81 -2.91 -0.02 3.31 16 16 C 0.04 1.75 5.40 84.66 0.46 2.21 16 17 N -0.92 -45.29 11.08 21.45 0.24 -45.06 16 18 Si 0.96 38.76 29.54 68.60 2.03 40.78 16 19 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 22 C 0.10 3.98 7.97 86.48 0.69 4.67 16 23 N -0.48 -12.91 3.45 -874.38 -3.02 -15.93 16 24 C -0.02 -0.60 2.94 86.31 0.25 -0.35 16 25 C 0.06 1.45 7.01 72.01 0.50 1.95 16 26 O -0.41 -11.20 10.83 -148.98 -1.61 -12.81 16 27 C 0.07 1.79 7.01 72.01 0.50 2.29 16 28 C 0.00 0.10 5.27 86.31 0.45 0.55 16 29 H 0.05 1.08 7.23 -2.39 -0.02 1.06 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.08 1.57 4.95 -2.39 -0.01 1.56 16 33 H 0.07 1.15 8.01 -2.39 -0.02 1.13 16 34 H 0.08 1.96 7.73 -2.39 -0.02 1.94 16 35 H 0.09 1.73 7.88 -2.39 -0.02 1.71 16 36 H 0.08 2.09 3.74 -2.39 -0.01 2.09 16 37 H 0.05 1.94 3.02 -2.39 -0.01 1.93 16 38 H 0.05 1.56 7.78 -2.38 -0.02 1.54 16 39 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.10 3.89 7.89 -2.39 -0.02 3.87 16 42 H 0.39 20.30 6.45 -74.06 -0.48 19.82 16 43 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 44 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 45 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.06 2.07 4.74 -2.38 -0.01 2.06 16 47 H 0.11 2.55 3.67 -2.39 -0.01 2.54 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 52 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 53 H 0.02 0.88 6.13 -2.38 -0.01 0.87 16 Total: -1.00 -57.62 384.43 -0.12 -57.74 By element: Atomic # 1 Polarization: 50.29 SS G_CDS: 0.44 Total: 50.73 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.68 Total: 8.56 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -4.61 Total: -87.63 kcal Atomic # 8 Polarization: -66.53 SS G_CDS: -3.66 Total: -70.19 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Total: -57.62 -0.12 -57.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186812947.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.386 kcal (2) G-P(sol) polarization free energy of solvation -57.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds