Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.52999 * 109.46928 * 119.99854 * 2 1 3 5 5 C 1.53004 * 109.47161 * 68.19920 * 4 2 1 6 6 H 1.09000 * 109.71050 * 316.50687 * 5 4 2 7 7 C 1.52888 * 109.61552 * 196.20848 * 5 4 2 8 8 O 1.42955 * 109.29559 * 188.11295 * 7 5 4 9 9 C 1.42970 * 114.16412 * 62.44964 * 8 7 5 10 10 C 1.53288 * 109.22738 * 297.41773 * 9 8 7 11 11 N 1.47146 * 109.67936 * 77.05162 * 5 4 2 12 12 C 1.34773 * 120.98353 * 350.27492 * 11 5 4 13 13 O 1.21350 * 120.00082 * 7.30360 * 12 11 5 14 14 C 1.49453 * 119.99814 * 187.29832 * 12 11 5 15 15 O 1.21348 * 120.00381 * 7.07198 * 14 12 11 16 16 N 1.34786 * 119.99665 * 186.79635 * 14 12 11 17 17 C 1.46497 * 119.99734 * 180.27865 * 16 14 12 18 18 C 1.53001 * 109.47065 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46736 * 299.99929 * 18 17 16 20 20 C 1.53001 * 109.47041 * 59.99564 * 18 17 16 21 21 C 1.50696 * 109.47295 * 179.97438 * 18 17 16 22 22 H 1.08008 * 119.99982 * 0.02562 * 21 18 17 23 23 C 1.37870 * 120.00311 * 179.97438 * 21 18 17 24 24 N 1.31517 * 119.99948 * 359.97438 * 23 21 18 25 25 Si 1.86798 * 120.00376 * 180.02562 * 23 21 18 26 26 H 1.48507 * 109.47499 * 89.99736 * 25 23 21 27 27 H 1.48500 * 109.47394 * 210.00013 * 25 23 21 28 28 H 1.48505 * 109.47175 * 329.99912 * 25 23 21 29 29 H 1.09001 * 109.47505 * 299.99955 * 1 2 3 30 30 H 1.09006 * 109.47331 * 60.00274 * 1 2 3 31 31 H 1.09003 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47232 * 239.99354 * 2 1 3 33 33 H 1.08999 * 109.47016 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46770 * 300.00070 * 3 2 1 35 35 H 1.08992 * 109.47109 * 59.99664 * 3 2 1 36 36 H 1.09007 * 109.47338 * 308.19787 * 4 2 1 37 37 H 1.08997 * 109.47103 * 188.19903 * 4 2 1 38 38 H 1.09003 * 109.58007 * 68.10288 * 7 5 4 39 39 H 1.09000 * 109.40988 * 308.02324 * 7 5 4 40 40 H 1.08999 * 109.51044 * 177.49074 * 9 8 7 41 41 H 1.08997 * 109.50845 * 57.34709 * 9 8 7 42 42 H 1.08999 * 109.68029 * 292.58079 * 10 9 8 43 43 H 1.08989 * 109.68560 * 172.02709 * 10 9 8 44 44 H 0.96990 * 119.99980 * 0.27503 * 16 14 12 45 45 H 1.09007 * 109.47139 * 299.99813 * 17 16 14 46 46 H 1.08994 * 109.47728 * 59.99738 * 17 16 14 47 47 H 1.09001 * 109.47347 * 60.00178 * 19 18 17 48 48 H 1.09007 * 109.46736 * 179.97438 * 19 18 17 49 49 H 1.09002 * 109.47077 * 299.99685 * 19 18 17 50 50 H 1.09007 * 109.46975 * 60.00333 * 20 18 17 51 51 H 1.09000 * 109.46947 * 179.97438 * 20 18 17 52 52 H 1.09001 * 109.47493 * 300.00099 * 20 18 17 53 53 H 0.97004 * 120.00309 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.7048 -2.2109 1.1507 6 1 0.6853 -2.3349 0.7858 7 6 1.8365 -2.8589 2.5292 8 8 1.7086 -4.2767 2.3988 9 6 2.7254 -4.8850 1.5987 10 6 2.6354 -4.3406 0.1685 11 7 2.6445 -2.8703 0.2302 12 6 3.4924 -2.1493 -0.5299 13 8 3.5829 -0.9502 -0.3673 14 6 4.3211 -2.8267 -1.5729 15 8 4.1400 -4.0000 -1.8243 16 7 5.2660 -2.1330 -2.2382 17 6 6.0743 -2.7954 -3.2649 18 6 7.0643 -1.7924 -3.8604 19 6 6.2951 -0.6287 -4.4890 20 6 7.9791 -1.2612 -2.7551 21 6 7.8961 -2.4739 -4.9161 22 1 7.7346 -3.5180 -5.1402 23 6 8.8627 -1.7644 -5.5966 24 7 9.0585 -0.4926 -5.3248 25 14 9.8934 -2.6090 -6.9057 26 1 9.2227 -2.4789 -8.2242 27 1 11.2338 -1.9728 -6.9672 28 1 10.0432 -4.0470 -6.5663 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.5619 -0.2990 2.1332 37 1 3.1200 -0.5961 1.3256 38 1 1.0531 -2.4815 3.1865 39 1 2.8125 -2.6185 2.9507 40 1 2.5815 -5.9654 1.5867 41 1 3.7049 -4.6520 2.0160 42 1 1.7111 -4.6827 -0.2970 43 1 3.4899 -4.6890 -0.4113 44 1 5.4108 -1.1952 -2.0373 45 1 6.6226 -3.6243 -2.8169 46 1 5.4225 -3.1743 -4.0521 47 1 5.6938 -0.1358 -3.7251 48 1 7.0005 0.0862 -4.9129 49 1 5.6434 -1.0071 -5.2765 50 1 8.5271 -2.0903 -2.3072 51 1 8.6847 -0.5469 -3.1794 52 1 7.3778 -0.7683 -1.9912 53 1 9.7388 0.0066 -5.8033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483959.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -101.082342 kcal Electronic energy + Delta-G solvation = -32193.123186 eV Core-core repulsion = 28065.777668 eV Total energy + Delta-G solvation = -4127.345518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42768 -40.52583 -39.35321 -38.29159 -37.02280 -35.92043 -34.90411 -32.84098 -32.74491 -29.71615 -28.02802 -27.78512 -27.59831 -27.17627 -27.16256 -25.07053 -24.07847 -22.49463 -21.29204 -20.81092 -20.50180 -18.91863 -18.09400 -17.77964 -17.28814 -17.09999 -16.95588 -16.72450 -16.58225 -16.10279 -16.05764 -15.63298 -15.21733 -15.13467 -14.80546 -14.74280 -14.34061 -14.21926 -14.20335 -14.01674 -13.25732 -13.22163 -13.17543 -13.10170 -12.92061 -12.88745 -12.70620 -12.58793 -12.37067 -12.29290 -12.24317 -12.12368 -11.68348 -11.52420 -11.47268 -11.39381 -11.32135 -11.25384 -10.97158 -10.73545 -10.41355 -10.12755 -9.87083 -9.56860 -8.02177 -6.18693 0.36005 1.26793 1.43800 1.47118 1.54844 2.12721 2.38285 2.50217 2.84188 3.21867 3.33202 3.59342 3.86329 3.91752 4.01730 4.14874 4.19390 4.29602 4.34046 4.35562 4.46652 4.47015 4.64632 4.66403 4.67526 4.80234 4.81998 4.84812 4.89564 4.94587 4.96678 5.02678 5.03194 5.06705 5.10732 5.16069 5.21067 5.25951 5.32430 5.44668 5.50252 5.59519 5.63819 5.66916 5.71210 5.95896 6.07779 6.10473 6.18252 6.27268 6.40616 6.74543 6.85931 6.98641 7.49511 8.96904 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.002902 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.719848 B = 9646.493323 C =10810.406987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.107 4.107 5 C 0.108 3.892 6 H 0.091 0.909 7 C 0.053 3.947 8 O -0.391 6.391 9 C 0.050 3.950 10 C 0.041 3.959 11 N -0.580 5.580 12 C 0.502 3.498 13 O -0.501 6.501 14 C 0.493 3.507 15 O -0.542 6.542 16 N -0.679 5.679 17 C 0.144 3.856 18 C 0.051 3.949 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.527 4.527 22 H 0.051 0.949 23 C 0.027 3.973 24 N -0.901 5.901 25 Si 0.947 3.053 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.056 0.944 40 H 0.128 0.872 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.413 0.587 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.029 0.971 48 H 0.062 0.938 49 H 0.021 0.979 50 H 0.023 0.977 51 H 0.062 0.938 52 H 0.029 0.971 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 -1.849 16.314 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.190 4.190 4 C -0.144 4.144 5 C 0.006 3.994 6 H 0.109 0.891 7 C -0.024 4.024 8 O -0.309 6.309 9 C -0.027 4.027 10 C -0.080 4.080 11 N -0.315 5.315 12 C 0.285 3.715 13 O -0.377 6.377 14 C 0.275 3.725 15 O -0.423 6.423 16 N -0.330 5.330 17 C 0.021 3.979 18 C 0.051 3.949 19 C -0.180 4.180 20 C -0.179 4.179 21 C -0.565 4.565 22 H 0.069 0.931 23 C -0.173 4.173 24 N -0.539 5.539 25 Si 0.774 3.226 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.149 0.851 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.250 0.750 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.081 0.919 49 H 0.040 0.960 50 H 0.042 0.958 51 H 0.081 0.919 52 H 0.048 0.952 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.200 -1.970 16.242 23.024 hybrid contribution 1.104 0.157 -1.277 1.695 sum -15.096 -1.813 14.965 21.334 Atomic orbital electron populations 1.21976 0.95332 1.01432 1.01974 1.21214 0.94440 0.96451 0.98171 1.21651 1.00648 0.95642 1.01024 1.21991 1.03093 0.91014 0.98318 1.22331 0.92868 0.94090 0.90134 0.89132 1.23108 1.03676 0.80623 0.94994 1.87946 1.51380 1.20677 1.70938 1.23128 0.91377 0.99593 0.88600 1.23432 1.07013 0.77905 0.99666 1.47950 1.35943 1.08043 1.39570 1.19874 0.81902 0.86929 0.82761 1.90831 1.65270 1.14098 1.67538 1.20611 0.81620 0.86820 0.83473 1.90484 1.68988 1.16397 1.66405 1.46074 1.34321 1.15379 1.37237 1.21520 0.92149 0.95846 0.88343 1.18364 0.91361 0.91995 0.93211 1.21691 0.98299 0.99682 0.98330 1.21683 0.99948 0.99940 0.96369 1.21251 1.18515 0.96571 1.20177 0.93055 1.25484 0.97871 0.95410 0.98521 1.69925 1.33658 1.08293 1.42046 0.85729 0.78200 0.78854 0.79838 1.20600 1.21118 1.19698 0.91480 0.93396 0.92857 0.92756 0.93703 0.93785 0.92141 0.90007 0.90128 0.85102 0.92546 0.85440 0.92704 0.90205 0.85127 0.74963 0.92627 0.92958 0.95213 0.91872 0.95998 0.95772 0.91928 0.95170 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.02 71.98 0.65 -1.92 16 2 C -0.08 -1.80 1.86 -10.80 -0.02 -1.82 16 3 C -0.13 -2.86 9.02 71.98 0.65 -2.21 16 4 C -0.11 -2.01 3.67 30.60 0.11 -1.90 16 5 C 0.11 1.98 3.03 44.83 0.14 2.12 16 6 H 0.09 1.61 6.20 -2.39 -0.01 1.60 16 7 C 0.05 0.82 6.20 71.94 0.45 1.26 16 8 O -0.39 -7.23 10.74 -148.98 -1.60 -8.83 16 9 C 0.05 0.86 6.98 72.08 0.50 1.37 16 10 C 0.04 0.88 6.14 86.35 0.53 1.41 16 11 N -0.58 -13.45 3.03 -795.86 -2.41 -15.86 16 12 C 0.50 14.12 6.88 87.27 0.60 14.72 16 13 O -0.50 -14.48 9.04 -3.25 -0.03 -14.51 16 14 C 0.49 16.12 7.74 87.27 0.68 16.80 16 15 O -0.54 -19.03 13.21 -3.24 -0.04 -19.07 16 16 N -0.68 -23.66 4.95 -464.40 -2.30 -25.95 16 17 C 0.14 5.82 4.50 86.38 0.39 6.21 16 18 C 0.05 2.33 0.50 -52.93 -0.03 2.31 16 19 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 20 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 21 C -0.53 -27.09 8.01 25.60 0.21 -26.88 16 22 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 23 C 0.03 1.40 5.15 84.65 0.44 1.83 16 24 N -0.90 -47.90 9.35 21.45 0.20 -47.70 16 25 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 0.87 6.42 -2.39 -0.02 0.86 16 32 H 0.05 1.49 5.43 -2.40 -0.01 1.48 16 33 H 0.04 1.12 7.48 -2.39 -0.02 1.10 16 34 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.15 8.03 -2.38 -0.02 1.14 16 37 H 0.08 1.89 5.90 -3.97 -0.02 1.87 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 40 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.13 3.34 4.49 -34.88 -0.16 3.18 16 44 H 0.41 14.03 5.65 -92.72 -0.52 13.51 16 45 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 48 H 0.06 3.17 6.07 -2.38 -0.01 3.15 16 49 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 52 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 53 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -56.48 393.41 2.53 -53.96 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.23 Total: 30.49 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.45 Total: 3.55 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -4.51 Total: -89.51 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.67 Total: -42.42 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -56.48 2.53 -53.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483959.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.123 kcal (2) G-P(sol) polarization free energy of solvation -56.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds