Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00060 * 2 1 4 4 H 1.09001 * 109.52470 * 330.00389 * 3 2 1 5 5 C 1.53093 * 109.51976 * 90.12249 * 3 2 1 6 6 O 1.42906 * 109.41815 * 177.51463 * 5 3 2 7 7 C 1.42905 * 114.09411 * 298.84816 * 6 5 3 8 8 C 1.53089 * 109.41673 * 61.15761 * 7 6 5 9 9 C 1.53174 * 109.52687 * 209.87229 * 3 2 1 10 10 H 1.08999 * 109.54243 * 302.98792 * 9 3 2 11 11 C 1.53004 * 109.54085 * 63.24530 * 9 3 2 12 12 C 1.50695 * 109.47026 * 184.99824 * 11 9 3 13 13 O 1.21283 * 120.00072 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99958 * 180.02562 * 12 11 9 15 15 C 1.46503 * 120.00027 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46218 * 59.99751 * 15 14 12 17 17 C 1.53044 * 109.45908 * 300.02725 * 15 14 12 18 18 C 1.53167 * 109.32460 * 301.35975 * 17 15 14 19 19 N 1.46925 * 108.76744 * 305.35319 * 18 17 15 20 20 C 1.36933 * 120.63010 * 233.58901 * 19 18 17 21 21 H 1.08002 * 120.00293 * 27.69990 * 20 19 18 22 22 C 1.38820 * 119.99927 * 207.69997 * 20 19 18 23 23 N 1.31622 * 119.99948 * 17.35382 * 22 20 19 24 24 Si 1.86797 * 119.99728 * 197.35662 * 22 20 19 25 25 H 1.48498 * 109.47422 * 60.00234 * 24 22 20 26 26 H 1.48507 * 109.46977 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47438 * 299.99756 * 24 22 20 28 28 C 1.46929 * 118.73997 * 53.61395 * 19 18 17 29 29 C 1.53036 * 109.45912 * 179.97438 * 15 14 12 30 30 H 1.09003 * 109.46587 * 59.99765 * 1 2 3 31 31 H 1.08995 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47142 * 299.99898 * 1 2 3 33 33 H 1.09001 * 109.48544 * 297.50095 * 5 3 2 34 34 H 1.09002 * 109.48243 * 57.52523 * 5 3 2 35 35 H 1.09003 * 109.47731 * 181.13803 * 7 6 5 36 36 H 1.08997 * 109.48248 * 301.16662 * 7 6 5 37 37 H 1.08991 * 109.52729 * 62.29463 * 8 7 6 38 38 H 1.09009 * 109.52324 * 182.42620 * 8 7 6 39 39 H 1.08997 * 109.47302 * 305.00569 * 11 9 3 40 40 H 1.09001 * 109.46753 * 65.00269 * 11 9 3 41 41 H 0.97002 * 120.00357 * 359.97438 * 14 12 11 42 42 H 1.09009 * 109.46923 * 60.00326 * 16 15 14 43 43 H 1.08997 * 109.47529 * 179.97438 * 16 15 14 44 44 H 1.08999 * 109.47627 * 300.00618 * 16 15 14 45 45 H 1.09002 * 109.49654 * 61.29507 * 17 15 14 46 46 H 1.08997 * 109.49765 * 181.39774 * 17 15 14 47 47 H 1.09003 * 109.58619 * 185.56917 * 18 17 15 48 48 H 1.09002 * 109.70714 * 65.20820 * 18 17 15 49 49 H 0.96999 * 119.99922 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.58704 * 186.60218 * 28 19 18 51 51 H 1.09003 * 109.58751 * 66.17674 * 28 19 18 52 52 H 1.09001 * 109.49733 * 178.60545 * 29 15 14 53 53 H 1.09000 * 109.49840 * 298.69711 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3457 2.0002 -0.5136 5 6 2.2212 1.7715 1.4429 6 8 2.8553 3.0522 1.4407 7 6 4.1447 3.0636 0.8245 8 6 4.0110 2.6496 -0.6432 9 6 3.3621 1.2640 -0.7190 10 1 4.0096 0.5321 -0.2362 11 6 3.1510 0.8756 -2.1838 12 6 4.4887 0.7155 -2.8588 13 8 5.5105 0.8939 -2.2302 14 7 4.5498 0.3739 -4.1612 15 6 5.8503 0.2177 -4.8173 16 6 6.6499 -0.8781 -4.1098 17 6 6.6202 1.5384 -4.7442 18 6 5.8014 2.6406 -5.4230 19 7 5.4699 2.2105 -6.7882 20 6 5.7708 3.0047 -7.8624 21 1 6.6027 3.6914 -7.8100 22 6 5.0066 2.9271 -9.0187 23 7 3.8155 2.3680 -8.9840 24 14 5.6687 3.6161 -10.6237 25 1 6.9297 2.9174 -10.9796 26 1 4.6679 3.4096 -11.7013 27 1 5.9350 5.0685 -10.4665 28 6 4.8088 0.9122 -6.9790 29 6 5.6388 -0.1707 -6.2824 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2570 1.8443 1.9461 34 1 2.8520 1.0543 1.9681 35 1 4.5661 4.0672 0.8822 36 1 4.8009 2.3635 1.3415 37 1 3.3877 3.3720 -1.1702 38 1 4.9985 2.6160 -1.1037 39 1 2.6032 -0.0653 -2.2349 40 1 2.5807 1.6558 -2.6880 41 1 3.7327 0.2308 -4.6639 42 1 6.1015 -1.8188 -4.1613 43 1 7.6174 -0.9949 -4.5980 44 1 6.8002 -0.6020 -3.0661 45 1 6.7908 1.8028 -3.7006 46 1 7.5776 1.4301 -5.2539 47 1 6.3865 3.5595 -5.4613 48 1 4.8834 2.8151 -4.8618 49 1 3.2814 2.3141 -9.7919 50 1 4.7391 0.6907 -8.0440 51 1 3.8099 0.9434 -6.5439 52 1 6.6055 -0.2629 -6.7775 53 1 5.1110 -1.1229 -6.3338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754627002.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -133.571818 kcal Electronic energy + Delta-G solvation = -32183.509588 eV Core-core repulsion = 28054.755220 eV Total energy + Delta-G solvation = -4128.754367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61960 -40.65788 -38.85336 -38.24604 -36.16465 -35.08234 -33.68698 -32.49045 -31.60184 -31.36844 -29.60443 -29.04513 -27.47679 -25.93245 -24.85809 -24.08278 -23.92255 -22.69938 -21.68190 -21.05390 -20.09259 -18.76805 -18.22517 -17.73292 -17.32248 -16.86497 -16.77164 -16.55429 -16.23494 -15.97071 -15.83633 -15.58628 -15.29009 -15.05672 -14.82992 -14.70853 -14.52461 -14.19440 -14.02032 -13.83306 -13.57787 -13.32091 -13.23867 -13.02917 -12.94269 -12.82533 -12.62018 -12.53708 -12.49317 -12.27931 -12.17569 -11.99584 -11.97227 -11.76494 -11.68666 -11.41082 -11.28871 -11.26678 -11.02314 -10.52675 -10.43887 -10.08929 -9.83642 -8.65051 -7.87239 -5.30698 1.47130 1.48937 1.55559 1.81143 2.34091 2.51772 2.57650 3.08036 3.27354 3.59493 3.64234 3.71924 3.80332 3.85967 4.00190 4.06061 4.13141 4.17141 4.24881 4.33351 4.44009 4.48720 4.49922 4.52604 4.59050 4.65574 4.72878 4.74644 4.75857 4.80290 4.85536 4.87884 4.91020 4.92233 4.93548 5.00478 5.04182 5.16894 5.23056 5.24336 5.28430 5.32106 5.38902 5.50222 5.64353 5.73799 5.81527 6.01631 6.32639 6.39812 6.75631 7.16700 7.42801 7.87401 8.38947 9.18287 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002808 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.585596 B = 9969.016716 C =10113.525372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.393 6.393 3 C 0.065 3.935 4 H 0.074 0.926 5 C 0.042 3.958 6 O -0.392 6.392 7 C 0.060 3.940 8 C -0.149 4.149 9 C -0.061 4.061 10 H 0.073 0.927 11 C -0.128 4.128 12 C 0.516 3.484 13 O -0.563 6.563 14 N -0.711 5.711 15 C 0.187 3.813 16 C -0.149 4.149 17 C -0.129 4.129 18 C 0.155 3.845 19 N -0.606 5.606 20 C -0.266 4.266 21 H 0.059 0.941 22 C -0.044 4.044 23 N -0.928 5.928 24 Si 0.963 3.037 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.180 3.820 29 C -0.132 4.132 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.403 0.597 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.010 0.990 49 H 0.250 0.750 50 H 0.055 0.945 51 H 0.009 0.991 52 H 0.064 0.936 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -6.488 18.783 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.313 6.313 3 C 0.007 3.993 4 H 0.092 0.908 5 C -0.035 4.035 6 O -0.311 6.311 7 C -0.016 4.016 8 C -0.187 4.187 9 C -0.080 4.080 10 H 0.092 0.908 11 C -0.168 4.168 12 C 0.304 3.696 13 O -0.443 6.443 14 N -0.362 5.362 15 C 0.101 3.899 16 C -0.207 4.207 17 C -0.169 4.169 18 C 0.029 3.971 19 N -0.330 5.330 20 C -0.397 4.397 21 H 0.076 0.924 22 C -0.240 4.240 23 N -0.574 5.574 24 Si 0.791 3.209 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.054 3.946 29 C -0.171 4.171 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.114 0.886 41 H 0.239 0.761 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.060 0.940 50 H 0.073 0.927 51 H 0.027 0.973 52 H 0.083 0.917 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.447 -6.372 19.162 20.677 hybrid contribution -0.262 0.450 -1.617 1.699 sum -4.709 -5.922 17.545 19.106 Atomic orbital electron populations 1.23027 0.79501 1.03973 1.00948 1.87902 1.21335 1.26937 1.95080 1.22758 0.94742 0.85329 0.96460 0.90781 1.23081 0.99130 0.85283 0.96011 1.87921 1.32896 1.30771 1.79553 1.22691 0.84259 1.03034 0.91613 1.22312 1.02766 0.95583 0.98011 1.20922 0.95276 0.97874 0.93963 0.90834 1.21650 0.94558 1.04963 0.95638 1.20871 0.91898 0.75252 0.81608 1.90557 1.37307 1.51539 1.64915 1.46173 1.09290 1.70100 1.10655 1.20127 0.83248 0.94732 0.91744 1.22096 0.99853 0.97357 1.01386 1.22215 0.98394 0.95670 1.00586 1.20827 0.95646 0.95250 0.85383 1.44258 1.70319 1.17357 1.01047 1.19422 1.08450 1.18653 0.93128 0.92351 1.25672 0.95092 1.01226 1.01980 1.70140 1.09686 1.49786 1.27812 0.85419 0.77364 0.78332 0.79776 1.20617 1.21788 1.20535 1.20579 0.91835 0.83297 0.98864 1.22324 1.01674 0.99263 0.93874 0.93334 0.88315 0.92878 0.87380 0.92363 0.87573 0.92594 0.91646 0.89772 0.87219 0.88591 0.76108 0.92013 0.91658 0.91797 0.90754 0.92463 0.94298 0.97257 0.94047 0.92676 0.97333 0.91710 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.49 16 2 O -0.39 -7.30 9.74 -148.98 -1.45 -8.75 16 3 C 0.07 1.22 2.21 30.68 0.07 1.29 16 4 H 0.07 1.33 7.79 -2.39 -0.02 1.32 16 5 C 0.04 0.75 6.46 72.01 0.47 1.22 16 6 O -0.39 -8.46 10.77 -148.98 -1.60 -10.06 16 7 C 0.06 1.22 6.84 72.01 0.49 1.71 16 8 C -0.15 -3.40 5.13 30.69 0.16 -3.24 16 9 C -0.06 -1.34 1.64 -10.67 -0.02 -1.36 16 10 H 0.07 1.83 7.95 -2.39 -0.02 1.81 16 11 C -0.13 -2.87 5.12 29.85 0.15 -2.72 16 12 C 0.52 14.58 6.99 87.66 0.61 15.19 16 13 O -0.56 -18.30 10.23 -3.04 -0.03 -18.33 16 14 N -0.71 -20.76 4.10 -422.80 -1.73 -22.49 16 15 C 0.19 5.99 0.66 3.63 0.00 5.99 16 16 C -0.15 -4.18 8.40 71.98 0.60 -3.58 16 17 C -0.13 -4.68 4.66 30.66 0.14 -4.54 16 18 C 0.15 6.63 6.25 86.35 0.54 7.17 16 19 N -0.61 -29.86 2.99 -699.12 -2.09 -31.95 16 20 C -0.27 -14.61 9.59 84.04 0.81 -13.81 16 21 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 22 C -0.04 -2.40 4.91 84.86 0.42 -1.99 16 23 N -0.93 -53.01 11.19 21.65 0.24 -52.77 16 24 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 C 0.18 8.07 5.04 86.36 0.43 8.50 16 29 C -0.13 -4.58 4.96 30.67 0.15 -4.43 16 30 H 0.05 0.57 8.09 -2.39 -0.02 0.55 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.53 7.94 -2.39 -0.02 0.51 16 33 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 2.28 6.08 -2.38 -0.01 2.27 16 39 H 0.11 2.20 7.65 -2.39 -0.02 2.18 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.40 11.20 7.27 -92.71 -0.67 10.52 16 42 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.95 6.17 -2.39 -0.01 1.94 16 45 H 0.07 2.71 6.20 -2.39 -0.01 2.69 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.04 1.71 7.93 -2.39 -0.02 1.69 16 48 H 0.01 0.41 7.74 -2.39 -0.02 0.40 16 49 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 50 H 0.05 2.85 6.04 -2.39 -0.01 2.84 16 51 H 0.01 0.40 6.94 -2.39 -0.02 0.38 16 52 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 53 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -64.01 397.10 1.83 -62.18 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.21 Total: 28.84 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.26 Total: 6.91 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.59 Total: -107.21 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -3.09 Total: -37.14 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.01 1.83 -62.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754627002.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.392 kcal (2) G-P(sol) polarization free energy of solvation -64.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds