Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48503 * 109.47293 * 239.99836 * 3 2 1 5 5 H 1.48497 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46986 * 120.00047 * 3 2 1 7 7 C 1.38813 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99826 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00411 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00117 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47696 * 34.99891 * 10 9 7 12 12 C 1.53002 * 109.47204 * 155.00235 * 10 9 7 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 16 16 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00270 * 154.99797 * 16 14 13 18 18 O 1.21288 * 119.99713 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00270 * 180.02562 * 17 16 14 20 20 C 1.52996 * 109.47151 * 179.97438 * 19 17 16 21 21 O 1.42898 * 109.46986 * 179.97438 * 20 19 17 22 22 C 1.42906 * 114.00138 * 180.02562 * 21 20 19 23 23 C 1.53181 * 109.54174 * 269.55789 * 22 21 20 24 24 C 1.53091 * 109.15985 * 183.15228 * 23 22 21 25 25 O 1.42899 * 109.41575 * 57.60755 * 24 23 22 26 26 C 1.42901 * 114.10050 * 298.83888 * 25 24 23 27 27 C 1.53095 * 109.41153 * 61.16212 * 26 25 24 28 28 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 29 29 C 1.52997 * 109.47244 * 274.99987 * 10 9 7 30 30 H 0.96998 * 119.99451 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99530 * 359.97438 * 9 7 2 32 32 H 1.08992 * 109.47063 * 59.99836 * 12 10 9 33 33 H 1.09004 * 109.46733 * 299.99549 * 12 10 9 34 34 H 1.09002 * 109.47398 * 59.99826 * 13 12 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 13 12 10 36 36 H 0.97000 * 119.99491 * 335.00093 * 16 14 13 37 37 H 1.08995 * 109.47106 * 300.00577 * 19 17 16 38 38 H 1.09005 * 109.46927 * 60.00515 * 19 17 16 39 39 H 1.08995 * 109.47729 * 300.00370 * 20 19 17 40 40 H 1.09007 * 109.47037 * 60.00867 * 20 19 17 41 41 H 1.08999 * 109.53768 * 29.82435 * 22 21 20 42 42 H 1.09001 * 109.51996 * 303.05467 * 23 22 21 43 43 H 1.08997 * 109.52336 * 63.24579 * 23 22 21 44 44 H 1.09005 * 109.47926 * 297.62676 * 24 23 22 45 45 H 1.09003 * 109.47637 * 177.59480 * 24 23 22 46 46 H 1.09001 * 109.48148 * 301.17996 * 26 25 24 47 47 H 1.09002 * 109.49102 * 181.14795 * 26 25 24 48 48 H 1.08999 * 109.52129 * 182.48915 * 27 26 25 49 49 H 1.08992 * 109.57616 * 62.32720 * 27 26 25 50 50 H 1.09000 * 109.47486 * 180.02562 * 28 14 13 51 51 H 1.09002 * 109.46716 * 60.00091 * 28 14 13 52 52 H 1.09002 * 109.47153 * 300.00242 * 29 10 9 53 53 H 1.09001 * 109.47289 * 60.00326 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 1.1807 -4.7522 0.6090 13 6 1.9459 -6.0771 0.6096 14 6 2.3103 -6.4562 -0.8271 15 1 1.3998 -6.5627 -1.4169 16 7 3.0425 -7.7251 -0.8267 17 6 3.0339 -8.5085 -1.9234 18 8 2.4204 -8.1627 -2.9109 19 6 3.7866 -9.8141 -1.9228 20 6 3.6142 -10.5028 -3.2781 21 8 4.3284 -11.7404 -3.2777 22 6 4.2327 -12.4672 -4.5044 23 6 3.0297 -13.4138 -4.4467 24 6 2.9814 -14.2438 -5.7321 25 8 4.2085 -14.9610 -5.8809 26 6 5.3631 -14.1259 -5.9879 27 6 5.5072 -13.2911 -4.7126 28 6 3.1875 -5.3609 -1.4368 29 6 2.4218 -4.0357 -1.4375 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0002 32 1 0.2701 -4.8584 0.0196 33 1 0.9215 -4.4823 1.6328 34 1 2.8564 -5.9706 1.1993 35 1 1.3208 -6.8576 1.0435 36 1 3.5334 -8.0015 -0.0371 37 1 4.8446 -9.6233 -1.7437 38 1 3.3952 -10.4587 -1.1358 39 1 2.5561 -10.6935 -3.4568 40 1 4.0053 -9.8583 -4.0655 41 1 4.1101 -11.7695 -5.3328 42 1 3.1295 -14.0776 -3.5879 43 1 2.1126 -12.8320 -4.3540 44 1 2.8411 -13.5822 -6.5870 45 1 2.1522 -14.9493 -5.6783 46 1 5.2539 -13.4627 -6.8460 47 1 6.2498 -14.7462 -6.1183 48 1 6.3618 -12.6216 -4.8102 49 1 5.6575 -13.9516 -3.8588 50 1 3.4467 -5.6308 -2.4606 51 1 4.0980 -5.2544 -0.8471 52 1 1.5111 -4.1419 -2.0270 53 1 3.0468 -3.2554 -1.8718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753586840.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -169.319714 kcal Electronic energy + Delta-G solvation = -29285.706747 eV Core-core repulsion = 25155.402234 eV Total energy + Delta-G solvation = -4130.304512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.16748 -40.56918 -39.37430 -38.42821 -36.37641 -34.66151 -34.02725 -32.64916 -32.12444 -31.74503 -31.66640 -28.90356 -26.00294 -25.38636 -24.72760 -24.24708 -23.60462 -22.35048 -21.53092 -21.29221 -20.74917 -19.13295 -18.51256 -17.51761 -17.41689 -17.27110 -16.95113 -16.81693 -16.68384 -16.01584 -15.81238 -15.73744 -15.37705 -15.17273 -15.08297 -14.85904 -14.69242 -14.36309 -14.22715 -13.94196 -13.48226 -13.36653 -13.15980 -13.08812 -12.98022 -12.78821 -12.70273 -12.42078 -12.34518 -12.29931 -12.17486 -12.10201 -12.03846 -11.81589 -11.66135 -11.45981 -11.38083 -11.20705 -10.93911 -10.81119 -10.68842 -10.52340 -10.02499 -8.99255 -7.93263 -5.21430 1.46644 1.49599 1.55607 1.61915 1.94958 2.56648 2.71818 2.94254 3.39459 3.68767 3.71832 3.73077 3.79189 3.85294 3.90176 3.95790 4.02497 4.05579 4.16787 4.24304 4.29732 4.35968 4.37475 4.40616 4.48021 4.52054 4.59415 4.60535 4.65620 4.68347 4.74196 4.78791 4.80014 4.85132 4.88069 5.00518 5.02572 5.09607 5.12079 5.14559 5.18135 5.25287 5.27865 5.47932 5.54672 5.55273 5.64043 6.14571 6.19890 6.29356 6.58437 7.27664 7.34785 8.12770 8.34940 9.30183 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.001477 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.370799 B =18957.778940 C =19187.959231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.048 0.952 12 C -0.114 4.114 13 C -0.105 4.105 14 C 0.152 3.848 15 H 0.063 0.937 16 N -0.708 5.708 17 C 0.514 3.486 18 O -0.589 6.589 19 C -0.128 4.128 20 C 0.079 3.921 21 O -0.389 6.389 22 C 0.083 3.917 23 C -0.176 4.176 24 C 0.061 3.939 25 O -0.402 6.402 26 C 0.060 3.940 27 C -0.149 4.149 28 C -0.112 4.112 29 C -0.123 4.123 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.419 0.581 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.108 0.892 46 H 0.061 0.939 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.047 0.953 51 H 0.077 0.923 52 H 0.037 0.963 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -32.198 -5.691 34.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.153 4.153 13 C -0.143 4.143 14 C 0.047 3.953 15 H 0.081 0.919 16 N -0.360 5.360 17 C 0.302 3.698 18 O -0.469 6.469 19 C -0.168 4.168 20 C 0.002 3.998 21 O -0.309 6.309 22 C 0.025 3.975 23 C -0.214 4.214 24 C -0.016 4.016 25 O -0.321 6.321 26 C -0.016 4.016 27 C -0.187 4.187 28 C -0.151 4.151 29 C -0.164 4.164 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.257 0.743 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.132 0.868 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.066 0.934 51 H 0.095 0.905 52 H 0.056 0.944 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.466 -32.096 -6.200 34.642 hybrid contribution -0.347 1.818 -0.112 1.854 sum 11.118 -30.278 -6.313 32.867 Atomic orbital electron populations 1.69818 1.06604 1.25972 1.59782 1.25546 0.96353 1.01041 1.04035 0.85244 0.77204 0.79378 0.78147 1.20732 1.22287 1.20159 1.19606 0.91406 0.85362 1.40709 0.90697 1.42666 1.05428 1.01146 1.88619 1.20496 0.94560 0.85027 0.93530 0.93390 1.21645 0.98378 0.94285 1.00976 1.21648 1.01741 0.96497 0.94443 1.20826 0.94402 0.82440 0.97634 0.91910 1.45916 1.52814 1.20528 1.16740 1.20929 0.80320 0.86119 0.82450 1.90730 1.45874 1.75336 1.34977 1.21426 1.03317 0.92708 0.99334 1.22100 0.95931 0.84689 0.97116 1.87829 1.73026 1.33553 1.36447 1.22249 0.95821 0.92828 0.86590 1.22698 0.99210 0.99347 1.00130 1.22665 0.87073 0.96108 0.95710 1.87920 1.15629 1.34735 1.93852 1.22737 0.89091 0.94075 0.95707 1.22281 0.97245 0.99284 0.99870 1.21770 0.99004 0.93863 1.00462 1.22041 0.98939 0.95995 0.99445 0.94156 0.79758 0.92992 0.91470 0.89287 0.89304 0.74329 0.85900 0.85792 0.93369 0.93478 0.91734 0.90780 0.90432 0.92194 0.87389 0.92035 0.86753 0.89276 0.90740 0.93424 0.90469 0.94406 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.24 -13.35 9.93 84.03 0.83 -12.51 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.52 5.12 -322.95 -1.65 -39.17 16 10 C 0.17 6.61 2.77 44.99 0.12 6.74 16 11 H 0.05 1.83 8.08 -2.39 -0.02 1.82 16 12 C -0.11 -3.47 5.39 30.60 0.16 -3.31 16 13 C -0.10 -2.20 5.39 30.59 0.16 -2.03 16 14 C 0.15 3.61 2.45 44.99 0.11 3.72 16 15 H 0.06 1.85 7.58 -2.39 -0.02 1.84 16 16 N -0.71 -12.15 5.08 -442.53 -2.25 -14.39 16 17 C 0.51 10.58 7.79 87.66 0.68 11.27 16 18 O -0.59 -18.06 15.65 -3.05 -0.05 -18.10 16 19 C -0.13 -1.70 6.07 29.85 0.18 -1.52 16 20 C 0.08 1.34 5.04 71.98 0.36 1.70 16 21 O -0.39 -6.45 10.00 -148.98 -1.49 -7.94 16 22 C 0.08 1.15 2.70 30.72 0.08 1.24 16 23 C -0.18 -2.26 5.76 30.69 0.18 -2.09 16 24 C 0.06 0.70 6.84 72.01 0.49 1.19 16 25 O -0.40 -5.89 10.76 -148.98 -1.60 -7.50 16 26 C 0.06 0.61 6.84 72.01 0.49 1.10 16 27 C -0.15 -1.70 5.79 30.69 0.18 -1.52 16 28 C -0.11 -3.13 5.50 30.61 0.17 -2.96 16 29 C -0.12 -4.52 5.51 30.61 0.17 -4.35 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.42 4.00 8.60 -92.71 -0.80 3.20 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.05 0.90 7.95 -2.39 -0.02 0.88 16 40 H 0.05 0.90 8.04 -2.38 -0.02 0.88 16 41 H 0.06 0.87 7.79 -2.39 -0.02 0.86 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 0.97 8.00 -2.39 -0.02 0.95 16 44 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 45 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -73.89 418.21 -0.52 -74.40 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.64 Total: 31.38 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.85 Total: -7.37 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -3.62 Total: -113.42 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -3.14 Total: -33.54 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.89 -0.52 -74.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753586840.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.916 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds