Wall clock time and date at job start Sat Apr 11 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 C 1.52995 * 109.47328 * 119.99969 * 2 1 3 5 5 C 1.52999 * 109.46854 * 64.99880 * 4 2 1 6 6 H 1.08998 * 109.49028 * 304.96826 * 5 4 2 7 7 C 1.53095 * 109.48140 * 184.93971 * 5 4 2 8 8 C 1.53179 * 109.16499 * 182.40610 * 7 5 4 9 9 H 1.09002 * 109.61477 * 176.88832 * 8 7 5 10 10 N 1.46493 * 109.54309 * 297.11538 * 8 7 5 11 11 C 1.34784 * 119.99864 * 204.55394 * 10 8 7 12 12 O 1.21355 * 119.99822 * 359.72859 * 11 10 8 13 13 C 1.49445 * 119.99977 * 179.72558 * 11 10 8 14 14 O 1.21355 * 120.00200 * 0.02562 * 13 11 10 15 15 N 1.34774 * 119.99983 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00240 * 180.02562 * 15 13 11 17 17 C 1.53003 * 109.47046 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46986 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47352 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99765 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00084 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00095 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99895 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47263 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46998 * 120.00369 * 23 21 19 26 26 H 1.48501 * 109.47057 * 240.00285 * 23 21 19 27 27 C 1.53181 * 109.03231 * 56.98354 * 8 7 5 28 28 C 1.53083 * 109.16302 * 303.01536 * 27 8 7 29 29 O 1.42903 * 109.41373 * 57.61407 * 28 27 8 30 30 H 1.09000 * 109.47140 * 59.99674 * 1 2 3 31 31 H 1.08992 * 109.47463 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46518 * 300.00065 * 1 2 3 33 33 H 1.09004 * 109.46764 * 240.00427 * 2 1 3 34 34 H 1.09001 * 109.47203 * 180.02562 * 3 2 1 35 35 H 1.09012 * 109.46994 * 300.00193 * 3 2 1 36 36 H 1.08997 * 109.47455 * 59.99842 * 3 2 1 37 37 H 1.08995 * 109.47089 * 305.00003 * 4 2 1 38 38 H 1.09002 * 109.47020 * 184.99539 * 4 2 1 39 39 H 1.09003 * 109.51944 * 62.50228 * 7 5 4 40 40 H 1.09000 * 109.52130 * 302.31873 * 7 5 4 41 41 H 0.97000 * 120.00740 * 24.28087 * 10 8 7 42 42 H 0.97005 * 119.99841 * 0.02562 * 15 13 11 43 43 H 1.09000 * 109.46642 * 300.00072 * 16 15 13 44 44 H 1.08994 * 109.47228 * 59.99735 * 16 15 13 45 45 H 1.08998 * 109.47018 * 299.99693 * 17 16 15 46 46 H 1.09002 * 109.47113 * 60.00115 * 17 16 15 47 47 H 1.09005 * 109.47357 * 300.00548 * 18 17 16 48 48 H 1.09007 * 109.47195 * 60.00054 * 18 17 16 49 49 H 0.96996 * 120.00083 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.52266 * 62.92955 * 27 8 7 51 51 H 1.09004 * 109.51720 * 183.10761 * 27 8 7 52 52 H 1.09006 * 109.47841 * 177.59107 * 28 27 8 53 53 H 1.08997 * 109.48362 * 297.62991 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 1 0.5563 -2.2710 1.0532 7 6 2.0369 -2.8898 2.4918 8 6 1.6830 -4.3773 2.3991 9 1 2.0160 -4.8896 3.3018 10 7 0.2329 -4.5280 2.2566 11 6 -0.3669 -5.6719 2.6420 12 8 0.2951 -6.5787 3.1026 13 6 -1.8471 -5.8234 2.5023 14 8 -2.5090 -4.9167 2.0414 15 7 -2.4468 -6.9670 2.8882 16 6 -3.8978 -7.1157 2.7508 17 6 -4.3191 -8.4966 3.2574 18 6 -5.8345 -8.6517 3.1145 19 6 -6.2495 -10.0120 3.6129 20 1 -5.5068 -10.6972 3.9939 21 6 -7.5776 -10.3814 3.5834 22 7 -8.4821 -9.5468 3.1198 23 14 -8.0920 -12.0672 4.2019 24 1 -6.8938 -12.8106 4.6674 25 1 -9.0469 -11.9110 5.3284 26 1 -8.7444 -12.8206 3.1009 27 6 2.3836 -4.9823 1.1786 28 6 1.9686 -4.2072 -0.0745 29 8 2.2979 -2.8264 0.0902 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.6055 -0.2617 2.1369 38 1 3.1264 -0.6443 1.2950 39 1 1.4987 -2.4386 3.3255 40 1 3.1101 -2.7796 2.6476 41 1 -0.2964 -3.8032 1.8885 42 1 -1.9177 -7.6916 3.2570 43 1 -4.3990 -6.3449 3.3362 44 1 -4.1757 -7.0136 1.7018 45 1 -3.8178 -9.2671 2.6716 46 1 -4.0411 -8.5991 4.3064 47 1 -6.3356 -7.8811 3.7004 48 1 -6.1129 -8.5490 2.0656 49 1 -9.4164 -9.8065 3.0994 50 1 3.4638 -4.9145 1.3079 51 1 2.0934 -6.0277 1.0732 52 1 2.4971 -4.6061 -0.9404 53 1 0.8939 -4.3090 -0.2257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343141194.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:52 Heat of formation + Delta-G solvation = -176.526247 kcal Electronic energy + Delta-G solvation = -29775.598884 eV Core-core repulsion = 25644.981873 eV Total energy + Delta-G solvation = -4130.617011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02159 -40.78377 -39.48312 -37.33797 -37.10246 -36.18334 -35.21239 -33.07186 -32.75792 -32.50715 -29.04050 -28.20820 -27.98595 -26.40612 -25.24919 -24.30401 -23.41278 -22.38612 -21.68867 -20.81992 -20.58303 -19.60132 -18.51665 -17.93348 -17.37836 -17.30691 -17.03405 -16.79071 -16.53642 -16.28833 -16.21336 -15.93699 -15.41701 -15.24948 -14.92319 -14.82254 -14.31246 -14.29546 -13.95792 -13.81349 -13.75748 -13.52735 -13.38965 -13.10389 -12.96355 -12.89136 -12.79153 -12.71282 -12.55837 -12.38038 -12.34807 -12.24089 -11.81155 -11.71598 -11.57625 -11.56356 -11.45518 -11.22758 -11.06143 -10.73842 -10.56590 -10.56024 -10.33441 -10.21938 -8.20185 -6.31048 0.26135 1.23439 1.41399 1.42099 1.54976 2.06025 2.40939 2.56114 2.81075 3.13903 3.34424 3.51976 3.67063 3.78841 3.93768 4.05793 4.06706 4.10424 4.16696 4.18236 4.25046 4.32699 4.51112 4.58228 4.60953 4.71237 4.76137 4.80680 4.83928 4.84924 4.88762 4.90235 4.94631 4.98847 5.03522 5.08304 5.13742 5.13763 5.17733 5.20614 5.25323 5.38388 5.48309 5.51072 5.57325 5.69796 5.83375 5.83812 6.21704 6.27047 6.27765 6.64526 6.85929 6.86572 7.38479 8.91869 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.001715 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.925420 B =16321.586507 C =17196.450884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.102 4.102 5 C 0.082 3.918 6 H 0.055 0.945 7 C -0.151 4.151 8 C 0.138 3.862 9 H 0.095 0.905 10 N -0.686 5.686 11 C 0.517 3.483 12 O -0.535 6.535 13 C 0.499 3.501 14 O -0.548 6.548 15 N -0.686 5.686 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.542 4.542 20 H 0.064 0.936 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.162 4.162 28 C 0.061 3.939 29 O -0.383 6.383 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.414 0.586 42 H 0.419 0.581 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.067 0.933 47 H -0.003 1.003 48 H -0.004 1.004 49 H 0.263 0.737 50 H 0.099 0.901 51 H 0.068 0.932 52 H 0.105 0.895 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.439 19.408 -4.123 33.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.140 4.140 5 C 0.024 3.976 6 H 0.073 0.927 7 C -0.188 4.188 8 C 0.035 3.965 9 H 0.113 0.887 10 N -0.340 5.340 11 C 0.298 3.702 12 O -0.412 6.412 13 C 0.280 3.720 14 O -0.426 6.426 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.014 4.014 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.184 1.184 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.201 4.201 28 C -0.016 4.016 29 O -0.303 6.303 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.252 0.748 42 H 0.257 0.743 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.117 0.883 51 H 0.087 0.913 52 H 0.123 0.877 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 27.403 19.525 -4.267 33.917 hybrid contribution -1.161 -1.091 0.242 1.611 sum 26.242 18.434 -4.025 32.321 Atomic orbital electron populations 1.21923 0.95564 1.01388 1.02013 1.21045 0.95473 0.96416 0.98429 1.21821 1.01078 0.95388 1.01957 1.21671 1.02223 0.91268 0.98799 1.22297 0.95929 0.93567 0.85769 0.92703 1.22514 1.04748 0.92494 0.99086 1.21292 0.77644 0.97848 0.99710 0.88733 1.45946 1.09492 1.16450 1.62138 1.19927 0.87700 0.83707 0.78906 1.90762 1.65755 1.40215 1.44425 1.20379 0.88961 0.83273 0.79400 1.90754 1.66351 1.40506 1.45018 1.45887 1.09396 1.17005 1.61497 1.21481 0.78082 0.98613 1.01420 1.21640 0.97412 0.94143 1.01179 1.18945 0.91171 0.95734 0.95521 1.21710 0.93220 1.01470 1.41604 0.91764 1.25977 0.96944 1.01464 0.95533 1.70101 1.01875 1.37711 1.47617 0.85389 0.78453 0.79205 0.77934 1.18448 1.20534 1.20563 1.22539 1.02293 1.00139 0.95088 1.22567 0.99669 0.81405 0.97961 1.87943 1.69051 1.23129 1.50129 0.92867 0.93375 0.92148 0.91838 0.92408 0.92852 0.92219 0.89206 0.90570 0.88806 0.87640 0.74820 0.74319 0.91695 0.91756 0.91458 0.91434 0.98490 0.98524 0.92796 0.88304 0.91290 0.87679 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.96 71.98 0.64 -1.25 16 2 C -0.10 -1.11 2.87 -10.79 -0.03 -1.14 16 3 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 4 C -0.10 -1.00 4.39 30.59 0.13 -0.87 16 5 C 0.08 0.97 2.33 30.63 0.07 1.05 16 6 H 0.06 0.73 4.92 -2.39 -0.01 0.72 16 7 C -0.15 -1.48 5.07 30.69 0.16 -1.32 16 8 C 0.14 1.95 2.81 45.11 0.13 2.08 16 9 H 0.09 1.47 7.59 -2.39 -0.02 1.45 16 10 N -0.69 -12.39 4.39 -443.29 -1.95 -14.34 16 11 C 0.52 12.44 7.86 87.27 0.69 13.12 16 12 O -0.53 -14.55 16.15 -3.26 -0.05 -14.60 16 13 C 0.50 14.17 7.89 87.27 0.69 14.86 16 14 O -0.55 -17.93 16.48 -3.26 -0.05 -17.98 16 15 N -0.69 -19.59 5.55 -464.41 -2.58 -22.16 16 16 C 0.13 4.28 5.67 86.38 0.49 4.77 16 17 C -0.11 -4.03 5.27 30.60 0.16 -3.87 16 18 C 0.02 1.22 4.97 29.85 0.15 1.37 16 19 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 20 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 21 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 22 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 23 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C -0.16 -2.22 5.80 30.68 0.18 -2.04 16 28 C 0.06 0.86 6.68 72.01 0.48 1.35 16 29 O -0.38 -5.81 9.86 -148.98 -1.47 -7.28 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 6.46 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.06 0.93 7.70 -2.38 -0.02 0.91 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.41 7.09 6.54 -92.71 -0.61 6.49 16 42 H 0.42 10.70 7.94 -92.70 -0.74 9.97 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 48 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 49 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 50 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 53 H 0.04 0.66 7.75 -2.39 -0.02 0.64 16 Total: -1.00 -67.24 422.42 1.06 -66.19 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.45 Total: 22.53 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.29 Total: -2.11 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -4.24 Total: -92.50 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.58 Total: -39.86 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.24 1.06 -66.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343141194.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.341 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds