Wall clock time and date at job start Sat Apr 11 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 C 1.52993 * 109.47374 * 120.00123 * 2 1 3 5 5 C 1.53003 * 109.47656 * 175.62171 * 4 2 1 6 6 H 1.09002 * 109.56714 * 51.68839 * 5 4 2 7 7 C 1.53242 * 109.52467 * 171.84508 * 5 4 2 8 8 C 1.53245 * 108.56376 * 175.52084 * 7 5 4 9 9 C 1.50591 * 109.07096 * 304.21217 * 8 7 5 10 10 O 1.21225 * 119.36230 * 209.28543 * 9 8 7 11 11 N 1.34139 * 121.27424 * 29.53785 * 9 8 7 12 12 C 1.46505 * 118.70045 * 179.19688 * 11 9 8 13 13 C 1.53002 * 109.47244 * 269.73249 * 12 11 9 14 14 H 1.08987 * 109.47019 * 305.00645 * 13 12 11 15 15 O 1.42899 * 109.46558 * 65.00577 * 13 12 11 16 16 C 1.53001 * 109.46780 * 185.00289 * 13 12 11 17 17 N 1.46902 * 109.46531 * 180.65377 * 16 13 12 18 18 C 1.46899 * 110.99828 * 160.12817 * 17 16 13 19 19 C 1.46892 * 111.00309 * 284.08081 * 17 16 13 20 20 C 1.50697 * 109.47514 * 170.00426 * 19 17 16 21 21 H 1.08004 * 119.99859 * 359.97438 * 20 19 17 22 22 C 1.37877 * 120.00288 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99946 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00253 * 179.72352 * 22 20 19 25 25 H 1.48504 * 109.47044 * 270.27690 * 24 22 20 26 26 H 1.48500 * 109.47117 * 30.26929 * 24 22 20 27 27 H 1.48495 * 109.47506 * 150.27645 * 24 22 20 28 28 C 1.34133 * 122.59248 * 358.92325 * 11 9 8 29 29 O 1.21228 * 119.36370 * 180.82073 * 28 11 9 30 30 H 1.09005 * 109.47144 * 299.99750 * 1 2 3 31 31 H 1.09003 * 109.47401 * 59.99859 * 1 2 3 32 32 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47372 * 240.00641 * 2 1 3 34 34 H 1.08997 * 109.46914 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47270 * 299.99973 * 3 2 1 36 36 H 1.09005 * 109.46936 * 60.00122 * 3 2 1 37 37 H 1.09003 * 109.46802 * 55.62303 * 4 2 1 38 38 H 1.08998 * 109.47303 * 295.62607 * 4 2 1 39 39 H 1.08997 * 109.62171 * 295.24494 * 7 5 4 40 40 H 1.08999 * 109.61694 * 55.79818 * 7 5 4 41 41 H 1.08995 * 109.52157 * 64.29704 * 8 7 5 42 42 H 1.09004 * 109.52125 * 184.41588 * 8 7 5 43 43 H 1.09007 * 109.46996 * 149.73635 * 12 11 9 44 44 H 1.08995 * 109.47321 * 29.74123 * 12 11 9 45 45 H 0.96697 * 114.00295 * 60.00041 * 15 13 12 46 46 H 1.08990 * 109.47438 * 60.65701 * 16 13 12 47 47 H 1.09007 * 109.47044 * 300.65003 * 16 13 12 48 48 H 1.09004 * 109.47349 * 189.01708 * 18 17 16 49 49 H 1.09003 * 109.47407 * 309.01513 * 18 17 16 50 50 H 1.09000 * 109.47643 * 69.01148 * 18 17 16 51 51 H 1.09004 * 109.47046 * 49.99876 * 19 17 16 52 52 H 1.09000 * 109.47411 * 290.00366 * 19 17 16 53 53 H 0.97005 * 119.99717 * 359.72092 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5660 -0.8173 1.1954 6 1 3.9876 0.1701 1.0072 7 6 4.0928 -1.3531 2.5309 8 6 5.6086 -1.5468 2.4151 9 6 5.9014 -2.4503 1.2465 10 8 6.8905 -3.1507 1.2699 11 7 5.0914 -2.4914 0.1780 12 6 5.4397 -3.3779 -0.9352 13 6 6.3098 -2.6186 -1.9388 14 1 5.7953 -1.7101 -2.2513 15 8 7.5541 -2.2747 -1.3260 16 6 6.5699 -3.5032 -3.1598 17 7 7.4183 -2.7799 -4.1165 18 6 8.0720 -3.7092 -5.0477 19 6 6.6448 -1.7641 -4.8429 20 6 7.5833 -0.8843 -5.6278 21 1 8.6480 -1.0617 -5.5904 22 6 7.0829 0.1479 -6.3928 23 7 5.7864 0.3643 -6.4379 24 14 8.2468 1.2434 -7.3595 25 1 8.6609 2.3927 -6.5152 26 1 9.4465 0.4630 -7.7559 27 1 7.5586 1.7453 -8.5759 28 6 3.9725 -1.7568 0.0909 29 8 3.2750 -1.8508 -0.8962 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 1.6140 -1.7238 1.2892 38 1 1.7421 -0.1642 2.1374 39 1 3.8747 -0.6378 3.3239 40 1 3.6179 -2.3082 2.7550 41 1 6.0886 -0.5802 2.2620 42 1 5.9887 -2.0012 3.3301 43 1 4.5286 -3.7174 -1.4280 44 1 5.9898 -4.2389 -0.5556 45 1 8.0669 -3.0363 -1.0226 46 1 5.6217 -3.7560 -3.6340 47 1 7.0742 -4.4171 -2.8456 48 1 8.8131 -3.1705 -5.6382 49 1 8.5633 -4.5026 -4.4843 50 1 7.3248 -4.1442 -5.7114 51 1 6.0858 -1.1559 -4.1317 52 1 5.9510 -2.2549 -5.5253 53 1 5.1820 -0.2048 -5.9362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414137463.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:52 Heat of formation + Delta-G solvation = -159.691597 kcal Electronic energy + Delta-G solvation = -31937.399665 eV Core-core repulsion = 27807.512659 eV Total energy + Delta-G solvation = -4129.887006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.88969 -40.15976 -39.48585 -37.87437 -37.20376 -36.43051 -35.01544 -34.88425 -31.64471 -30.75788 -29.05800 -28.08313 -28.01851 -26.32504 -25.72457 -24.45034 -23.78203 -22.93469 -22.13105 -21.01053 -19.48478 -19.03254 -18.52544 -18.32906 -17.80790 -16.95011 -16.74977 -16.49846 -16.36027 -15.89465 -15.69793 -15.61633 -15.45252 -15.33397 -15.19443 -14.87364 -14.72458 -14.46467 -13.87133 -13.73180 -13.56743 -13.33284 -13.24801 -13.16526 -13.03938 -13.01829 -12.87862 -12.75657 -12.59596 -12.52073 -12.49846 -12.13477 -12.02098 -11.92744 -11.84807 -11.59999 -11.45944 -11.34919 -11.08594 -10.85257 -10.65394 -10.62202 -10.48677 -9.16843 -8.74078 -6.44061 0.54399 1.44363 1.48781 1.58886 1.77196 1.81630 2.51869 2.96766 2.97310 3.10429 3.42876 3.50927 3.61581 3.63147 3.67896 3.86617 3.98279 4.08823 4.11789 4.15350 4.19354 4.30509 4.34380 4.37227 4.41285 4.45420 4.52915 4.55750 4.58510 4.75648 4.77794 4.79900 4.84691 4.86898 4.90646 4.91863 4.98579 5.01480 5.04826 5.05767 5.11807 5.17499 5.37590 5.48424 5.63714 5.71144 5.91131 5.96109 6.29730 6.33868 6.50889 6.54953 6.75125 6.80218 7.37017 8.64116 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003552 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.756681 B = 7880.135611 C = 9632.596427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C -0.147 4.147 4 C -0.085 4.085 5 C -0.110 4.110 6 H 0.123 0.877 7 C -0.107 4.107 8 C -0.136 4.136 9 C 0.518 3.482 10 O -0.529 6.529 11 N -0.564 5.564 12 C 0.070 3.930 13 C 0.118 3.882 14 H 0.053 0.947 15 O -0.551 6.551 16 C 0.027 3.973 17 N -0.535 5.535 18 C 0.043 3.957 19 C 0.200 3.800 20 C -0.598 4.598 21 H 0.055 0.945 22 C -0.039 4.039 23 N -0.936 5.936 24 Si 1.125 2.875 25 H -0.273 1.273 26 H -0.267 1.267 27 H -0.280 1.280 28 C 0.513 3.487 29 O -0.527 6.527 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.380 0.620 46 H 0.028 0.972 47 H 0.104 0.896 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.008 0.992 51 H -0.010 1.010 52 H -0.048 1.048 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -4.733 24.657 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C -0.204 4.204 4 C -0.123 4.123 5 C -0.131 4.131 6 H 0.141 0.859 7 C -0.144 4.144 8 C -0.175 4.175 9 C 0.311 3.689 10 O -0.403 6.403 11 N -0.305 5.305 12 C -0.053 4.053 13 C 0.057 3.943 14 H 0.071 0.929 15 O -0.357 6.357 16 C -0.102 4.102 17 N -0.259 5.259 18 C -0.105 4.105 19 C 0.073 3.927 20 C -0.636 4.636 21 H 0.073 0.927 22 C -0.236 4.236 23 N -0.574 5.574 24 Si 0.945 3.055 25 H -0.199 1.199 26 H -0.191 1.191 27 H -0.205 1.205 28 C 0.305 3.695 29 O -0.402 6.402 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.103 0.897 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.229 0.771 46 H 0.046 0.954 47 H 0.122 0.878 48 H 0.075 0.925 49 H 0.106 0.894 50 H 0.027 0.973 51 H 0.008 0.992 52 H -0.030 1.030 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.541 -3.030 23.295 24.384 hybrid contribution -0.828 -2.401 -0.295 2.557 sum -7.368 -5.431 22.999 24.754 Atomic orbital electron populations 1.21754 0.94579 1.01433 1.01923 1.21467 0.96456 0.96523 0.99792 1.21879 1.00406 0.96026 1.02058 1.21493 0.90248 1.01532 0.99019 1.21809 0.99840 0.98604 0.92844 0.85927 1.21859 0.92227 1.04469 0.95864 1.22085 0.99508 1.00550 0.95401 1.21871 0.81046 0.82444 0.83556 1.90667 1.26618 1.42254 1.80769 1.46705 1.24049 1.40744 1.19038 1.22316 1.01273 0.93926 0.87808 1.21837 0.84877 0.96945 0.90616 0.92897 1.86588 1.32352 1.37306 1.79473 1.22750 0.96327 0.97203 0.93893 1.61834 1.31718 1.14178 1.18160 1.22230 0.98053 0.95001 0.95170 1.19502 0.92161 0.90397 0.90615 1.22301 0.94767 1.16699 1.29875 0.92705 1.27525 0.99300 0.98936 0.97823 1.70907 1.03511 1.40575 1.42387 0.82849 0.72998 0.74448 0.75164 1.19898 1.19146 1.20506 1.21963 0.78515 0.79713 0.89289 1.90676 1.51686 1.64200 1.33594 0.90920 0.93907 0.93168 0.91815 0.93595 0.94313 0.90326 0.91785 0.87128 0.84734 0.89650 0.85905 0.84604 0.88608 0.86849 0.77140 0.95377 0.87795 0.92540 0.89412 0.97321 0.99219 1.03038 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.19 71.98 0.66 -1.85 16 2 C -0.12 -2.58 2.76 -10.80 -0.03 -2.61 16 3 C -0.15 -2.87 8.95 71.98 0.64 -2.23 16 4 C -0.09 -1.20 3.98 30.59 0.12 -1.08 16 5 C -0.11 -1.69 2.32 -11.49 -0.03 -1.72 16 6 H 0.12 1.83 6.20 -2.39 -0.01 1.82 16 7 C -0.11 -0.79 5.36 30.76 0.16 -0.62 16 8 C -0.14 -1.53 6.08 29.90 0.18 -1.35 16 9 C 0.52 11.66 7.08 87.72 0.62 12.28 16 10 O -0.53 -14.71 15.28 6.81 0.10 -14.60 16 11 N -0.56 -14.65 2.51 -757.75 -1.91 -16.55 16 12 C 0.07 2.01 4.71 86.38 0.41 2.42 16 13 C 0.12 4.36 3.26 30.60 0.10 4.46 16 14 H 0.05 2.47 6.82 -2.39 -0.02 2.46 16 15 O -0.55 -20.70 12.01 -139.31 -1.67 -22.37 16 16 C 0.03 1.02 4.67 86.30 0.40 1.43 16 17 N -0.54 -24.88 4.54 -927.06 -4.21 -29.09 16 18 C 0.04 1.76 9.31 127.69 1.19 2.95 16 19 C 0.20 11.49 3.86 85.56 0.33 11.82 16 20 C -0.60 -36.56 8.58 25.60 0.22 -36.34 16 21 H 0.05 3.32 7.10 -2.91 -0.02 3.29 16 22 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 23 N -0.94 -61.16 13.65 21.45 0.29 -60.87 16 24 Si 1.13 52.98 29.90 68.60 2.05 55.03 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 28 C 0.51 13.23 7.15 87.72 0.63 13.86 16 29 O -0.53 -17.86 13.04 -2.87 -0.04 -17.89 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.91 5.30 -2.39 -0.01 1.90 16 34 H 0.05 0.95 6.38 -2.39 -0.02 0.93 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 38 H 0.11 0.82 8.13 -2.39 -0.02 0.80 16 39 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 2.83 7.28 -2.38 -0.02 2.81 16 44 H 0.11 2.85 7.27 -2.39 -0.02 2.83 16 45 H 0.38 11.84 8.64 -74.06 -0.64 11.20 16 46 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 47 H 0.10 3.06 7.75 -2.38 -0.02 3.04 16 48 H 0.06 2.46 7.01 -2.38 -0.02 2.45 16 49 H 0.09 2.78 7.85 -2.39 -0.02 2.77 16 50 H 0.01 0.34 8.08 -2.39 -0.02 0.32 16 51 H -0.01 -0.64 6.52 -2.38 -0.02 -0.65 16 52 H -0.05 -2.93 7.94 -2.39 -0.02 -2.95 16 53 H 0.25 16.76 7.22 -92.70 -0.67 16.09 16 Total: -1.00 -84.01 409.84 1.06 -82.95 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.36 Total: 23.92 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.08 Total: -0.52 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -5.82 Total: -106.51 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -1.61 Total: -54.87 kcal Atomic # 14 Polarization: 52.98 SS G_CDS: 2.05 Total: 55.03 kcal Total: -84.01 1.06 -82.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414137463.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.740 kcal (2) G-P(sol) polarization free energy of solvation -84.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds