Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47197 * 2 1 4 4 C 1.53004 * 109.46989 * 120.00176 * 2 1 3 5 5 C 1.53002 * 109.46894 * 173.71346 * 4 2 1 6 6 C 1.53001 * 110.54215 * 323.09757 * 5 4 2 7 7 C 1.54223 * 110.60462 * 200.24725 * 5 4 2 8 8 C 1.51315 * 103.55621 * 241.48338 * 7 5 4 9 9 O 1.21233 * 125.39504 * 179.97438 * 8 7 5 10 10 N 1.33877 * 109.20672 * 0.02562 * 8 7 5 11 11 C 1.46497 * 122.76267 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47197 * 269.97602 * 11 10 8 13 13 H 1.09003 * 109.47169 * 59.99922 * 12 11 10 14 14 O 1.42903 * 109.46913 * 300.00211 * 12 11 10 15 15 C 1.52994 * 109.47116 * 179.97438 * 12 11 10 16 16 N 1.46904 * 109.47187 * 180.52872 * 15 12 11 17 17 C 1.46899 * 111.00135 * 199.88591 * 16 15 12 18 18 C 1.46898 * 111.00127 * 75.93143 * 16 15 12 19 19 C 1.50697 * 109.46826 * 190.00467 * 18 16 15 20 20 H 1.08001 * 120.00530 * 359.97438 * 19 18 16 21 21 C 1.37887 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31510 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00230 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47221 * 89.99835 * 23 21 19 25 25 H 1.48497 * 109.47287 * 210.00148 * 23 21 19 26 26 H 1.48506 * 109.47055 * 330.00116 * 23 21 19 27 27 C 1.33873 * 114.47456 * 359.97438 * 10 8 7 28 28 O 1.21226 * 125.39644 * 179.97438 * 27 10 8 29 29 H 1.09005 * 109.47372 * 299.99848 * 1 2 3 30 30 H 1.09008 * 109.47277 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47372 * 240.00152 * 2 1 3 33 33 H 1.08993 * 109.47223 * 196.79106 * 3 2 1 34 34 H 1.08997 * 109.46979 * 316.79525 * 3 2 1 35 35 H 1.08997 * 109.46900 * 76.79425 * 3 2 1 36 36 H 1.08994 * 109.47301 * 53.71614 * 4 2 1 37 37 H 1.09001 * 109.47079 * 293.71059 * 4 2 1 38 38 H 1.09000 * 109.46632 * 297.85080 * 6 5 4 39 39 H 1.08991 * 109.47333 * 57.84947 * 6 5 4 40 40 H 1.09007 * 109.47040 * 177.85663 * 6 5 4 41 41 H 1.09006 * 110.60905 * 359.97438 * 7 5 4 42 42 H 1.08999 * 110.60682 * 122.96509 * 7 5 4 43 43 H 1.09007 * 109.46838 * 29.97529 * 11 10 8 44 44 H 1.09003 * 109.47124 * 149.97497 * 11 10 8 45 45 H 0.96701 * 114.00001 * 299.99733 * 14 12 11 46 46 H 1.09000 * 109.47278 * 300.52295 * 15 12 11 47 47 H 1.08996 * 109.47464 * 60.52912 * 15 12 11 48 48 H 1.09006 * 109.47331 * 64.77715 * 17 16 15 49 49 H 1.08998 * 109.47215 * 184.77116 * 17 16 15 50 50 H 1.08998 * 109.47394 * 304.77814 * 17 16 15 51 51 H 1.09001 * 109.46796 * 309.99687 * 18 16 15 52 52 H 1.08992 * 109.47316 * 69.99943 * 18 16 15 53 53 H 0.96997 * 120.00373 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5618 -0.8595 1.1728 6 6 4.0048 -1.1280 -0.2669 7 6 4.0526 -1.9817 2.1099 8 6 4.9538 -1.2588 3.0872 9 8 5.5532 -1.7768 4.0048 10 7 4.9832 0.0436 2.7786 11 6 5.7686 1.0204 3.5369 12 6 4.9143 1.5925 4.6700 13 1 4.6012 0.7852 5.3321 14 8 3.7607 2.2322 4.1203 15 6 5.7347 2.6122 5.4623 16 7 4.9186 3.1522 6.5579 17 6 5.4611 4.4300 7.0382 18 6 4.8038 2.1831 7.6559 19 6 3.7711 2.6627 8.6432 20 1 3.2523 3.5943 8.4723 21 6 3.4886 1.9119 9.7647 22 7 4.1207 0.7776 9.9730 23 14 2.2091 2.5066 10.9889 24 1 0.8745 1.9806 10.6049 25 1 2.5605 2.0208 12.3474 26 1 2.1751 3.9912 10.9874 27 6 4.2368 0.3795 1.7192 28 8 4.1197 1.4992 1.2695 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.0886 1.4571 -0.2969 34 1 1.4548 2.0347 -0.7035 35 1 1.9397 1.8633 1.0005 36 1 1.5877 -1.7113 1.3073 37 1 1.7714 -0.1466 2.1357 38 1 3.5781 -2.0711 -0.6084 39 1 3.6593 -0.3189 -0.9102 40 1 5.0926 -1.1855 -0.3076 41 1 3.2126 -2.4412 2.6311 42 1 4.6147 -2.7298 1.5510 43 1 6.6485 0.5324 3.9561 44 1 6.0817 1.8277 2.8747 45 1 3.9644 2.9624 3.5200 46 1 6.6192 2.1260 5.8738 47 1 6.0402 3.4243 4.8026 48 1 5.3917 5.1752 6.2456 49 1 4.8891 4.7655 7.9033 50 1 6.5052 4.2978 7.3220 51 1 4.5020 1.2151 7.2560 52 1 5.7670 2.0852 8.1564 53 1 3.9218 0.2493 10.7618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414153089.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -138.989794 kcal Electronic energy + Delta-G solvation = -32048.413814 eV Core-core repulsion = 27919.424505 eV Total energy + Delta-G solvation = -4128.989308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.23413 -39.93840 -39.47807 -38.03078 -37.22198 -36.70430 -34.65840 -34.52093 -31.75921 -29.66262 -29.20693 -28.12431 -27.66689 -27.60292 -25.81109 -25.05193 -23.64581 -22.35411 -21.86489 -21.03991 -19.75025 -18.72181 -18.32351 -17.87428 -17.48290 -17.07136 -16.76888 -16.43333 -16.26190 -16.23794 -15.98750 -15.45646 -15.32552 -15.11679 -15.04658 -14.84105 -14.72689 -14.29213 -14.00132 -13.60195 -13.38019 -13.27021 -13.23767 -13.15871 -13.03458 -12.93306 -12.78712 -12.68941 -12.58494 -12.52108 -12.41053 -12.29568 -12.11730 -11.83352 -11.75612 -11.49604 -11.47068 -11.34870 -11.21227 -11.05933 -10.65592 -10.56619 -10.47268 -9.02499 -8.24126 -6.34656 0.52577 1.36770 1.39467 1.45300 1.50378 1.76925 2.37032 3.02366 3.06682 3.11630 3.20615 3.39551 3.48264 3.69737 3.74040 3.89235 4.01498 4.06731 4.17174 4.21345 4.24841 4.34570 4.45070 4.45429 4.54701 4.59199 4.61637 4.68827 4.71670 4.80869 4.85208 4.90836 4.92610 4.97511 5.01485 5.03680 5.10512 5.13603 5.18033 5.23627 5.28271 5.32969 5.40788 5.59396 5.60202 5.73230 5.84893 6.01044 6.27917 6.36400 6.56178 6.79392 6.81053 6.84152 7.34896 8.87307 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.003008 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.841961 B = 9306.161944 C = 9580.904761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.096 4.096 5 C -0.083 4.083 6 C -0.136 4.136 7 C -0.141 4.141 8 C 0.514 3.486 9 O -0.527 6.527 10 N -0.570 5.570 11 C 0.072 3.928 12 C 0.113 3.887 13 H 0.055 0.945 14 O -0.550 6.550 15 C 0.029 3.971 16 N -0.542 5.542 17 C 0.040 3.960 18 C 0.212 3.788 19 C -0.524 4.524 20 H 0.062 0.938 21 C -0.001 4.001 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.274 1.274 25 H -0.279 1.279 26 H -0.262 1.262 27 C 0.531 3.469 28 O -0.480 6.480 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.379 0.621 46 H 0.031 0.969 47 H 0.103 0.897 48 H 0.082 0.918 49 H 0.056 0.944 50 H 0.014 0.986 51 H -0.005 1.005 52 H -0.041 1.041 53 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -4.666 -26.835 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.193 4.193 7 C -0.180 4.180 8 C 0.306 3.694 9 O -0.402 6.402 10 N -0.312 5.312 11 C -0.050 4.050 12 C 0.052 3.948 13 H 0.074 0.926 14 O -0.356 6.356 15 C -0.100 4.100 16 N -0.265 5.265 17 C -0.108 4.108 18 C 0.085 3.915 19 C -0.563 4.563 20 H 0.081 0.919 21 C -0.199 4.199 22 N -0.576 5.576 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.205 1.205 26 H -0.186 1.186 27 C 0.322 3.678 28 O -0.351 6.351 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.123 0.877 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.172 0.828 43 H 0.116 0.884 44 H 0.137 0.863 45 H 0.227 0.773 46 H 0.049 0.951 47 H 0.121 0.879 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.033 0.967 51 H 0.013 0.987 52 H -0.023 1.023 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.207 -4.786 -26.280 26.739 hybrid contribution 0.847 0.515 1.695 1.964 sum -0.360 -4.270 -24.584 24.955 Atomic orbital electron populations 1.21863 0.95104 1.02235 1.01335 1.21296 0.95700 0.96137 0.98250 1.22221 1.02166 0.95925 1.00253 1.21699 0.90209 1.02853 0.98590 1.21533 0.97760 0.90367 0.98956 1.21992 1.01910 1.04881 0.90475 1.22887 1.00592 0.98777 0.95747 1.21721 0.80773 0.82307 0.84626 1.90792 1.46132 1.71531 1.31753 1.46837 1.44084 1.10458 1.29780 1.22429 0.94530 0.93443 0.94629 1.21923 0.86542 0.93880 0.92424 0.92649 1.86626 1.31582 1.51644 1.65746 1.22696 0.94024 0.98538 0.94722 1.61916 1.49772 1.04874 1.09986 1.22248 0.96534 0.91264 1.00787 1.19345 0.93657 0.90583 0.87894 1.21466 1.21753 1.07229 1.05809 0.91947 1.25970 0.98755 0.94956 1.00178 1.70099 1.43718 1.14789 1.29015 0.85355 0.78606 0.78988 0.77513 1.20004 1.20454 1.18587 1.21255 0.76934 0.91594 0.78029 1.90704 1.59358 1.24330 1.60727 0.94411 0.92181 0.91405 0.88143 0.90554 0.93822 0.95255 0.87658 0.93853 0.87658 0.90312 0.91825 0.84791 0.82810 0.88402 0.86309 0.77291 0.95076 0.87892 0.89904 0.92554 0.96737 0.98665 1.02309 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.12 71.98 0.66 -1.34 16 2 C -0.10 -1.31 2.39 -10.79 -0.03 -1.33 16 3 C -0.15 -2.83 7.26 71.98 0.52 -2.31 16 4 C -0.10 -1.42 4.10 30.60 0.13 -1.29 16 5 C -0.08 -1.20 0.71 -52.32 -0.04 -1.24 16 6 C -0.14 -1.13 7.29 71.98 0.52 -0.61 16 7 C -0.14 -2.05 6.28 30.46 0.19 -1.86 16 8 C 0.51 13.48 8.08 87.99 0.71 14.19 16 9 O -0.53 -18.62 17.48 -2.89 -0.05 -18.67 16 10 N -0.57 -14.59 2.49 -756.65 -1.89 -16.48 16 11 C 0.07 1.95 5.25 86.38 0.45 2.40 16 12 C 0.11 4.02 3.30 30.59 0.10 4.12 16 13 H 0.06 2.54 6.78 -2.39 -0.02 2.52 16 14 O -0.55 -19.80 12.32 -148.98 -1.83 -21.63 16 15 C 0.03 1.05 4.66 86.30 0.40 1.45 16 16 N -0.54 -24.47 4.56 -927.08 -4.23 -28.70 16 17 C 0.04 1.56 9.36 127.69 1.20 2.75 16 18 C 0.21 12.00 4.55 85.56 0.39 12.39 16 19 C -0.52 -31.41 8.39 25.60 0.21 -31.20 16 20 H 0.06 3.67 7.16 -2.91 -0.02 3.65 16 21 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 22 N -0.94 -59.07 13.29 21.45 0.28 -58.78 16 23 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 24 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.53 11.83 5.95 87.99 0.52 12.35 16 28 O -0.48 -11.96 12.07 -2.86 -0.03 -12.00 16 29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.92 6.03 -2.38 -0.01 0.91 16 33 H 0.08 1.51 4.49 -2.39 -0.01 1.50 16 34 H 0.04 0.77 8.03 -2.39 -0.02 0.75 16 35 H 0.03 0.73 7.16 -2.39 -0.02 0.71 16 36 H 0.11 1.02 7.84 -2.39 -0.02 1.01 16 37 H 0.04 0.94 7.81 -2.39 -0.02 0.92 16 38 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 0.74 4.98 -2.39 -0.01 0.73 16 40 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.13 1.68 7.59 -2.38 -0.02 1.66 16 42 H 0.15 1.21 7.74 -2.39 -0.02 1.19 16 43 H 0.10 2.66 7.83 -2.38 -0.02 2.65 16 44 H 0.12 2.59 7.83 -2.39 -0.02 2.57 16 45 H 0.38 11.09 8.92 -74.06 -0.66 10.43 16 46 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 47 H 0.10 2.86 7.94 -2.39 -0.02 2.84 16 48 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 49 H 0.06 2.43 6.67 -2.39 -0.02 2.42 16 50 H 0.01 0.54 8.13 -2.39 -0.02 0.52 16 51 H 0.00 -0.29 6.63 -2.39 -0.02 -0.31 16 52 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 53 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -79.80 408.03 0.93 -78.87 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.24 Total: 20.23 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 6.41 Total: 8.90 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -5.83 Total: -103.96 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -1.92 Total: -52.30 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -79.80 0.93 -78.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414153089.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.123 kcal (2) G-P(sol) polarization free energy of solvation -79.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds