Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46988 * 2 1 4 4 C 1.52995 * 109.47213 * 119.99877 * 2 1 3 5 5 C 1.53002 * 109.47354 * 174.87770 * 4 2 1 6 6 H 1.09003 * 109.51821 * 51.89305 * 5 4 2 7 7 C 1.53236 * 109.52309 * 172.01622 * 5 4 2 8 8 C 1.53245 * 108.56682 * 175.52298 * 7 5 4 9 9 C 1.50583 * 109.16106 * 304.38819 * 8 7 5 10 10 O 1.21233 * 119.36082 * 209.09347 * 9 8 7 11 11 N 1.34139 * 121.28138 * 29.07196 * 9 8 7 12 12 C 1.46504 * 118.70764 * 179.48054 * 11 9 8 13 13 C 1.52993 * 109.47602 * 89.99662 * 12 11 9 14 14 H 1.09007 * 109.47072 * 60.00140 * 13 12 11 15 15 O 1.42900 * 109.47210 * 300.00540 * 13 12 11 16 16 C 1.52996 * 109.47578 * 179.97438 * 13 12 11 17 17 N 1.46896 * 109.47554 * 185.00223 * 16 13 12 18 18 C 1.46894 * 111.00056 * 66.04160 * 17 16 13 19 19 C 1.46900 * 111.00256 * 190.00152 * 17 16 13 20 20 C 1.50701 * 109.47313 * 169.99850 * 19 17 16 21 21 H 1.07996 * 119.99651 * 359.97438 * 20 19 17 22 22 C 1.37872 * 120.00058 * 180.02562 * 20 19 17 23 23 N 1.31511 * 120.00457 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00047 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46924 * 90.00338 * 24 22 20 26 26 H 1.48503 * 109.47350 * 210.00564 * 24 22 20 27 27 H 1.48503 * 109.47206 * 330.01020 * 24 22 20 28 28 C 1.34136 * 122.58888 * 359.75256 * 11 9 8 29 29 O 1.21227 * 119.36402 * 180.27127 * 28 11 9 30 30 H 1.08999 * 109.47410 * 58.60527 * 1 2 3 31 31 H 1.08998 * 109.47179 * 178.59983 * 1 2 3 32 32 H 1.08998 * 109.47292 * 298.60092 * 1 2 3 33 33 H 1.09007 * 109.47108 * 240.00011 * 2 1 3 34 34 H 1.08997 * 109.46945 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47169 * 299.99833 * 3 2 1 36 36 H 1.08999 * 109.46868 * 60.00054 * 3 2 1 37 37 H 1.09005 * 109.46937 * 54.88536 * 4 2 1 38 38 H 1.08998 * 109.47431 * 294.88615 * 4 2 1 39 39 H 1.08998 * 109.62305 * 55.80189 * 7 5 4 40 40 H 1.09002 * 109.62590 * 295.24849 * 7 5 4 41 41 H 1.09001 * 109.52517 * 184.47887 * 8 7 5 42 42 H 1.08996 * 109.52413 * 64.29442 * 8 7 5 43 43 H 1.09007 * 109.46792 * 329.99631 * 12 11 9 44 44 H 1.08996 * 109.47053 * 210.00111 * 12 11 9 45 45 H 0.96708 * 113.99511 * 299.99347 * 15 13 12 46 46 H 1.09000 * 109.47049 * 305.00576 * 16 13 12 47 47 H 1.09004 * 109.46782 * 65.00088 * 16 13 12 48 48 H 1.09002 * 109.46629 * 60.00776 * 18 17 16 49 49 H 1.09000 * 109.47474 * 179.97438 * 18 17 16 50 50 H 1.08994 * 109.47899 * 300.00484 * 18 17 16 51 51 H 1.08996 * 109.47014 * 290.00073 * 19 17 16 52 52 H 1.09000 * 109.47130 * 49.99836 * 19 17 16 53 53 H 0.96996 * 120.00506 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5646 -0.8337 1.1865 6 1 3.9947 0.1494 0.9950 7 6 4.0935 -1.3733 2.5196 8 6 5.6064 -1.5833 2.3953 9 6 5.8852 -2.4878 1.2241 10 8 6.8694 -3.1955 1.2407 11 7 5.0655 -2.5260 0.1629 12 6 5.3971 -3.4184 -0.9506 13 6 4.7558 -4.7874 -0.7156 14 1 3.6735 -4.6751 -0.6498 15 8 5.2519 -5.3428 0.5040 16 6 5.1015 -5.7191 -1.8788 17 7 4.3893 -6.9933 -1.7140 18 6 2.9377 -6.8048 -1.8367 19 6 4.8732 -7.9949 -2.6735 20 6 4.3051 -9.3451 -2.3197 21 1 3.6505 -9.4489 -1.4671 22 6 4.6220 -10.4481 -3.0839 23 7 4.1259 -11.6263 -2.7756 24 14 5.7549 -10.2686 -4.5583 25 1 7.1620 -10.4714 -4.1289 26 1 5.3989 -11.2831 -5.5826 27 1 5.6047 -8.9086 -5.1354 28 6 3.9571 -1.7753 0.0789 29 8 3.2551 -1.8600 -0.9059 30 1 -0.3634 0.5353 -0.8772 31 1 -0.3633 -1.0273 -0.0251 32 1 -0.3634 0.4919 0.9022 33 1 1.8933 -0.5139 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6037 -1.7190 1.2962 38 1 1.7534 -0.1572 2.1368 39 1 3.6097 -2.3230 2.7479 40 1 3.8877 -0.6546 3.3130 41 1 5.9868 -2.0415 3.3082 42 1 6.0958 -0.6222 2.2379 43 1 6.4794 -3.5307 -1.0164 44 1 5.0187 -2.9947 -1.8808 45 1 6.2104 -5.4708 0.5166 46 1 4.8019 -5.2543 -2.8181 47 1 6.1760 -5.9023 -1.8905 48 1 2.7061 -6.3999 -2.8219 49 1 2.4348 -7.7636 -1.7111 50 1 2.5951 -6.1111 -1.0690 51 1 4.5547 -7.7187 -3.6786 52 1 5.9618 -8.0376 -2.6362 53 1 4.3485 -12.4022 -3.3134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414137467.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -151.321800 kcal Electronic energy + Delta-G solvation = -31542.837339 eV Core-core repulsion = 27413.313275 eV Total energy + Delta-G solvation = -4129.524064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.83963 -40.11300 -39.43194 -37.80428 -37.10540 -36.38081 -34.95430 -34.64479 -31.72581 -30.73295 -29.78954 -28.06702 -27.95640 -26.30470 -25.98545 -24.13130 -23.51836 -22.71633 -21.89223 -20.95415 -19.39013 -19.06820 -18.41440 -18.23725 -17.57854 -17.13026 -16.95028 -16.58649 -16.14650 -16.08505 -15.74154 -15.54925 -15.37580 -15.11762 -15.04755 -14.78317 -14.65236 -14.59465 -14.09719 -13.68024 -13.58240 -13.50471 -13.23068 -13.10540 -12.96733 -12.92331 -12.72597 -12.65452 -12.52229 -12.44412 -12.43853 -12.08622 -12.01244 -11.94615 -11.76871 -11.61892 -11.43849 -11.39333 -11.29852 -11.01752 -10.81219 -10.57520 -10.43232 -9.05958 -8.30819 -6.34860 0.59264 1.32148 1.34013 1.44581 1.49230 1.86605 2.31860 3.00050 3.02132 3.04635 3.48583 3.54492 3.65740 3.70552 3.72501 3.92403 4.02584 4.12813 4.17914 4.22267 4.24073 4.32958 4.37292 4.43819 4.46669 4.54611 4.57376 4.60454 4.64372 4.80718 4.81899 4.86225 4.89871 4.93345 4.95112 4.96449 5.04184 5.05677 5.11744 5.13372 5.18514 5.22591 5.40659 5.48176 5.55083 5.69504 5.92744 6.01426 6.25717 6.55999 6.58959 6.70743 6.75738 6.82994 7.28460 8.86070 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.002639 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.661220 B =10608.916316 C =11594.263602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.104 4.104 6 H 0.142 0.858 7 C -0.114 4.114 8 C -0.133 4.133 9 C 0.518 3.482 10 O -0.533 6.533 11 N -0.562 5.562 12 C 0.066 3.934 13 C 0.115 3.885 14 H 0.084 0.916 15 O -0.556 6.556 16 C 0.026 3.974 17 N -0.540 5.540 18 C 0.044 3.956 19 C 0.172 3.828 20 C -0.518 4.518 21 H 0.034 0.966 22 C 0.007 3.993 23 N -0.948 5.948 24 Si 0.951 3.049 25 H -0.263 1.263 26 H -0.280 1.280 27 H -0.252 1.252 28 C 0.517 3.483 29 O -0.522 6.522 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.379 0.621 46 H 0.045 0.955 47 H 0.082 0.918 48 H 0.021 0.979 49 H 0.049 0.951 50 H 0.066 0.934 51 H -0.011 1.011 52 H 0.030 0.970 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 33.979 10.760 35.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.200 4.200 4 C -0.130 4.130 5 C -0.124 4.124 6 H 0.159 0.841 7 C -0.151 4.151 8 C -0.172 4.172 9 C 0.310 3.690 10 O -0.407 6.407 11 N -0.303 5.303 12 C -0.057 4.057 13 C 0.054 3.946 14 H 0.102 0.898 15 O -0.363 6.363 16 C -0.103 4.103 17 N -0.263 5.263 18 C -0.104 4.104 19 C 0.045 3.955 20 C -0.557 4.557 21 H 0.053 0.947 22 C -0.190 4.190 23 N -0.589 5.589 24 Si 0.773 3.227 25 H -0.188 1.188 26 H -0.205 1.205 27 H -0.175 1.175 28 C 0.309 3.691 29 O -0.396 6.396 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.158 0.842 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.228 0.772 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.039 0.961 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.006 0.994 52 H 0.048 0.952 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.048 33.239 10.855 34.966 hybrid contribution 0.571 -0.854 -2.037 2.281 sum 0.619 32.385 8.818 33.570 Atomic orbital electron populations 1.21789 0.95446 1.00948 1.01961 1.21464 0.95787 0.97111 0.99498 1.21852 1.00996 0.95065 1.02080 1.21522 0.90961 1.00995 0.99538 1.21745 0.99303 0.99196 0.92163 0.84060 1.21854 0.92730 1.03708 0.96812 1.22055 0.99175 1.00921 0.95091 1.21880 0.80942 0.82473 0.83678 1.90694 1.28375 1.41824 1.79856 1.46668 1.24743 1.39047 1.19825 1.22338 1.02679 0.90149 0.90570 1.22005 0.98371 0.89732 0.84499 0.89846 1.86533 1.28105 1.85425 1.36188 1.22786 0.99784 0.90377 0.97373 1.61723 1.04482 1.07577 1.52550 1.22160 0.88690 1.00853 0.98729 1.19963 0.95507 0.90530 0.89479 1.21241 1.29212 0.92364 1.12847 0.94720 1.25881 0.97755 0.94512 1.00901 1.70051 1.46792 1.00341 1.41692 0.85671 0.79335 0.78916 0.78729 1.18810 1.20543 1.17547 1.21852 0.78367 0.79681 0.89217 1.90649 1.49788 1.65509 1.33691 0.93130 0.94171 0.91570 0.90727 0.92295 0.93500 0.91267 0.93303 0.87721 0.91611 0.84803 0.85855 0.84238 0.87946 0.87823 0.77202 0.93725 0.89954 0.96087 0.93213 0.91536 0.99363 0.95174 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 2 C -0.12 -1.69 2.76 -10.80 -0.03 -1.72 16 3 C -0.14 -1.38 8.96 71.98 0.65 -0.73 16 4 C -0.09 -1.01 3.98 30.59 0.12 -0.89 16 5 C -0.10 -1.00 2.32 -11.50 -0.03 -1.03 16 6 H 0.14 0.67 6.23 -2.39 -0.01 0.66 16 7 C -0.11 -0.68 5.37 30.76 0.17 -0.52 16 8 C -0.13 -1.06 6.07 29.89 0.18 -0.88 16 9 C 0.52 9.85 6.98 87.72 0.61 10.46 16 10 O -0.53 -13.78 15.02 9.05 0.14 -13.64 16 11 N -0.56 -11.67 2.49 -757.77 -1.89 -13.56 16 12 C 0.07 1.58 4.73 86.38 0.41 1.99 16 13 C 0.11 3.48 3.19 30.59 0.10 3.58 16 14 H 0.08 2.81 6.33 -2.38 -0.02 2.80 16 15 O -0.56 -18.69 12.03 -137.04 -1.65 -20.34 16 16 C 0.03 0.88 4.60 86.30 0.40 1.28 16 17 N -0.54 -23.90 4.70 -927.09 -4.36 -28.26 16 18 C 0.04 1.85 9.14 127.69 1.17 3.02 16 19 C 0.17 8.64 3.79 85.56 0.32 8.97 16 20 C -0.52 -31.35 9.01 25.60 0.23 -31.12 16 21 H 0.03 2.35 7.37 -2.91 -0.02 2.33 16 22 C 0.01 0.40 5.47 84.65 0.46 0.87 16 23 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 24 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 25 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 28 C 0.52 9.90 7.15 87.72 0.63 10.53 16 29 O -0.52 -13.32 13.03 -2.86 -0.04 -13.35 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.56 5.26 -2.38 -0.01 1.54 16 34 H 0.06 0.47 6.41 -2.39 -0.02 0.45 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 0.75 8.13 -2.38 -0.02 0.73 16 38 H 0.10 0.56 8.13 -2.39 -0.02 0.54 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.10 2.36 7.29 -2.38 -0.02 2.34 16 44 H 0.10 2.44 7.29 -2.39 -0.02 2.42 16 45 H 0.38 11.69 8.30 -74.05 -0.61 11.08 16 46 H 0.04 1.43 8.12 -2.39 -0.02 1.41 16 47 H 0.08 2.65 7.93 -2.39 -0.02 2.63 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.05 2.38 6.76 -2.39 -0.02 2.36 16 50 H 0.07 2.52 6.37 -2.39 -0.02 2.50 16 51 H -0.01 -0.56 7.18 -2.39 -0.02 -0.58 16 52 H 0.03 1.47 7.36 -2.39 -0.02 1.45 16 53 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -79.81 406.36 0.66 -79.14 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.23 Total: 21.17 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.05 Total: 2.44 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -5.95 Total: -102.47 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -1.55 Total: -47.34 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -79.81 0.66 -79.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414137467.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.178 kcal (2) G-P(sol) polarization free energy of solvation -79.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds