Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48503 * 109.46711 * 269.99997 * 3 2 1 5 5 H 1.48497 * 109.46924 * 29.99500 * 3 2 1 6 6 H 1.48493 * 109.47300 * 149.99735 * 3 2 1 7 7 C 1.38813 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99483 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00185 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00150 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46915 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.49266 * 55.06411 * 12 11 10 14 14 C 1.53034 * 109.49654 * 175.16075 * 12 11 10 15 15 C 1.53040 * 109.54031 * 181.31982 * 14 12 11 16 16 C 1.53625 * 109.23668 * 298.51340 * 15 14 12 17 17 N 1.46919 * 108.54818 * 54.85336 * 16 15 14 18 18 C 1.34784 * 120.63158 * 126.36655 * 17 16 15 19 19 O 1.21276 * 120.00051 * 179.72462 * 18 17 16 20 20 C 1.50699 * 119.99728 * 359.72283 * 18 17 16 21 21 O 1.42899 * 109.46785 * 179.97438 * 20 18 17 22 22 C 1.42905 * 113.99778 * 179.97438 * 21 20 18 23 23 C 1.52999 * 109.46728 * 179.97438 * 22 21 20 24 24 H 1.09007 * 109.87243 * 53.99740 * 23 22 21 25 25 C 1.54100 * 109.87645 * 175.00264 * 23 22 21 26 26 C 1.54806 * 104.18981 * 121.45668 * 25 23 22 27 27 C 1.54993 * 102.09292 * 20.87837 * 26 25 23 28 28 O 1.43740 * 109.88305 * 292.83317 * 23 22 21 29 29 C 1.46922 * 118.74005 * 306.09535 * 17 16 15 30 30 H 0.96997 * 119.99811 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00142 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47418 * 59.99634 * 10 9 7 33 33 H 1.09004 * 109.46838 * 299.99731 * 10 9 7 34 34 H 1.08999 * 109.47030 * 60.00196 * 11 10 9 35 35 H 1.08998 * 109.46608 * 299.99507 * 11 10 9 36 36 H 1.09007 * 109.45901 * 301.33968 * 14 12 11 37 37 H 1.08995 * 109.46074 * 61.29678 * 14 12 11 38 38 H 1.09001 * 109.49617 * 58.58101 * 15 14 12 39 39 H 1.08999 * 109.49831 * 178.68280 * 15 14 12 40 40 H 1.09006 * 109.74066 * 295.11632 * 16 15 14 41 41 H 1.09004 * 109.66367 * 174.55231 * 16 15 14 42 42 H 1.08997 * 109.47198 * 59.99898 * 20 18 17 43 43 H 1.08997 * 109.47040 * 299.99932 * 20 18 17 44 44 H 1.09000 * 109.47187 * 300.00233 * 22 21 20 45 45 H 1.09001 * 109.46558 * 60.00281 * 22 21 20 46 46 H 1.09002 * 110.49208 * 240.13435 * 25 23 22 47 47 H 1.09003 * 110.49045 * 2.77798 * 25 23 22 48 48 H 1.09001 * 110.90996 * 139.08028 * 26 25 23 49 49 H 1.09003 * 110.90581 * 262.64317 * 26 25 23 50 50 H 1.08997 * 110.61713 * 81.47900 * 27 26 25 51 51 H 1.08998 * 110.61707 * 204.47716 * 27 26 25 52 52 H 1.08998 * 109.59320 * 173.64531 * 29 17 16 53 53 H 1.09001 * 109.58915 * 294.07347 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1911 0.0011 12 6 6.3815 -3.5162 0.0017 13 1 6.0538 -4.1258 -0.8404 14 6 7.8817 -3.2399 -0.1200 15 6 8.6455 -4.5657 -0.1525 16 6 8.3988 -5.3243 1.1604 17 7 6.9492 -5.4678 1.3519 18 6 6.4017 -6.6806 1.5668 19 8 5.2043 -6.7853 1.7284 20 6 7.2774 -7.9064 1.6062 21 8 6.4703 -9.0607 1.8469 22 6 7.2072 -10.2838 1.9027 23 6 6.2472 -11.4461 2.1642 24 1 5.4489 -11.4415 1.4220 25 6 7.0127 -12.7821 2.1019 26 6 6.7815 -13.4172 3.4946 27 6 5.5103 -12.6767 3.9822 28 8 5.6914 -11.3334 3.4849 29 6 6.1085 -4.2636 1.3108 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0423 -0.8891 33 1 3.8485 -3.0425 0.8909 34 1 5.8797 -1.6196 0.8911 35 1 5.8796 -1.6196 -0.8890 36 1 8.0757 -2.6864 -1.0389 37 1 8.2130 -2.6509 0.7352 38 1 8.2970 -5.1657 -0.9932 39 1 9.7118 -4.3687 -0.2628 40 1 8.8239 -4.7653 1.9940 41 1 8.8597 -6.3106 1.1063 42 1 8.0110 -7.8032 2.4056 43 1 7.7928 -8.0155 0.6520 44 1 7.7205 -10.4423 0.9542 45 1 7.9400 -10.2300 2.7079 46 1 6.6033 -13.4203 1.3188 47 1 8.0753 -12.6056 1.9347 48 1 6.5988 -14.4883 3.4082 49 1 7.6249 -13.2206 4.1566 50 1 4.6153 -13.1273 3.5532 51 1 5.4584 -12.6793 5.0709 52 1 5.0577 -4.5498 1.3559 53 1 6.3506 -3.6198 2.1564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753562685.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -147.958532 kcal Electronic energy + Delta-G solvation = -29713.334732 eV Core-core repulsion = 25583.956510 eV Total energy + Delta-G solvation = -4129.378222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37201 -40.49571 -39.17268 -38.13615 -37.10992 -35.06873 -33.55792 -33.18045 -32.59088 -31.83984 -29.96303 -28.66394 -26.36077 -25.84386 -25.48248 -23.83795 -23.01258 -22.32265 -22.01300 -21.42635 -20.08916 -19.64368 -18.60851 -17.83608 -17.44207 -17.28223 -16.87760 -16.68184 -16.50217 -16.33195 -16.03260 -15.82048 -15.36484 -15.21195 -14.95327 -14.80999 -14.54958 -14.51547 -14.28358 -13.98071 -13.88647 -13.70978 -13.14625 -13.11679 -12.91016 -12.77850 -12.64038 -12.55905 -12.39189 -12.27196 -12.08398 -12.06232 -11.94155 -11.86097 -11.75512 -11.58553 -11.56561 -11.21006 -10.98849 -10.77429 -10.73152 -10.67921 -9.67418 -9.34971 -8.06330 -5.41731 1.34955 1.41214 1.48777 1.52186 1.68279 2.46293 2.75532 2.95127 3.23790 3.44558 3.51443 3.62272 3.82998 3.86737 3.90166 3.93039 3.95660 4.07950 4.11364 4.16617 4.21864 4.27556 4.30729 4.37524 4.41993 4.45973 4.48245 4.50056 4.63026 4.66086 4.71037 4.79484 4.85783 4.87504 4.89530 4.92464 4.95446 5.04908 5.05979 5.14924 5.18908 5.22162 5.29579 5.35937 5.49838 5.52936 5.70580 5.92276 6.11324 6.17387 6.39925 7.03668 7.13648 7.77918 8.01186 9.15606 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.001929 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.018046 B =14511.667582 C =16139.134366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.246 4.246 8 H 0.045 0.955 9 N -0.757 5.757 10 C 0.150 3.850 11 C -0.108 4.108 12 C -0.086 4.086 13 H 0.061 0.939 14 C -0.111 4.111 15 C -0.129 4.129 16 C 0.097 3.903 17 N -0.607 5.607 18 C 0.499 3.501 19 O -0.585 6.585 20 C 0.052 3.948 21 O -0.401 6.401 22 C 0.060 3.940 23 C 0.065 3.935 24 H 0.058 0.942 25 C -0.141 4.141 26 C -0.148 4.148 27 C 0.030 3.970 28 O -0.403 6.403 29 C 0.114 3.886 30 H 0.260 0.740 31 H 0.369 0.631 32 H 0.012 0.988 33 H 0.012 0.988 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.098 0.902 52 H 0.053 0.947 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.972 -25.294 3.375 41.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.171 1.171 7 C -0.377 4.377 8 H 0.063 0.937 9 N -0.403 5.403 10 C 0.024 3.976 11 C -0.147 4.147 12 C -0.106 4.106 13 H 0.079 0.921 14 C -0.149 4.149 15 C -0.167 4.167 16 C -0.024 4.024 17 N -0.341 5.341 18 C 0.288 3.712 19 O -0.464 6.464 20 C -0.026 4.026 21 O -0.320 6.320 22 C -0.016 4.016 23 C 0.008 3.992 24 H 0.076 0.924 25 C -0.178 4.178 26 C -0.185 4.185 27 C -0.046 4.046 28 O -0.323 6.323 29 C -0.008 4.008 30 H 0.068 0.932 31 H 0.203 0.797 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.102 0.898 50 H 0.079 0.921 51 H 0.116 0.884 52 H 0.072 0.928 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 31.912 -25.280 3.599 40.871 hybrid contribution -0.864 0.904 -0.071 1.253 sum 31.048 -24.375 3.527 39.631 Atomic orbital electron populations 1.69921 1.07396 1.26969 1.59264 1.25690 0.96340 1.01874 1.02064 0.85230 0.78626 0.78418 0.78399 1.19889 1.21903 1.17135 1.19037 0.83024 0.93373 1.42260 0.93737 1.42667 1.02383 1.04227 1.90999 1.20851 0.92302 0.87205 0.97233 1.21677 0.92058 0.97635 1.03294 1.21353 0.97545 0.95053 0.96622 0.92084 1.21584 0.91518 0.98309 1.03476 1.22002 1.02159 0.95727 0.96825 1.22303 0.77454 1.03535 0.99118 1.48210 1.09834 1.05361 1.70661 1.21161 0.88471 0.85644 0.75933 1.90749 1.18417 1.86507 1.50719 1.22371 0.92321 0.83368 1.04589 1.88064 1.35206 1.15148 1.93620 1.23030 0.93834 0.82347 1.02407 1.22955 0.95633 0.95315 0.85337 0.92443 1.22936 1.02358 0.93675 0.98837 1.23136 0.97865 1.01355 0.96188 1.23811 0.98288 0.81976 1.00555 1.88997 1.84268 1.28088 1.30909 1.21638 0.95086 0.85747 0.98376 0.93158 0.79701 0.97040 0.96977 0.90726 0.90247 0.90509 0.90470 0.91889 0.87316 0.89200 0.86960 0.87203 0.86725 0.88729 0.91086 0.88874 0.88043 0.88109 0.89783 0.92081 0.88400 0.92818 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.52 13.97 21.65 0.30 -66.22 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 47.06 27.74 68.60 1.90 48.96 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 7 C -0.25 -15.33 10.47 84.03 0.88 -14.45 16 8 H 0.04 3.10 8.06 -2.91 -0.02 3.07 16 9 N -0.76 -38.40 5.41 -343.44 -1.86 -40.25 16 10 C 0.15 6.39 6.02 86.38 0.52 6.91 16 11 C -0.11 -3.17 4.80 30.60 0.15 -3.02 16 12 C -0.09 -2.05 2.34 -10.72 -0.03 -2.07 16 13 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 14 C -0.11 -1.63 5.16 30.62 0.16 -1.47 16 15 C -0.13 -1.23 6.10 30.82 0.19 -1.04 16 16 C 0.10 0.99 6.37 86.51 0.55 1.54 16 17 N -0.61 -13.36 2.97 -818.08 -2.43 -15.79 16 18 C 0.50 14.04 7.78 87.66 0.68 14.72 16 19 O -0.58 -24.64 15.91 16.02 0.25 -24.38 16 20 C 0.05 0.92 4.76 71.24 0.34 1.26 16 21 O -0.40 -10.15 9.87 -126.82 -1.25 -11.40 16 22 C 0.06 0.90 5.39 71.98 0.39 1.29 16 23 C 0.07 1.13 3.71 30.97 0.11 1.25 16 24 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 25 C -0.14 -1.17 6.64 31.58 0.21 -0.96 16 26 C -0.15 -1.20 7.15 31.89 0.23 -0.98 16 27 C 0.03 0.44 7.72 72.66 0.56 1.00 16 28 O -0.40 -9.57 11.18 -147.43 -1.65 -11.21 16 29 C 0.11 3.13 5.32 86.36 0.46 3.59 16 30 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 31 H 0.37 17.18 5.53 -92.70 -0.51 16.67 16 32 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.01 0.56 6.70 -2.38 -0.02 0.55 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.11 0.44 5.93 -2.38 -0.01 0.43 16 42 H 0.11 1.18 7.93 -2.39 -0.02 1.16 16 43 H 0.12 1.11 7.70 -2.39 -0.02 1.09 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.10 0.42 7.70 -2.39 -0.02 0.40 16 48 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.05 1.99 5.72 -2.39 -0.01 1.98 16 53 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -94.26 413.14 1.45 -92.81 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.31 Total: 23.73 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.87 Total: 3.75 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -3.98 Total: -122.26 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -2.64 Total: -47.00 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.96 kcal Total: -94.26 1.45 -92.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753562685.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.145 kcal (2) G-P(sol) polarization free energy of solvation -94.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds