Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48502 * 109.46816 * 270.00212 * 3 2 1 5 5 H 1.48498 * 109.46985 * 29.99647 * 3 2 1 6 6 H 1.48490 * 109.47245 * 149.99946 * 3 2 1 7 7 C 1.38819 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99691 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00148 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00096 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47475 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47400 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46884 * 180.02562 * 12 11 10 14 14 C 1.42905 * 113.99512 * 180.02562 * 13 12 11 15 15 C 1.53034 * 109.44989 * 89.96134 * 14 13 12 16 16 C 1.53192 * 109.31077 * 181.37588 * 15 14 13 17 17 N 1.46931 * 108.77793 * 305.36414 * 16 15 14 18 18 C 1.34774 * 120.63313 * 233.58576 * 17 16 15 19 19 O 1.21283 * 119.99606 * 174.60312 * 18 17 16 20 20 C 1.50699 * 120.00038 * 354.61025 * 18 17 16 21 21 H 1.09002 * 109.52098 * 334.80946 * 20 18 17 22 22 C 1.53170 * 109.52257 * 95.00205 * 20 18 17 23 23 C 1.53181 * 109.03660 * 176.88636 * 22 20 18 24 24 C 1.53101 * 109.16041 * 303.01852 * 23 22 20 25 25 O 1.42908 * 109.41566 * 57.60897 * 24 23 22 26 26 C 1.42902 * 114.09405 * 298.84360 * 25 24 23 27 27 C 1.46927 * 118.73449 * 53.60841 * 17 16 15 28 28 C 1.53045 * 109.45513 * 210.02472 * 14 13 12 29 29 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99940 * 359.97438 * 9 7 2 31 31 H 1.09013 * 109.47016 * 59.99737 * 10 9 7 32 32 H 1.08996 * 109.47316 * 300.00302 * 10 9 7 33 33 H 1.08999 * 109.46811 * 60.00064 * 11 10 9 34 34 H 1.09000 * 109.47077 * 300.00617 * 11 10 9 35 35 H 1.08999 * 109.47148 * 60.00194 * 12 11 10 36 36 H 1.09003 * 109.46948 * 300.00191 * 12 11 10 37 37 H 1.09003 * 109.46054 * 329.99441 * 14 13 12 38 38 H 1.08998 * 109.50441 * 301.32746 * 15 14 13 39 39 H 1.09006 * 109.49928 * 61.43191 * 15 14 13 40 40 H 1.09008 * 109.58733 * 185.58225 * 16 15 14 41 41 H 1.08993 * 109.58996 * 65.15496 * 16 15 14 42 42 H 1.08999 * 109.54507 * 296.75257 * 22 20 18 43 43 H 1.08993 * 109.54694 * 57.02111 * 22 20 18 44 44 H 1.08992 * 109.52699 * 183.11287 * 23 22 20 45 45 H 1.08996 * 109.57213 * 62.95159 * 23 22 20 46 46 H 1.08997 * 109.47790 * 297.62164 * 24 23 22 47 47 H 1.09000 * 109.48581 * 177.59345 * 24 23 22 48 48 H 1.09003 * 109.48267 * 301.17186 * 26 25 24 49 49 H 1.08996 * 109.47689 * 181.14275 * 26 25 24 50 50 H 1.09005 * 109.58851 * 186.60439 * 27 17 16 51 51 H 1.09007 * 109.58340 * 66.17962 * 27 17 16 52 52 H 1.08997 * 109.49911 * 298.57647 * 28 14 13 53 53 H 1.08998 * 109.49699 * 58.64408 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1913 0.0000 12 6 6.3814 -3.5163 -0.0007 13 8 7.7863 -3.2552 0.0000 14 6 8.5963 -4.4325 -0.0012 15 6 8.8846 -4.8513 -1.4446 16 6 9.7241 -6.1327 -1.4422 17 7 10.9260 -5.9093 -0.6272 18 6 12.1524 -6.1503 -1.1316 19 8 13.1396 -5.8700 -0.4852 20 6 12.2968 -6.7678 -2.4986 21 1 11.4019 -7.3437 -2.7346 22 6 12.4859 -5.6626 -3.5421 23 6 12.7093 -6.3045 -4.9149 24 6 13.9150 -7.2450 -4.8396 25 8 13.6871 -8.2296 -3.8292 26 6 13.5184 -7.6903 -2.5167 27 6 10.7655 -5.4185 0.7484 28 6 9.9144 -4.1451 0.7215 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3621 0.0004 31 1 3.8491 -3.0423 -0.8903 32 1 3.8485 -3.0427 0.8897 33 1 5.8797 -1.6198 0.8900 34 1 5.8797 -1.6197 -0.8899 35 1 6.1181 -4.0875 -0.8909 36 1 6.1181 -4.0883 0.8891 37 1 8.0688 -5.2367 0.5118 38 1 7.9446 -5.0332 -1.9654 39 1 9.4340 -4.0575 -1.9509 40 1 10.0157 -6.3805 -2.4629 41 1 9.1416 -6.9504 -1.0178 42 1 11.5954 -5.0347 -3.5737 43 1 13.3521 -5.0560 -3.2780 44 1 12.8997 -5.5266 -5.6542 45 1 11.8231 -6.8706 -5.2018 46 1 14.8085 -6.6714 -4.5934 47 1 14.0528 -7.7372 -5.8023 48 1 14.4068 -7.1226 -2.2399 49 1 13.3705 -8.5034 -1.8060 50 1 11.7442 -5.1950 1.1732 51 1 10.2678 -6.1780 1.3515 52 1 10.4540 -3.3580 0.1949 53 1 9.7071 -3.8238 1.7422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755344302.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -151.084566 kcal Electronic energy + Delta-G solvation = -29822.120740 eV Core-core repulsion = 25692.606963 eV Total energy + Delta-G solvation = -4129.513777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77739 -40.15351 -39.33997 -37.78829 -36.94144 -34.95393 -34.30891 -33.19263 -32.49350 -31.88201 -31.56690 -27.27353 -26.26662 -26.07807 -25.00081 -24.27741 -23.73251 -22.59962 -22.16614 -21.34237 -19.95145 -19.61570 -18.65893 -17.69777 -17.51412 -16.94342 -16.89902 -16.69349 -16.60815 -16.27421 -15.81321 -15.71921 -15.53132 -15.40568 -15.14942 -15.00556 -14.77804 -14.36057 -14.12994 -14.04265 -13.76144 -13.70851 -13.62660 -13.31071 -12.97450 -12.95494 -12.67648 -12.50341 -12.47708 -12.30725 -12.20639 -12.07700 -11.99705 -11.98338 -11.82112 -11.76384 -11.50356 -11.38817 -10.99241 -10.87655 -10.51112 -10.39717 -9.80825 -9.32746 -8.04727 -5.38964 1.37910 1.40732 1.43162 1.48332 1.84309 2.47155 2.56463 2.84201 3.26664 3.39224 3.61571 3.63812 3.67890 3.71901 3.82831 3.92005 3.97940 4.04076 4.08077 4.11564 4.18290 4.25728 4.26304 4.32973 4.40337 4.41936 4.52055 4.58801 4.62105 4.69693 4.71395 4.71800 4.74668 4.75911 4.81144 4.81818 4.83133 4.93329 4.99549 5.05054 5.10052 5.20980 5.25631 5.29518 5.30582 5.44492 5.73288 6.13322 6.19076 6.26599 6.31858 7.01608 7.05557 7.81765 8.00265 9.16444 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021935 B = 0.001657 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.177857 B =16899.013725 C =17438.343313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.240 4.240 8 H 0.059 0.941 9 N -0.762 5.762 10 C 0.157 3.843 11 C -0.118 4.118 12 C 0.075 3.925 13 O -0.401 6.401 14 C 0.086 3.914 15 C -0.153 4.153 16 C 0.106 3.894 17 N -0.610 5.610 18 C 0.522 3.478 19 O -0.581 6.581 20 C -0.138 4.138 21 H 0.122 0.878 22 C -0.111 4.111 23 C -0.148 4.148 24 C 0.048 3.952 25 O -0.392 6.392 26 C 0.080 3.920 27 C 0.115 3.885 28 C -0.125 4.125 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.112 0.888 48 H 0.050 0.950 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.057 0.943 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.176 -18.507 -7.715 37.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.178 1.178 7 C -0.371 4.371 8 H 0.077 0.923 9 N -0.408 5.408 10 C 0.031 3.969 11 C -0.156 4.156 12 C -0.002 4.002 13 O -0.320 6.320 14 C 0.028 3.972 15 C -0.192 4.192 16 C -0.015 4.015 17 N -0.342 5.342 18 C 0.312 3.688 19 O -0.461 6.461 20 C -0.159 4.159 21 H 0.140 0.860 22 C -0.149 4.149 23 C -0.185 4.185 24 C -0.028 4.028 25 O -0.311 6.311 26 C 0.002 3.998 27 C -0.007 4.007 28 C -0.164 4.164 29 H 0.068 0.932 30 H 0.199 0.801 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.068 0.932 49 H 0.117 0.883 50 H 0.101 0.899 51 H 0.109 0.891 52 H 0.075 0.925 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 31.557 -18.490 -7.409 37.317 hybrid contribution -0.238 1.475 0.301 1.524 sum 31.319 -17.014 -7.107 36.344 Atomic orbital electron populations 1.69878 1.07090 1.26794 1.59452 1.25536 0.96179 1.01356 1.02446 0.85389 0.78588 0.79489 0.78214 1.20253 1.22047 1.17811 1.19069 0.82649 0.93667 1.41701 0.92290 1.42738 1.02630 1.04318 1.91096 1.20658 0.90013 0.87507 0.98745 1.21531 0.93175 0.98064 1.02799 1.22358 0.80069 0.96351 1.01406 1.87903 1.16895 1.32009 1.95233 1.22194 0.91331 0.87761 0.95914 1.22403 1.01421 0.98023 0.97333 1.22008 0.84911 0.97492 0.97132 1.48292 1.06344 1.64956 1.14606 1.20836 0.82416 0.77475 0.88102 1.90684 1.38629 1.54159 1.62642 1.22019 1.02868 0.99030 0.91975 0.86018 1.21545 1.03033 0.96237 0.94036 1.22169 0.99917 0.99963 0.96490 1.22852 0.96905 0.90943 0.92110 1.87951 1.92551 1.33926 1.16666 1.22322 0.95483 0.97124 0.84833 1.21602 1.00928 0.95429 0.82732 1.21914 0.94656 0.97857 1.01929 0.93239 0.80106 0.95020 0.95303 0.91763 0.91492 0.91717 0.92084 0.90330 0.88983 0.91807 0.87313 0.88726 0.90026 0.92352 0.88829 0.89791 0.93082 0.86972 0.93204 0.88345 0.89921 0.89092 0.92461 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.04 13.97 21.65 0.30 -62.73 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.96 45.67 27.74 68.60 1.90 47.58 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.25 -11.00 6.52 99.48 0.65 -10.36 16 7 C -0.24 -13.82 10.47 84.04 0.88 -12.94 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 9 N -0.76 -35.92 5.41 -343.44 -1.86 -37.78 16 10 C 0.16 5.74 6.26 86.38 0.54 6.28 16 11 C -0.12 -3.37 5.70 30.59 0.17 -3.20 16 12 C 0.07 1.62 5.75 71.98 0.41 2.04 16 13 O -0.40 -8.86 9.99 -148.98 -1.49 -10.34 16 14 C 0.09 1.30 2.57 30.62 0.08 1.38 16 15 C -0.15 -1.80 5.69 30.67 0.17 -1.63 16 16 C 0.11 0.86 6.15 86.36 0.53 1.39 16 17 N -0.61 -8.16 2.97 -818.88 -2.43 -10.59 16 18 C 0.52 8.87 6.70 87.66 0.59 9.46 16 19 O -0.58 -14.60 15.64 -3.04 -0.05 -14.64 16 20 C -0.14 -1.62 1.92 -11.45 -0.02 -1.64 16 21 H 0.12 0.93 6.19 -2.39 -0.01 0.92 16 22 C -0.11 -1.14 5.22 30.71 0.16 -0.98 16 23 C -0.15 -1.07 6.14 30.69 0.19 -0.88 16 24 C 0.05 0.46 6.84 72.02 0.49 0.95 16 25 O -0.39 -5.71 10.77 -148.98 -1.60 -7.31 16 26 C 0.08 1.13 5.83 72.01 0.42 1.55 16 27 C 0.12 1.60 6.44 86.36 0.56 2.16 16 28 C -0.13 -1.93 5.73 30.67 0.18 -1.76 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.37 16.51 5.53 -92.71 -0.51 16.00 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.21 7.84 -2.39 -0.02 1.19 16 36 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 37 H 0.08 0.97 7.79 -2.39 -0.02 0.95 16 38 H 0.09 0.94 7.84 -2.39 -0.02 0.92 16 39 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.11 0.52 5.42 -2.38 -0.01 0.51 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.08 0.73 8.00 -2.39 -0.02 0.71 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.05 0.86 7.77 -2.39 -0.02 0.84 16 49 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.45 7.00 -2.38 -0.02 1.43 16 51 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 52 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.68 410.08 0.90 -74.78 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.31 Total: 22.15 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.82 Total: -1.11 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -3.99 Total: -111.10 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -3.14 Total: -32.30 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Total: -75.68 0.90 -74.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755344302.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.301 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds