Wall clock time and date at job start Sat Apr 11 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47150 * 2 1 4 4 C 1.53001 * 109.47642 * 295.87136 * 3 2 1 5 5 C 1.53003 * 109.47475 * 175.86825 * 3 2 1 6 6 N 1.46508 * 109.47290 * 55.87088 * 3 2 1 7 7 C 1.46496 * 120.00047 * 234.75133 * 6 3 2 8 8 C 1.50699 * 109.46781 * 269.05175 * 7 6 3 9 9 H 1.08003 * 120.00178 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99908 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99861 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00035 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46762 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47292 * 119.99641 * 12 10 8 15 15 H 1.48499 * 109.46996 * 240.00050 * 12 10 8 16 16 C 1.34772 * 119.99720 * 54.74109 * 6 3 2 17 17 O 1.21282 * 120.00053 * 3.98303 * 16 6 3 18 18 C 1.50705 * 119.99981 * 183.97812 * 16 6 3 19 19 H 1.09004 * 109.49402 * 34.07592 * 18 16 6 20 20 C 1.53035 * 109.49997 * 154.14404 * 18 16 6 21 21 C 1.53035 * 109.54057 * 181.28071 * 20 18 16 22 22 C 1.53190 * 109.34348 * 298.68465 * 21 20 18 23 23 N 1.46937 * 108.77130 * 54.61763 * 22 21 20 24 24 C 1.34778 * 120.62663 * 126.41208 * 23 22 21 25 25 O 1.21509 * 119.99746 * 185.34924 * 24 23 22 26 26 O 1.34633 * 120.00204 * 5.36043 * 24 23 22 27 27 C 1.45198 * 116.99997 * 179.97438 * 26 24 23 28 28 C 1.46923 * 118.74023 * 306.39134 * 23 22 21 29 29 H 1.08998 * 109.47105 * 306.12495 * 1 2 3 30 30 H 1.09003 * 109.46852 * 66.12286 * 1 2 3 31 31 H 1.09000 * 109.47317 * 186.11855 * 1 2 3 32 32 H 1.09000 * 109.47052 * 240.00307 * 2 1 3 33 33 H 1.09000 * 109.46804 * 119.99755 * 2 1 3 34 34 H 1.08994 * 109.47490 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.46694 * 300.00449 * 4 3 2 36 36 H 1.09000 * 109.46855 * 59.99249 * 4 3 2 37 37 H 1.09004 * 109.46637 * 300.00412 * 5 3 2 38 38 H 1.08999 * 109.46538 * 59.99748 * 5 3 2 39 39 H 1.08994 * 109.47485 * 180.02562 * 5 3 2 40 40 H 1.09004 * 109.47531 * 29.04865 * 7 6 3 41 41 H 1.09000 * 109.47294 * 149.05003 * 7 6 3 42 42 H 0.97006 * 119.99806 * 180.02562 * 11 10 8 43 43 H 1.08999 * 109.46333 * 301.33953 * 20 18 16 44 44 H 1.09004 * 109.45589 * 61.29568 * 20 18 16 45 45 H 1.09000 * 109.49870 * 178.71520 * 21 20 18 46 46 H 1.09005 * 109.46829 * 58.64102 * 21 20 18 47 47 H 1.08996 * 109.58946 * 294.83307 * 22 21 20 48 48 H 1.08998 * 109.70672 * 174.47305 * 22 21 20 49 49 H 1.08999 * 109.47587 * 59.99202 * 27 26 24 50 50 H 1.09002 * 109.47267 * 179.97438 * 27 26 24 51 51 H 1.09006 * 109.46902 * 299.99186 * 27 26 24 52 52 H 1.09000 * 109.58026 * 293.82397 * 28 23 22 53 53 H 1.08998 * 109.70280 * 173.47126 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6166 2.1332 -1.2979 5 6 3.5665 1.4438 0.1039 6 7 1.4722 2.1612 1.1434 7 6 0.7389 3.4117 0.9317 8 6 1.6928 4.5748 1.0221 9 1 2.7406 4.4000 1.2173 10 6 1.2280 5.8622 0.8557 11 7 -0.0478 6.0750 0.6175 12 14 2.4105 7.3039 0.9670 13 1 3.7806 6.8003 1.2406 14 1 2.4040 8.0499 -0.3169 15 1 1.9871 8.2076 2.0667 16 6 1.6242 1.6719 2.3899 17 8 2.2920 0.6762 2.5732 18 6 0.9647 2.3621 3.5560 19 1 0.0112 2.7835 3.2374 20 6 0.7265 1.3511 4.6799 21 6 0.0279 2.0440 5.8520 22 6 0.9267 3.1622 6.3892 23 7 1.2784 4.0599 5.2804 24 6 1.0592 5.3863 5.3749 25 8 1.2632 6.1055 4.4170 26 8 0.6144 5.9145 6.5306 27 6 0.4009 7.3504 6.5601 28 6 1.8741 3.4841 4.0670 29 1 -0.3633 0.6058 0.8301 30 1 -0.3633 0.4160 -0.9397 31 1 -0.3634 -1.0218 0.1095 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9796 3.1609 -1.2977 35 1 2.0391 1.5984 -2.1485 36 1 0.5292 2.1322 -1.3719 37 1 3.8681 0.9517 1.0286 38 1 3.9890 0.9090 -0.7467 39 1 3.9298 2.4714 0.1044 40 1 0.2748 3.3983 -0.0545 41 1 -0.0325 3.5142 1.6949 42 1 -0.3747 6.9807 0.5000 43 1 0.0995 0.5393 4.3113 44 1 1.6825 0.9482 5.0144 45 1 -0.1619 1.3182 6.6429 46 1 -0.9171 2.4681 5.5125 47 1 1.8339 2.7306 6.8118 48 1 0.3959 3.7226 7.1588 49 1 -0.3403 7.6232 5.8089 50 1 0.0430 7.6444 7.5468 51 1 1.3397 7.8617 6.3467 52 1 2.8586 3.0787 4.3004 53 1 1.9683 4.2551 3.3024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189916564.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:38 Heat of formation + Delta-G solvation = -133.224137 kcal Electronic energy + Delta-G solvation = -33690.000250 eV Core-core repulsion = 29561.260960 eV Total energy + Delta-G solvation = -4128.739291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90477 -41.23156 -39.14169 -37.71721 -37.15010 -35.54562 -34.07224 -33.60533 -32.06777 -31.17834 -29.40176 -28.71158 -27.91838 -26.19531 -25.35276 -24.78431 -23.97556 -22.88502 -21.68604 -20.58807 -19.41460 -18.81967 -18.51367 -18.02621 -17.55040 -17.47980 -17.02764 -16.49124 -16.11211 -15.73108 -15.67149 -15.33246 -15.11323 -14.98299 -14.57508 -14.45792 -14.28723 -14.19638 -13.87059 -13.73335 -13.63502 -13.51177 -13.26141 -12.94141 -12.90196 -12.84538 -12.77096 -12.58391 -12.41883 -12.26194 -12.20935 -12.01975 -12.00693 -11.80163 -11.76141 -11.68036 -11.57506 -11.52235 -11.42945 -11.27688 -10.51978 -10.21607 -9.75996 -9.28687 -8.14418 -6.21340 1.09655 1.32197 1.43744 1.45075 1.75051 1.88941 2.32818 2.49267 2.98654 3.21985 3.64561 3.83509 3.89478 3.95109 4.07161 4.13930 4.17841 4.21527 4.31164 4.32672 4.36756 4.46370 4.58382 4.60240 4.67966 4.70430 4.71306 4.77346 4.84548 4.85588 4.92862 4.95451 4.99563 5.01027 5.05895 5.09706 5.16807 5.20764 5.27561 5.31632 5.35976 5.40715 5.41915 5.44870 5.52110 5.59231 5.75582 6.04459 6.15372 6.33262 6.67705 6.93357 7.28439 7.42129 7.52995 8.90896 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.005921 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.550686 B = 4727.536406 C = 6782.698051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.168 3.832 4 C -0.142 4.142 5 C -0.149 4.149 6 N -0.582 5.582 7 C 0.253 3.747 8 C -0.517 4.517 9 H 0.045 0.955 10 C 0.047 3.953 11 N -0.912 5.912 12 Si 0.932 3.068 13 H -0.277 1.277 14 H -0.280 1.280 15 H -0.293 1.293 16 C 0.523 3.477 17 O -0.573 6.573 18 C -0.110 4.110 19 H 0.077 0.923 20 C -0.094 4.094 21 C -0.125 4.125 22 C 0.107 3.893 23 N -0.589 5.589 24 C 0.635 3.365 25 O -0.593 6.593 26 O -0.367 6.367 27 C 0.051 3.949 28 C 0.136 3.864 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.115 0.885 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.048 0.952 50 H 0.146 0.854 51 H 0.053 0.947 52 H 0.067 0.933 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -8.054 9.479 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C 0.084 3.916 4 C -0.200 4.200 5 C -0.207 4.207 6 N -0.312 5.312 7 C 0.132 3.868 8 C -0.555 4.555 9 H 0.063 0.937 10 C -0.154 4.154 11 N -0.552 5.552 12 Si 0.761 3.239 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.220 1.220 16 C 0.311 3.689 17 O -0.455 6.455 18 C -0.132 4.132 19 H 0.095 0.905 20 C -0.132 4.132 21 C -0.163 4.163 22 C -0.014 4.014 23 N -0.329 5.329 24 C 0.389 3.611 25 O -0.482 6.482 26 O -0.281 6.281 27 C -0.043 4.043 28 C 0.014 3.986 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.133 0.867 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.067 0.933 50 H 0.164 0.836 51 H 0.072 0.928 52 H 0.086 0.914 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.479 -8.113 9.247 12.311 hybrid contribution 0.442 1.745 -0.304 1.825 sum -0.037 -6.368 8.943 10.979 Atomic orbital electron populations 1.21675 0.95673 1.01249 1.01205 1.21872 0.96329 0.95027 1.03187 1.20484 0.93135 0.92031 0.85923 1.22031 1.01441 1.00764 0.95716 1.22079 0.95009 1.01072 1.02542 1.48322 1.53239 1.23999 1.05648 1.19097 0.91026 0.79594 0.97068 1.21383 0.94442 0.91251 1.48428 0.93662 1.25196 0.95681 1.00220 0.94278 1.69963 1.14149 1.21410 1.49684 0.85894 0.80016 0.81264 0.76727 1.20148 1.20552 1.21968 1.20332 0.80486 0.83857 0.84243 1.90510 1.42091 1.27625 1.85303 1.21561 0.99735 0.96958 0.94949 0.90483 1.21358 1.01904 0.96191 0.93731 1.21922 0.98044 0.97828 0.98458 1.22038 1.00392 0.91335 0.87602 1.46925 1.64312 1.02855 1.18840 1.18360 0.77148 0.83895 0.81693 1.91109 1.57584 1.60627 1.38917 1.86182 1.79739 1.27963 1.34200 1.23432 1.01519 0.74225 1.05080 1.21535 0.94155 0.96334 0.86619 0.95009 0.92397 0.91784 0.89678 0.91299 0.93117 0.89799 0.92541 0.92691 0.90187 0.94338 0.94763 0.96775 0.93091 0.91255 0.90662 0.86667 0.92281 0.89426 0.87725 0.93345 0.83620 0.92803 0.91430 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.37 71.98 0.67 -3.46 16 2 C -0.13 -3.86 4.61 30.59 0.14 -3.72 16 3 C 0.17 5.96 0.72 3.60 0.00 5.96 16 4 C -0.14 -4.85 6.90 71.98 0.50 -4.35 16 5 C -0.15 -5.17 8.48 71.98 0.61 -4.56 16 6 N -0.58 -23.74 1.48 -779.07 -1.15 -24.89 16 7 C 0.25 12.07 4.30 85.63 0.37 12.44 16 8 C -0.52 -27.38 6.53 25.60 0.17 -27.22 16 9 H 0.05 2.49 7.75 -2.91 -0.02 2.47 16 10 C 0.05 2.64 5.46 84.66 0.46 3.10 16 11 N -0.91 -52.87 13.29 21.45 0.28 -52.59 16 12 Si 0.93 47.25 29.54 68.60 2.03 49.28 16 13 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 15 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 16 C 0.52 20.76 5.77 87.66 0.51 21.26 16 17 O -0.57 -23.24 12.42 -3.04 -0.04 -23.28 16 18 C -0.11 -4.02 1.96 -11.46 -0.02 -4.04 16 19 H 0.08 3.16 6.13 -2.38 -0.01 3.14 16 20 C -0.09 -2.61 4.69 30.62 0.14 -2.46 16 21 C -0.12 -2.70 6.08 30.67 0.19 -2.51 16 22 C 0.11 2.51 6.43 86.36 0.56 3.07 16 23 N -0.59 -20.25 2.97 -949.24 -2.82 -23.07 16 24 C 0.63 24.78 8.42 129.79 1.09 25.87 16 25 O -0.59 -29.24 15.55 19.81 0.31 -28.93 16 26 O -0.37 -11.28 9.23 -55.42 -0.51 -11.79 16 27 C 0.05 1.29 10.56 113.37 1.20 2.48 16 28 C 0.14 5.32 5.66 86.36 0.49 5.81 16 29 H 0.03 1.07 6.96 -2.39 -0.02 1.05 16 30 H 0.06 1.61 6.85 -2.39 -0.02 1.60 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.36 6.08 -2.39 -0.01 2.34 16 34 H 0.05 2.02 7.19 -2.39 -0.02 2.00 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 1.95 5.67 -2.39 -0.01 1.94 16 37 H 0.05 2.05 6.43 -2.38 -0.02 2.03 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.03 1.71 5.66 -2.38 -0.01 1.70 16 41 H 0.01 0.75 5.84 -2.39 -0.01 0.73 16 42 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.08 7.91 -2.38 -0.02 2.06 16 45 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.10 2.14 6.96 -2.39 -0.02 2.12 16 49 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 52 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 53 H 0.10 4.77 4.28 -2.39 -0.01 4.76 16 Total: -1.00 -68.99 399.60 6.06 -62.93 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.89 Total: 24.69 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: 7.07 Total: 27.66 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -3.69 Total: -100.55 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -0.24 Total: -64.00 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -68.99 6.06 -62.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189916564.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.295 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds