Wall clock time and date at job start Sat Apr 11 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46964 * 2 1 4 4 C 1.52995 * 109.47068 * 120.00007 * 2 1 3 5 5 C 1.50699 * 109.47534 * 299.99671 * 4 2 1 6 6 H 1.08004 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00116 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99886 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47001 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47287 * 300.00441 * 9 7 5 12 12 H 1.48499 * 109.46635 * 60.00490 * 9 7 5 13 13 C 1.53000 * 109.46510 * 240.00245 * 2 1 3 14 14 N 1.46497 * 109.47636 * 60.00187 * 13 2 1 15 15 C 1.34768 * 120.00200 * 179.97438 * 14 13 2 16 16 O 1.21587 * 120.00339 * 355.01853 * 15 14 13 17 17 N 1.34780 * 120.00223 * 175.01926 * 15 14 13 18 18 C 1.47158 * 120.97905 * 4.92594 * 17 15 14 19 19 C 1.53715 * 108.15822 * 129.43548 * 18 17 15 20 20 O 1.42964 * 109.14773 * 52.53793 * 19 18 17 21 21 C 1.42959 * 114.16438 * 297.28947 * 20 19 18 22 22 H 1.08997 * 109.51180 * 302.65124 * 21 20 19 23 23 C 1.53009 * 109.50840 * 182.50641 * 21 20 19 24 24 H 1.08993 * 110.27349 * 300.88898 * 23 21 20 25 25 C 1.54946 * 110.30777 * 63.08482 * 23 21 20 26 26 C 1.55308 * 100.93800 * 155.35947 * 25 23 21 27 27 C 1.54386 * 102.25346 * 325.86613 * 26 25 23 28 28 O 1.43233 * 107.58538 * 21.35917 * 27 26 25 29 29 C 1.47153 * 120.98361 * 185.21271 * 17 15 14 30 30 H 1.09006 * 109.46829 * 299.99731 * 1 2 3 31 31 H 1.08992 * 109.47366 * 59.99808 * 1 2 3 32 32 H 1.08999 * 109.47289 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47038 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47258 * 300.00316 * 3 2 1 35 35 H 1.08997 * 109.47251 * 60.00212 * 3 2 1 36 36 H 1.09000 * 109.46910 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47650 * 60.00401 * 4 2 1 38 38 H 0.97007 * 119.99452 * 179.97438 * 8 7 5 39 39 H 1.09000 * 109.46546 * 179.97438 * 13 2 1 40 40 H 1.08997 * 109.47297 * 299.99041 * 13 2 1 41 41 H 0.97003 * 119.99724 * 359.97438 * 14 13 2 42 42 H 1.09000 * 109.67919 * 249.21607 * 18 17 15 43 43 H 1.09001 * 109.67796 * 9.76627 * 18 17 15 44 44 H 1.09003 * 109.65630 * 292.57333 * 19 18 17 45 45 H 1.09000 * 109.44229 * 172.37474 * 19 18 17 46 46 H 1.08998 * 111.12723 * 273.27483 * 25 23 21 47 47 H 1.09005 * 111.12599 * 37.44669 * 25 23 21 48 48 H 1.09004 * 110.84708 * 207.67480 * 26 25 23 49 49 H 1.08999 * 110.84828 * 84.05492 * 26 25 23 50 50 H 1.09001 * 109.82931 * 261.83998 * 27 26 25 51 51 H 1.09003 * 109.90175 * 140.91195 * 27 26 25 52 52 H 1.08998 * 109.67983 * 350.23251 * 29 17 15 53 53 H 1.09008 * 109.67954 * 110.75193 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5378 -0.0109 2.4797 6 1 0.9166 0.8671 2.3806 7 6 1.8705 -0.4823 3.7319 8 7 2.6265 -1.5516 3.8525 9 14 1.2485 0.3988 5.2572 10 1 1.7434 -0.3014 6.4697 11 1 1.7445 1.7984 5.2573 12 1 -0.2365 0.3998 5.2571 13 6 2.0399 -0.7212 -1.2493 14 7 1.5516 -0.0306 -2.4455 15 6 1.8775 -0.4908 -3.6695 16 8 2.6494 -1.4233 -3.7828 17 7 1.3478 0.0828 -4.7682 18 6 0.4971 1.2789 -4.6628 19 6 1.0288 2.3331 -5.6471 20 8 1.1414 1.7471 -6.9462 21 6 2.0716 0.6642 -7.0211 22 1 3.0548 1.0058 -6.6975 23 6 2.1539 0.1601 -8.4635 24 1 1.1733 -0.1721 -8.8040 25 6 2.6991 1.2742 -9.3922 26 6 3.2951 0.4274 -10.5497 27 6 3.8097 -0.8251 -9.8081 28 8 3.1057 -0.9110 -8.5637 29 6 1.5981 -0.4722 -6.1079 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 -0.7208 1.2494 37 1 1.6768 -1.7489 1.2492 38 1 2.8609 -1.8830 4.7336 39 1 3.1299 -0.7208 -1.2496 40 1 1.6767 -1.7489 -1.2493 41 1 0.9937 0.7579 -2.3564 42 1 -0.5313 1.0214 -4.9163 43 1 0.5382 1.6702 -3.6463 44 1 2.0082 2.6807 -5.3183 45 1 0.3371 3.1747 -5.6860 46 1 1.8944 1.9166 -9.7495 47 1 3.4731 1.8576 -8.8934 48 1 4.1161 0.9560 -11.0342 49 1 2.5238 0.1608 -11.2723 50 1 4.8796 -0.7312 -9.6221 51 1 3.6152 -1.7160 -10.4053 52 1 2.3685 -1.2409 -6.0487 53 1 0.6787 -0.9035 -6.5041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377043021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:34 Heat of formation + Delta-G solvation = -144.664118 kcal Electronic energy + Delta-G solvation = -30897.026359 eV Core-core repulsion = 26767.790994 eV Total energy + Delta-G solvation = -4129.235366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77551 -40.63715 -39.47167 -38.61430 -35.93015 -35.25795 -33.99524 -33.29577 -32.94136 -29.95224 -29.27240 -28.55534 -27.96879 -27.11422 -25.29279 -24.76190 -23.51874 -22.49586 -22.02486 -20.96639 -20.12239 -19.02663 -18.35813 -18.24807 -17.53585 -17.15580 -16.87927 -16.67769 -16.47854 -16.17381 -15.96673 -15.56602 -15.51631 -15.34391 -14.94698 -14.60704 -14.53182 -14.38711 -14.27630 -13.93727 -13.90027 -13.73506 -13.06658 -12.84139 -12.75035 -12.69957 -12.59277 -12.55304 -12.33178 -12.27010 -12.22617 -12.20047 -12.00586 -11.75271 -11.69789 -11.54430 -11.37955 -11.19425 -10.97917 -10.86073 -10.54060 -10.49842 -10.24000 -9.50321 -8.12783 -6.20957 1.42506 1.45048 1.45806 1.53055 2.02580 2.20337 2.44987 2.84842 3.21400 3.21603 3.52868 3.56205 3.80110 3.83358 3.93295 4.00270 4.04329 4.07629 4.12979 4.17612 4.21354 4.29663 4.32879 4.48840 4.53612 4.67444 4.69601 4.71253 4.72989 4.79853 4.83939 4.85898 4.93284 4.95132 4.99119 5.04473 5.09681 5.11918 5.24583 5.31400 5.37309 5.46747 5.50226 5.52961 5.57694 5.79188 5.80363 5.90342 5.95162 6.08320 6.30892 6.87228 6.94272 7.45556 7.46885 8.99508 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.002013 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.270769 B =13904.859409 C =14455.343679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.075 0.925 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.293 1.293 11 H -0.266 1.266 12 H -0.266 1.266 13 C 0.160 3.840 14 N -0.721 5.721 15 C 0.700 3.300 16 O -0.637 6.637 17 N -0.633 5.633 18 C 0.068 3.932 19 C 0.051 3.949 20 O -0.372 6.372 21 C 0.092 3.908 22 H 0.055 0.945 23 C 0.088 3.912 24 H 0.088 0.912 25 C -0.138 4.138 26 C -0.149 4.149 27 C 0.041 3.959 28 O -0.402 6.402 29 C 0.107 3.893 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.059 0.941 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.259 0.741 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.408 0.592 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.055 0.945 45 H 0.145 0.855 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.070 0.930 51 H 0.079 0.921 52 H 0.077 0.923 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 12.012 -29.983 32.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.219 1.219 11 H -0.191 1.191 12 H -0.191 1.191 13 C 0.035 3.965 14 N -0.380 5.380 15 C 0.402 3.598 16 O -0.518 6.518 17 N -0.371 5.371 18 C -0.054 4.054 19 C -0.026 4.026 20 O -0.291 6.291 21 C 0.033 3.967 22 H 0.073 0.927 23 C 0.031 3.969 24 H 0.106 0.894 25 C -0.176 4.176 26 C -0.186 4.186 27 C -0.035 4.035 28 O -0.322 6.322 29 C -0.016 4.016 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.248 0.752 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.073 0.927 45 H 0.162 0.838 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.116 0.884 49 H 0.109 0.891 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.095 0.905 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.952 11.140 -29.919 32.308 hybrid contribution 0.220 -0.152 1.535 1.558 sum -4.732 10.989 -28.385 30.803 Atomic orbital electron populations 1.21686 0.93401 1.00997 1.01674 1.20713 0.96838 0.96359 0.92483 1.21686 0.99889 0.94516 1.01670 1.18961 0.94259 0.94211 0.92308 1.21555 1.30486 1.12136 0.90941 0.90716 1.25990 0.95709 0.95901 1.02840 1.70131 1.38741 1.24993 1.24124 0.85561 0.78959 0.78717 0.78161 1.21871 1.19072 1.19062 1.21095 0.97493 0.94947 0.82918 1.45142 1.56177 1.33334 1.03298 1.16063 0.80451 0.81968 0.81350 1.90889 1.41018 1.33682 1.86231 1.47354 1.53366 1.31450 1.04966 1.22767 0.95412 0.85008 1.02191 1.23272 1.02390 0.95265 0.81679 1.87858 1.62205 1.48054 1.30960 1.22268 0.92434 0.87071 0.94932 0.92712 1.22773 0.93955 0.87602 0.92614 0.89383 1.23192 1.01585 0.97337 0.95474 1.23149 1.02315 0.95101 0.98043 1.23359 0.96565 0.99410 0.84209 1.88417 1.54312 1.49444 1.40071 1.22062 1.02212 0.96854 0.80472 0.92255 0.91269 0.94513 0.94555 0.91300 0.92219 0.99672 0.99633 0.93218 0.94026 0.93951 0.75167 0.88619 0.87961 0.92680 0.83775 0.88025 0.90765 0.88353 0.89134 0.91155 0.90284 0.90454 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 3 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.40 7.65 25.60 0.20 -27.20 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 8 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.16 6.00 4.57 86.38 0.39 6.39 16 14 N -0.72 -21.34 4.87 -478.55 -2.33 -23.67 16 15 C 0.70 23.12 8.31 179.06 1.49 24.61 16 16 O -0.64 -27.55 15.82 -3.99 -0.06 -27.61 16 17 N -0.63 -15.47 3.01 -834.51 -2.52 -17.98 16 18 C 0.07 1.00 6.60 86.49 0.57 1.57 16 19 C 0.05 0.61 7.00 72.22 0.51 1.11 16 20 O -0.37 -5.90 10.14 -148.98 -1.51 -7.41 16 21 C 0.09 1.77 2.55 30.69 0.08 1.85 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 C 0.09 1.46 3.20 31.26 0.10 1.56 16 24 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 25 C -0.14 -1.59 6.34 32.05 0.20 -1.39 16 26 C -0.15 -1.31 7.02 31.86 0.22 -1.09 16 27 C 0.04 0.56 7.79 72.45 0.56 1.12 16 28 O -0.40 -8.39 10.65 -148.98 -1.59 -9.98 16 29 C 0.11 2.58 5.71 86.35 0.49 3.08 16 30 H 0.06 2.08 6.62 -2.38 -0.02 2.06 16 31 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 35 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 36 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 37 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.41 9.17 3.72 -92.71 -0.34 8.82 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 1.20 5.77 -2.39 -0.01 1.18 16 44 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.93 8.06 -2.38 -0.02 0.91 16 48 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.08 2.40 6.93 -2.39 -0.02 2.38 16 53 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -75.55 405.33 1.38 -74.17 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.54 Total: 19.57 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 6.53 Total: 4.57 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.56 Total: -98.80 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -3.16 Total: -45.00 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.55 1.38 -74.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377043021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.495 kcal (2) G-P(sol) polarization free energy of solvation -75.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds