Wall clock time and date at job start Sat Apr 11 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 14 14 N 1.46506 * 109.46684 * 59.99944 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21588 * 120.00208 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00327 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00391 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.55125 * 35.00488 * 18 17 15 20 20 C 1.53175 * 109.55560 * 274.79649 * 18 17 15 21 21 C 1.53082 * 109.25451 * 182.69446 * 20 18 17 22 22 O 1.43016 * 109.39689 * 58.06836 * 21 20 18 23 23 C 1.42227 * 114.19290 * 299.96599 * 22 21 20 24 24 C 1.54316 * 110.16115 * 181.50943 * 23 22 21 25 25 C 1.55098 * 101.97382 * 98.26070 * 24 23 22 26 26 O 1.44428 * 103.56009 * 36.61369 * 25 24 23 27 27 C 1.43887 * 106.99564 * 320.24206 * 26 25 24 28 28 C 1.52519 * 111.01195 * 59.41844 * 23 22 21 29 29 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 30 30 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 31 31 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 34 34 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 39 39 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 40 40 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 41 41 H 0.96999 * 119.99625 * 359.97438 * 17 15 14 42 42 H 1.09005 * 109.51110 * 302.62569 * 20 18 17 43 43 H 1.09006 * 109.50993 * 62.75796 * 20 18 17 44 44 H 1.09002 * 109.48537 * 178.04573 * 21 20 18 45 45 H 1.09009 * 109.48246 * 298.09003 * 21 20 18 46 46 H 1.08997 * 110.92404 * 216.43388 * 24 23 22 47 47 H 1.09001 * 110.92760 * 340.09272 * 24 23 22 48 48 H 1.08998 * 110.60743 * 278.09465 * 25 24 23 49 49 H 1.09003 * 110.73208 * 155.19084 * 25 24 23 50 50 H 1.08997 * 109.90651 * 267.03944 * 27 26 25 51 51 H 1.08993 * 110.07202 * 145.85425 * 27 26 25 52 52 H 1.09002 * 109.60234 * 184.09507 * 28 23 22 53 53 H 1.09000 * 109.44057 * 63.92934 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8675 2.3806 7 6 1.8711 -0.4815 3.7320 8 7 1.4332 0.1388 4.8058 9 14 2.9451 -2.0004 3.9035 10 1 4.3728 -1.5945 3.9482 11 1 2.5943 -2.7158 5.1564 12 1 2.7219 -2.8981 2.7417 13 6 2.0400 -0.7213 -1.2492 14 7 1.5516 -0.0307 -2.4454 15 6 1.8777 -0.4909 -3.6695 16 8 2.5767 -1.4794 -3.7811 17 7 1.4288 0.1447 -4.7700 18 6 1.7828 -0.3559 -6.1005 19 1 1.8305 -1.4446 -6.0799 20 6 3.1446 0.2094 -6.5155 21 6 3.4767 -0.2634 -7.9330 22 8 2.4461 0.1611 -8.8290 23 6 1.1544 -0.3431 -8.5125 24 6 0.1247 0.1397 -9.5555 25 6 0.0244 -1.0864 -10.5001 26 8 0.1353 -2.2139 -9.6044 27 6 1.1318 -1.8752 -8.6232 28 6 0.7248 0.0920 -7.1153 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6675 -0.1926 5.6868 38 1 3.1300 -0.7217 -1.2490 39 1 1.6766 -1.7490 -1.2492 40 1 0.9943 0.7582 -2.3564 41 1 0.8709 0.9331 -4.6810 42 1 3.1084 1.2987 -6.4943 43 1 3.9108 -0.1434 -5.8251 44 1 4.4292 0.1649 -8.2454 45 1 3.5451 -1.3513 -7.9467 46 1 -0.8363 0.3491 -9.0857 47 1 0.4937 1.0145 -10.0909 48 1 0.8440 -1.0852 -11.2186 49 1 -0.9361 -1.0989 -11.0154 50 1 2.1078 -2.2385 -8.9449 51 1 0.8720 -2.3131 -7.6596 52 1 -0.2333 -0.3653 -6.8683 53 1 0.6292 1.1774 -7.0867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376869479.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:17 Heat of formation + Delta-G solvation = -158.220186 kcal Electronic energy + Delta-G solvation = -30749.011772 eV Core-core repulsion = 26619.188572 eV Total energy + Delta-G solvation = -4129.823201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95145 -40.97784 -39.05715 -38.52381 -36.31420 -35.20036 -34.06536 -33.47200 -32.38965 -30.60582 -29.70391 -28.25389 -27.97945 -27.29716 -25.07219 -24.47811 -24.07884 -22.60235 -21.73697 -20.63236 -20.07039 -19.02277 -18.87086 -18.06186 -17.83597 -16.97971 -16.78652 -16.58851 -16.25613 -16.22066 -15.84166 -15.54186 -15.42153 -15.33354 -15.03468 -14.91088 -14.59125 -14.42068 -14.20022 -14.14123 -13.87918 -13.69643 -13.05244 -12.94170 -12.84235 -12.79470 -12.61822 -12.47424 -12.38646 -12.29951 -12.15710 -12.15141 -11.96515 -11.77530 -11.53009 -11.48920 -11.30629 -11.13315 -10.91036 -10.82458 -10.70496 -10.52674 -10.34367 -9.75859 -8.22430 -6.22322 1.35590 1.38580 1.48509 1.67452 2.16333 2.38901 2.54935 2.99130 3.12936 3.26425 3.31601 3.66714 3.72066 3.74490 3.90576 3.93986 4.03444 4.07521 4.16037 4.17136 4.20880 4.32270 4.37258 4.54853 4.64070 4.66966 4.69986 4.73124 4.76645 4.78043 4.84596 4.86934 4.94019 4.96239 5.00557 5.03038 5.05921 5.10212 5.15496 5.30594 5.37546 5.41327 5.49518 5.52226 5.57985 5.70376 5.76614 5.77326 6.02101 6.17793 6.38183 6.84421 7.11634 7.40344 7.60042 8.92957 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.001935 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.489132 B =14470.218438 C =14546.837431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C -0.123 4.123 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.950 5.950 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.252 1.252 13 C 0.159 3.841 14 N -0.726 5.726 15 C 0.700 3.300 16 O -0.637 6.637 17 N -0.727 5.727 18 C 0.161 3.839 19 H 0.068 0.932 20 C -0.161 4.161 21 C 0.060 3.940 22 O -0.370 6.370 23 C 0.090 3.910 24 C -0.136 4.136 25 C 0.039 3.961 26 O -0.397 6.397 27 C 0.019 3.981 28 C -0.135 4.135 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.014 0.986 36 H 0.013 0.987 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.409 0.591 41 H 0.412 0.588 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.053 0.947 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.114 0.886 50 H 0.063 0.937 51 H 0.087 0.913 52 H 0.093 0.907 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 3.422 -33.219 33.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.057 4.057 3 C -0.180 4.180 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.176 1.176 13 C 0.034 3.966 14 N -0.382 5.382 15 C 0.399 3.601 16 O -0.518 6.518 17 N -0.383 5.383 18 C 0.055 3.945 19 H 0.086 0.914 20 C -0.201 4.201 21 C -0.016 4.016 22 O -0.289 6.289 23 C 0.050 3.950 24 C -0.173 4.173 25 C -0.037 4.037 26 O -0.316 6.316 27 C -0.058 4.058 28 C -0.173 4.173 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.247 0.753 41 H 0.249 0.751 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.071 0.929 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.132 0.868 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.111 0.889 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.775 2.442 -33.293 33.429 hybrid contribution 0.364 -0.168 1.463 1.517 sum -1.412 2.275 -31.829 31.942 Atomic orbital electron populations 1.21694 0.93883 1.01180 1.01256 1.20549 0.96507 0.96116 0.92569 1.21694 1.00206 0.94860 1.01242 1.19571 0.95762 0.95680 0.93187 1.21362 1.30255 1.12210 0.90033 0.92868 1.25836 0.97543 0.99846 0.95961 1.70037 1.48169 1.42579 0.98405 0.85905 0.79548 0.80794 0.77886 1.19733 1.21496 1.17618 1.21097 0.97901 0.95079 0.82494 1.45029 1.56209 1.33391 1.03555 1.16134 0.80096 0.82558 0.81266 1.90890 1.44709 1.29638 1.86603 1.44963 1.56454 1.33170 1.03692 1.20849 0.94362 0.98656 0.80588 0.91401 1.22557 0.97583 1.02447 0.97465 1.22697 0.91514 0.99445 0.87976 1.87898 1.15927 1.72714 1.52395 1.22387 0.85053 0.92260 0.95322 1.23143 0.98421 0.99675 0.96050 1.23822 1.03466 0.83795 0.92608 1.88913 1.59472 1.40683 1.42548 1.23906 0.92919 0.95618 0.93380 1.22336 0.98782 1.04059 0.92110 0.93607 0.91203 0.93812 0.93761 0.91232 0.93615 0.96771 0.96896 0.92884 0.93047 0.93154 0.75343 0.75131 0.89842 0.91915 0.86689 0.92858 0.87434 0.87720 0.91723 0.86824 0.91858 0.89495 0.88884 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -1.98 0.54 -52.18 -0.03 -2.00 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 5 C -0.50 -27.00 8.20 25.60 0.21 -26.79 16 6 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 7 C 0.00 0.25 5.47 84.65 0.46 0.71 16 8 N -0.95 -58.41 13.96 21.45 0.30 -58.12 16 9 Si 0.93 44.47 27.47 68.60 1.88 46.35 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 13 C 0.16 5.04 4.56 86.38 0.39 5.43 16 14 N -0.73 -17.82 4.96 -478.52 -2.37 -20.20 16 15 C 0.70 18.46 8.53 179.06 1.53 19.98 16 16 O -0.64 -22.77 16.01 -3.99 -0.06 -22.83 16 17 N -0.73 -12.52 5.09 -457.09 -2.33 -14.85 16 18 C 0.16 2.64 2.32 45.14 0.10 2.75 16 19 H 0.07 1.47 6.39 -2.39 -0.02 1.45 16 20 C -0.16 -2.57 5.70 30.68 0.17 -2.39 16 21 C 0.06 0.84 6.55 72.01 0.47 1.31 16 22 O -0.37 -5.41 10.18 -148.98 -1.52 -6.92 16 23 C 0.09 1.14 0.96 -10.30 -0.01 1.13 16 24 C -0.14 -1.21 6.43 31.76 0.20 -1.00 16 25 C 0.04 0.43 7.73 72.70 0.56 1.00 16 26 O -0.40 -7.19 11.53 -148.98 -1.72 -8.91 16 27 C 0.02 0.30 6.18 72.19 0.45 0.75 16 28 C -0.13 -1.48 4.06 30.53 0.12 -1.35 16 29 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 30 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 34 H 0.04 1.73 6.62 -2.39 -0.02 1.72 16 35 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 36 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 40 H 0.41 7.65 6.18 -92.71 -0.57 7.08 16 41 H 0.41 4.39 8.62 -92.71 -0.80 3.60 16 42 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 44 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 0.77 6.65 -2.38 -0.02 0.76 16 46 H 0.11 0.65 7.84 -2.39 -0.02 0.63 16 47 H 0.10 0.76 8.07 -2.39 -0.02 0.75 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.06 1.06 6.73 -2.39 -0.02 1.04 16 51 H 0.09 1.47 6.66 -2.39 -0.02 1.45 16 52 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -72.60 399.06 -0.43 -73.03 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.51 Total: 19.82 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.90 Total: -7.38 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -4.40 Total: -93.16 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -3.30 Total: -38.66 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -72.60 -0.43 -73.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376869479.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.188 kcal (2) G-P(sol) polarization free energy of solvation -72.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds