Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47353 * 2 1 4 4 C 1.53003 * 109.46957 * 240.00263 * 2 1 3 5 5 C 1.53001 * 109.47407 * 120.00739 * 2 1 3 6 6 H 1.08997 * 109.48841 * 180.02562 * 5 2 1 7 7 C 1.53088 * 109.48231 * 59.99671 * 5 2 1 8 8 C 1.53182 * 109.16180 * 182.41259 * 7 5 2 9 9 H 1.09005 * 109.53799 * 176.93546 * 8 7 5 10 10 N 1.46504 * 109.54064 * 297.11054 * 8 7 5 11 11 C 1.34777 * 119.99854 * 204.99819 * 10 8 7 12 12 O 1.21353 * 119.99804 * 0.02562 * 11 10 8 13 13 C 1.49445 * 120.00110 * 180.02562 * 11 10 8 14 14 O 1.21353 * 119.99618 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00114 * 180.02562 * 13 11 10 16 16 C 1.46498 * 119.99828 * 180.27895 * 15 13 11 17 17 C 1.52996 * 109.47059 * 179.72339 * 16 15 13 18 18 C 1.53003 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47008 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00362 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99653 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00420 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99928 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47172 * 90.00092 * 23 21 19 25 25 H 1.48503 * 109.46928 * 209.99961 * 23 21 19 26 26 H 1.48499 * 109.46876 * 329.99803 * 23 21 19 27 27 C 1.53179 * 109.03706 * 56.98063 * 8 7 5 28 28 C 1.53089 * 109.16049 * 303.01966 * 27 8 7 29 29 O 1.42897 * 109.42030 * 57.61013 * 28 27 8 30 30 H 1.09001 * 109.46545 * 299.99634 * 1 2 3 31 31 H 1.08997 * 109.47085 * 59.99443 * 1 2 3 32 32 H 1.08996 * 109.47222 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46998 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.46745 * 300.00267 * 3 2 1 35 35 H 1.08995 * 109.46348 * 60.00530 * 3 2 1 36 36 H 1.09001 * 109.47360 * 300.00038 * 4 2 1 37 37 H 1.09008 * 109.47174 * 59.99785 * 4 2 1 38 38 H 1.09003 * 109.47371 * 179.97438 * 4 2 1 39 39 H 1.08993 * 109.52334 * 62.50405 * 7 5 2 40 40 H 1.09001 * 109.57097 * 302.34558 * 7 5 2 41 41 H 0.97000 * 119.99819 * 25.00538 * 10 8 7 42 42 H 0.97001 * 119.99727 * 359.97438 * 15 13 11 43 43 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 44 44 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 45 45 H 1.09004 * 109.47066 * 299.99732 * 17 16 15 46 46 H 1.09000 * 109.47665 * 59.99541 * 17 16 15 47 47 H 1.08990 * 109.47021 * 299.99845 * 18 17 16 48 48 H 1.09002 * 109.46620 * 60.00037 * 18 17 16 49 49 H 0.97000 * 120.00497 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.52048 * 62.92097 * 27 8 7 51 51 H 1.08993 * 109.51895 * 183.11384 * 27 8 7 52 52 H 1.09006 * 109.48053 * 297.62679 * 28 27 8 53 53 H 1.09004 * 109.48805 * 177.59966 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7214 1.2491 6 1 3.1300 -0.7211 1.2496 7 6 1.5299 -2.1648 1.2493 8 6 1.9942 -2.8621 2.5317 9 1 1.5889 -3.8734 2.5640 10 7 3.4580 -2.9197 2.5556 11 6 4.0830 -3.8776 3.2685 12 8 3.4334 -4.6926 3.8901 13 6 5.5761 -3.9361 3.2934 14 8 6.2257 -3.1207 2.6722 15 7 6.2012 -4.8943 4.0059 16 6 7.6649 -4.9479 4.0352 17 6 8.1150 -6.1161 4.9147 18 6 9.6437 -6.1725 4.9449 19 6 10.0869 -7.3228 5.8118 20 1 9.3518 -7.9511 6.2927 21 6 11.4308 -7.5737 5.9900 22 7 12.3260 -6.8089 5.4040 23 14 11.9803 -9.0000 7.0639 24 1 12.1164 -10.2224 6.2319 25 1 13.2896 -8.6760 7.6854 26 1 10.9719 -9.2354 8.1283 27 6 1.4927 -2.0681 3.7418 28 6 2.0043 -0.6285 3.6453 29 8 1.5628 -0.0487 2.4162 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2494 37 1 1.6765 -0.2073 -2.1393 38 1 3.1300 -0.7209 -1.2496 39 1 1.9288 -2.6922 0.3829 40 1 0.4407 -2.1670 1.2074 41 1 3.9771 -2.2683 2.0586 42 1 5.6819 -5.5458 4.5027 43 1 8.0437 -5.0883 3.0228 44 1 8.0546 -4.0151 4.4428 45 1 7.7362 -5.9756 5.9271 46 1 7.7253 -7.0489 4.5072 47 1 10.0221 -6.3131 3.9325 48 1 10.0336 -5.2396 5.3523 49 1 13.2715 -6.9857 5.5291 50 1 0.4028 -2.0675 3.7507 51 1 1.8652 -2.5264 4.6579 52 1 3.0939 -0.6270 3.6772 53 1 1.6154 -0.0475 4.4817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343297074.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -169.932026 kcal Electronic energy + Delta-G solvation = -30133.929004 eV Core-core repulsion = 26003.597940 eV Total energy + Delta-G solvation = -4130.331064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.06801 -40.96834 -39.56247 -37.47060 -37.15890 -36.22561 -35.21367 -33.06787 -32.66716 -31.27481 -29.02471 -28.15294 -28.12133 -26.65943 -25.55395 -24.66805 -24.22433 -22.38632 -21.65402 -20.93847 -19.83202 -19.52587 -18.51474 -17.91436 -17.30476 -17.20653 -17.07203 -16.80564 -16.53867 -16.29210 -16.20166 -15.70855 -15.41944 -15.09766 -14.85832 -14.67338 -14.51799 -14.28767 -14.03830 -13.80515 -13.75304 -13.53963 -13.49434 -12.99650 -12.88107 -12.77155 -12.76592 -12.65418 -12.56360 -12.52431 -12.41159 -12.13043 -11.88992 -11.71135 -11.61043 -11.56765 -11.49265 -11.24453 -11.08527 -10.73628 -10.57139 -10.55297 -10.33475 -10.21747 -8.19933 -6.30901 0.26287 1.23579 1.41920 1.42652 1.53768 2.06172 2.40960 2.56126 2.76465 3.13964 3.34450 3.51223 3.65971 3.77786 3.90318 4.02059 4.06703 4.07556 4.16648 4.18906 4.29366 4.34894 4.51086 4.59827 4.64312 4.72955 4.75004 4.82338 4.83692 4.85199 4.90229 4.92046 4.99164 5.01812 5.03271 5.11167 5.13710 5.14807 5.20149 5.22306 5.24230 5.36983 5.50877 5.51535 5.56557 5.69847 5.83589 5.83781 6.21697 6.26886 6.27661 6.64619 6.85878 6.86644 7.38507 8.91858 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025730 B = 0.001714 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.962648 B =16332.408816 C =16781.114519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.146 4.146 5 C 0.096 3.904 6 H 0.049 0.951 7 C -0.154 4.154 8 C 0.139 3.861 9 H 0.095 0.905 10 N -0.686 5.686 11 C 0.518 3.482 12 O -0.535 6.535 13 C 0.499 3.501 14 O -0.548 6.548 15 N -0.685 5.685 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.543 4.543 20 H 0.064 0.936 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.262 1.262 27 C -0.161 4.161 28 C 0.060 3.940 29 O -0.379 6.379 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.414 0.586 42 H 0.419 0.581 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.067 0.933 47 H -0.004 1.004 48 H -0.004 1.004 49 H 0.263 0.737 50 H 0.099 0.901 51 H 0.069 0.931 52 H 0.040 0.960 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.805 14.401 -11.232 34.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.203 4.203 5 C 0.038 3.962 6 H 0.067 0.933 7 C -0.191 4.191 8 C 0.036 3.964 9 H 0.113 0.887 10 N -0.340 5.340 11 C 0.298 3.702 12 O -0.412 6.412 13 C 0.280 3.720 14 O -0.427 6.427 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.187 1.187 27 C -0.200 4.200 28 C -0.016 4.016 29 O -0.298 6.298 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.251 0.749 42 H 0.257 0.743 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.117 0.883 51 H 0.087 0.913 52 H 0.059 0.941 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -28.756 14.584 -11.261 34.153 hybrid contribution 1.219 -0.820 0.657 1.609 sum -27.537 13.765 -10.604 32.561 Atomic orbital electron populations 1.21836 0.93366 1.02284 1.01892 1.20546 0.96948 0.95623 0.92744 1.21805 1.00538 0.95290 1.01964 1.21958 1.01158 1.00822 0.96343 1.22176 0.96798 0.91137 0.86065 0.93276 1.22635 1.04058 0.95757 0.96691 1.21303 0.77588 1.01194 0.96360 0.88721 1.45952 1.08383 1.30912 1.48761 1.19918 0.87810 0.82117 0.80370 1.90761 1.67107 1.40117 1.43175 1.20384 0.89077 0.82089 0.80463 1.90754 1.67775 1.40246 1.43895 1.45884 1.08276 1.31106 1.48502 1.21477 0.77604 0.99753 1.00756 1.21641 0.97219 0.96528 0.98987 1.18937 0.91071 0.95716 0.95601 1.21678 0.92281 1.14276 1.29826 0.91761 1.25983 0.97117 0.99424 0.97420 1.70095 1.01473 1.40482 1.45229 0.85443 0.77661 0.78982 0.78921 1.19852 1.20957 1.18661 1.22532 1.03052 0.96160 0.98252 1.22579 0.98243 0.93543 0.87261 1.87931 1.74023 1.54396 1.13460 0.92774 0.92210 0.91768 0.93259 0.91903 0.92818 0.91410 0.91313 0.92714 0.88788 0.87419 0.74851 0.74315 0.91707 0.91772 0.91466 0.91419 0.98514 0.98537 0.92794 0.88300 0.91279 0.94130 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 7.98 71.98 0.57 -0.73 16 2 C -0.06 -0.63 0.63 -52.18 -0.03 -0.66 16 3 C -0.14 -1.68 8.33 71.98 0.60 -1.08 16 4 C -0.15 -1.30 8.12 71.98 0.58 -0.72 16 5 C 0.10 1.20 1.73 30.62 0.05 1.25 16 6 H 0.05 0.69 6.71 -2.39 -0.02 0.68 16 7 C -0.15 -1.60 4.35 30.68 0.13 -1.46 16 8 C 0.14 1.98 2.82 45.11 0.13 2.11 16 9 H 0.09 1.49 7.58 -2.38 -0.02 1.47 16 10 N -0.69 -12.50 4.39 -443.28 -1.95 -14.44 16 11 C 0.52 12.48 7.86 87.27 0.69 13.17 16 12 O -0.53 -14.56 16.14 -3.26 -0.05 -14.62 16 13 C 0.50 14.22 7.89 87.27 0.69 14.90 16 14 O -0.55 -18.03 16.48 -3.26 -0.05 -18.08 16 15 N -0.69 -19.61 5.55 -464.42 -2.58 -22.19 16 16 C 0.13 4.29 5.67 86.38 0.49 4.78 16 17 C -0.11 -4.03 5.27 30.59 0.16 -3.87 16 18 C 0.02 1.25 4.97 29.85 0.15 1.40 16 19 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 23 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 27 C -0.16 -2.20 5.81 30.68 0.18 -2.02 16 28 C 0.06 0.86 6.68 72.01 0.48 1.34 16 29 O -0.38 -5.71 9.06 -148.98 -1.35 -7.06 16 30 H 0.05 0.65 7.68 -2.39 -0.02 0.63 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.50 6.38 -2.39 -0.02 0.49 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.76 7.68 -2.39 -0.02 0.74 16 36 H 0.07 0.51 6.49 -2.39 -0.02 0.49 16 37 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.86 6.57 -2.39 -0.02 0.84 16 40 H 0.11 0.90 6.32 -2.39 -0.02 0.88 16 41 H 0.41 7.22 6.54 -92.71 -0.61 6.61 16 42 H 0.42 10.72 7.94 -92.71 -0.74 9.98 16 43 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 46 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 49 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.04 0.66 7.75 -2.38 -0.02 0.64 16 53 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -66.98 416.12 1.46 -65.52 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.44 Total: 22.29 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.57 Total: -1.14 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -4.24 Total: -92.67 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.46 Total: -39.76 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.98 1.46 -65.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343297074.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.411 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds