Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47304 * 2 1 4 4 C 1.52997 * 109.47153 * 239.99617 * 2 1 3 5 5 C 1.53002 * 109.46632 * 119.99887 * 2 1 3 6 6 N 1.46498 * 109.47039 * 54.26555 * 5 2 1 7 7 C 1.46501 * 120.00053 * 275.80513 * 6 5 2 8 8 C 1.50702 * 109.47486 * 270.00671 * 7 6 5 9 9 H 1.07996 * 119.99606 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99831 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99340 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00148 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47436 * 90.00281 * 12 10 8 14 14 H 1.48505 * 109.47152 * 210.00009 * 12 10 8 15 15 H 1.48500 * 109.47200 * 330.00133 * 12 10 8 16 16 C 1.34774 * 120.00463 * 95.81034 * 6 5 2 17 17 O 1.21279 * 120.00379 * 185.44200 * 16 6 5 18 18 C 1.50700 * 119.99647 * 5.44082 * 16 6 5 19 19 C 1.53006 * 109.47239 * 174.42585 * 18 16 6 20 20 C 1.50700 * 109.47239 * 179.97438 * 19 18 16 21 21 O 1.21275 * 120.00077 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99701 * 179.72187 * 20 19 18 23 23 C 1.47149 * 120.98619 * 359.97438 * 22 20 19 24 24 C 1.53718 * 108.16367 * 129.42813 * 23 22 20 25 25 O 1.42969 * 109.14190 * 52.54211 * 24 23 22 26 26 C 1.42961 * 114.16557 * 297.28758 * 25 24 23 27 27 C 1.47157 * 120.98107 * 180.27241 * 22 20 19 28 28 H 1.09004 * 109.47022 * 300.00378 * 1 2 3 29 29 H 1.08998 * 109.46649 * 59.99957 * 1 2 3 30 30 H 1.08998 * 109.47615 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47220 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47310 * 300.00194 * 3 2 1 33 33 H 1.09004 * 109.47390 * 59.99847 * 3 2 1 34 34 H 1.08997 * 109.47495 * 304.13546 * 4 2 1 35 35 H 1.09002 * 109.46718 * 64.13269 * 4 2 1 36 36 H 1.08994 * 109.47235 * 184.13049 * 4 2 1 37 37 H 1.08994 * 109.47451 * 294.26330 * 5 2 1 38 38 H 1.09002 * 109.46690 * 174.25988 * 5 2 1 39 39 H 1.09000 * 109.46824 * 30.00471 * 7 6 5 40 40 H 1.08999 * 109.47376 * 149.99849 * 7 6 5 41 41 H 0.97001 * 119.99189 * 179.97438 * 11 10 8 42 42 H 1.09000 * 109.47513 * 54.42716 * 18 16 6 43 43 H 1.09001 * 109.47194 * 294.42084 * 18 16 6 44 44 H 1.08992 * 109.46920 * 59.99405 * 19 18 16 45 45 H 1.09001 * 109.46619 * 299.99851 * 19 18 16 46 46 H 1.08999 * 109.68835 * 249.20958 * 23 22 20 47 47 H 1.09002 * 109.68052 * 9.76486 * 23 22 20 48 48 H 1.08993 * 109.65880 * 292.57559 * 24 23 22 49 49 H 1.09004 * 109.48603 * 172.39794 * 24 23 22 50 50 H 1.08997 * 109.51190 * 302.65943 * 26 25 24 51 51 H 1.08999 * 109.55371 * 182.53042 * 26 25 24 52 52 H 1.08999 * 109.67884 * 350.23836 * 27 22 20 53 53 H 1.09003 * 109.68111 * 110.78824 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.4421 -2.0568 1.3203 7 6 0.1133 -2.2341 1.9111 8 6 0.2511 -2.4927 3.3894 9 1 1.2306 -2.5224 3.8432 10 6 -0.8733 -2.6913 4.1622 11 7 -0.7528 -2.9174 5.4522 12 14 -2.5674 -2.6391 3.3772 13 1 -2.9439 -4.0013 2.9212 14 1 -3.5595 -2.1585 4.3722 15 1 -2.5459 -1.7161 2.2141 16 6 2.1145 -3.1225 0.8421 17 8 1.5816 -4.2114 0.8102 18 6 3.5287 -2.9609 0.3471 19 6 4.1049 -4.3332 -0.0076 20 6 5.5188 -4.1716 -0.5032 21 8 6.0169 -3.0676 -0.5660 22 7 6.2319 -5.2545 -0.8707 23 6 5.6516 -6.6047 -0.7964 24 6 5.8721 -7.2963 -2.1514 25 8 7.2572 -7.2193 -2.4971 26 6 7.7428 -5.8865 -2.6752 27 6 7.6162 -5.1223 -1.3522 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6175 -1.7253 -1.2870 35 1 1.7384 -0.1665 -2.1376 36 1 3.1274 -0.7859 -1.2129 37 1 1.7629 -0.1516 2.1363 38 1 3.1251 -0.8111 1.1994 39 1 -0.4776 -1.3318 1.7536 40 1 -0.3843 -3.0812 1.4389 41 1 -1.5439 -3.0567 5.9960 42 1 4.1365 -2.5023 1.1270 43 1 3.5333 -2.3251 -0.5382 44 1 3.4971 -4.7919 -0.7874 45 1 4.1002 -4.9690 0.8778 46 1 6.1434 -7.1728 -0.0068 47 1 4.5840 -6.5344 -0.5883 48 1 5.2774 -6.7994 -2.9178 49 1 5.5725 -8.3419 -2.0790 50 1 7.1548 -5.3845 -3.4435 51 1 8.7891 -5.9170 -2.9793 52 1 7.8502 -4.0698 -1.5122 53 1 8.3023 -5.5437 -0.6174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344469498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -140.416312 kcal Electronic energy + Delta-G solvation = -31576.863605 eV Core-core repulsion = 27447.812439 eV Total energy + Delta-G solvation = -4129.051167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60297 -40.97706 -39.34954 -38.46682 -35.84463 -35.71687 -34.38887 -34.05979 -32.36023 -30.62180 -29.08251 -28.24191 -28.12309 -27.08842 -26.46727 -25.00391 -23.94167 -22.76005 -20.65708 -20.17764 -19.35714 -19.15488 -18.58890 -17.76873 -17.33881 -17.29757 -17.04319 -16.66075 -16.53401 -16.18092 -16.02089 -15.72706 -15.27466 -15.15561 -15.00279 -14.68570 -14.61653 -14.49476 -14.10698 -13.76053 -13.66924 -13.60680 -13.40463 -13.06619 -12.97090 -12.84488 -12.68307 -12.63824 -12.52483 -12.43384 -12.36156 -12.03398 -12.01158 -11.83027 -11.76763 -11.72285 -11.55556 -11.40762 -11.25436 -10.90529 -10.80564 -10.64643 -9.66695 -9.32591 -8.33632 -6.37646 1.31778 1.35043 1.43709 1.46551 1.71105 1.80101 2.30387 2.34989 2.85411 3.00989 3.32542 3.70175 3.77848 3.81682 3.86941 3.90329 3.99713 4.01130 4.08892 4.12462 4.20591 4.26338 4.43430 4.49348 4.55244 4.60268 4.64675 4.72106 4.74428 4.77548 4.81135 4.82696 4.84760 4.89962 4.91306 4.93631 4.95601 4.99116 5.09901 5.11168 5.20190 5.34034 5.35690 5.45089 5.46615 5.55170 5.68342 6.08668 6.17519 6.25480 6.63573 6.71136 6.98811 7.21802 7.40765 8.83428 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003010 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.993311 B = 9299.908136 C =10686.448325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.132 4.132 4 C -0.140 4.140 5 C 0.112 3.888 6 N -0.591 5.591 7 C 0.222 3.778 8 C -0.536 4.536 9 H 0.028 0.972 10 C 0.013 3.987 11 N -0.946 5.946 12 Si 0.942 3.058 13 H -0.275 1.275 14 H -0.276 1.276 15 H -0.238 1.238 16 C 0.506 3.494 17 O -0.590 6.590 18 C -0.121 4.121 19 C -0.118 4.118 20 C 0.523 3.477 21 O -0.569 6.569 22 N -0.618 5.618 23 C 0.065 3.935 24 C 0.048 3.952 25 O -0.394 6.394 26 C 0.052 3.948 27 C 0.073 3.927 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.017 0.983 41 H 0.268 0.732 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.060 0.940 49 H 0.128 0.872 50 H 0.055 0.945 51 H 0.128 0.872 52 H 0.094 0.906 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -0.384 -19.761 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 C -0.190 4.190 4 C -0.197 4.197 5 C -0.011 4.011 6 N -0.320 5.320 7 C 0.100 3.900 8 C -0.574 4.574 9 H 0.046 0.954 10 C -0.185 4.185 11 N -0.586 5.586 12 Si 0.765 3.235 13 H -0.200 1.200 14 H -0.201 1.201 15 H -0.161 1.161 16 C 0.295 3.705 17 O -0.471 6.471 18 C -0.161 4.161 19 C -0.158 4.158 20 C 0.313 3.687 21 O -0.449 6.449 22 N -0.352 5.352 23 C -0.058 4.058 24 C -0.030 4.030 25 O -0.313 6.313 26 C -0.025 4.025 27 C -0.049 4.049 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.124 0.876 48 H 0.078 0.922 49 H 0.146 0.854 50 H 0.074 0.926 51 H 0.146 0.854 52 H 0.112 0.888 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.923 -0.539 -19.666 24.102 hybrid contribution -1.065 -0.087 0.845 1.363 sum 12.858 -0.626 -18.820 22.802 Atomic orbital electron populations 1.22050 0.95243 1.01200 1.01839 1.20953 0.95792 0.96771 0.94719 1.21764 1.01573 0.93096 1.02571 1.21987 1.01015 0.99528 0.97137 1.21872 0.98422 0.82255 0.98506 1.47837 1.18709 1.07732 1.57750 1.19502 0.82082 0.97283 0.91094 1.21624 0.93443 1.48954 0.93400 0.95366 1.25796 1.03634 0.93964 0.95095 1.70055 1.31248 1.50309 1.06970 0.85795 0.78715 0.79581 0.79428 1.20019 1.20124 1.16118 1.21008 0.88808 0.83577 0.77118 1.90608 1.71074 1.27181 1.58258 1.21594 0.91177 0.99058 1.04291 1.21341 0.92095 0.98520 1.03882 1.20733 0.88029 0.83696 0.76265 1.90660 1.72483 1.26013 1.55727 1.48240 1.14669 1.07187 1.65145 1.22796 1.01229 0.81859 0.99902 1.23192 0.82406 1.03187 0.94176 1.87955 1.25930 1.27252 1.90138 1.23064 1.02091 0.82544 0.94820 1.22412 0.82142 1.02973 0.97382 0.93139 0.91124 0.94090 0.91487 0.91018 0.92583 0.94558 0.90914 0.91401 0.91384 0.89052 0.92430 0.96503 0.92336 0.88758 0.86228 0.87153 0.88536 0.89432 0.87602 0.92200 0.85385 0.92623 0.85413 0.88811 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 6.98 71.98 0.50 -3.58 16 2 C -0.08 -2.05 0.85 -52.18 -0.04 -2.09 16 3 C -0.13 -2.58 8.47 71.98 0.61 -1.97 16 4 C -0.14 -3.19 6.84 71.98 0.49 -2.70 16 5 C 0.11 3.56 4.58 86.38 0.40 3.95 16 6 N -0.59 -23.93 2.00 -826.16 -1.65 -25.58 16 7 C 0.22 10.76 3.00 85.63 0.26 11.01 16 8 C -0.54 -31.50 9.94 25.60 0.25 -31.24 16 9 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 10 C 0.01 0.77 5.47 84.65 0.46 1.23 16 11 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 12 Si 0.94 44.42 27.47 68.60 1.88 46.31 16 13 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 16 C 0.51 20.08 6.40 87.66 0.56 20.64 16 17 O -0.59 -27.82 15.54 -3.02 -0.05 -27.87 16 18 C -0.12 -3.63 3.35 29.85 0.10 -3.53 16 19 C -0.12 -3.09 3.38 29.85 0.10 -2.99 16 20 C 0.52 13.16 7.71 87.66 0.68 13.84 16 21 O -0.57 -17.35 15.45 -3.01 -0.05 -17.40 16 22 N -0.62 -12.27 3.01 -816.49 -2.46 -14.73 16 23 C 0.06 0.98 6.57 86.50 0.57 1.55 16 24 C 0.05 0.61 7.00 72.22 0.51 1.12 16 25 O -0.39 -6.32 10.74 -148.98 -1.60 -7.92 16 26 C 0.05 0.69 6.99 72.09 0.50 1.19 16 27 C 0.07 1.22 6.64 86.36 0.57 1.79 16 28 H 0.05 1.47 7.72 -2.39 -0.02 1.46 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.35 5.76 -2.39 -0.01 1.34 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.97 6.74 -2.39 -0.02 0.96 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.43 6.49 -2.39 -0.02 1.41 16 37 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 38 H 0.09 2.54 6.11 -2.39 -0.01 2.53 16 39 H 0.06 2.59 4.37 -2.39 -0.01 2.58 16 40 H 0.02 0.88 6.78 -2.39 -0.02 0.86 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.09 2.84 7.30 -2.39 -0.02 2.83 16 43 H 0.12 3.17 4.63 -2.39 -0.01 3.16 16 44 H 0.11 2.66 7.57 -2.39 -0.02 2.64 16 45 H 0.10 2.63 8.00 -2.39 -0.02 2.61 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.11 1.55 6.06 -2.39 -0.01 1.54 16 48 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.13 1.09 8.14 -2.39 -0.02 1.08 16 52 H 0.09 1.74 7.08 -2.39 -0.02 1.72 16 53 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.52 401.73 3.73 -74.79 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.84 Total: 23.73 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.52 Total: 8.23 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -3.81 Total: -99.87 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.69 Total: -53.19 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Total: -78.52 3.73 -74.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344469498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.624 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds