Wall clock time and date at job start Sat Apr 11 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47000 * 2 1 4 4 C 1.53005 * 112.90429 * 43.52903 * 3 2 1 5 5 C 1.52997 * 109.47199 * 66.05993 * 4 3 2 6 6 C 1.53776 * 113.61410 * 272.28251 * 3 2 1 7 7 H 1.09003 * 113.61470 * 156.34022 * 6 3 2 8 8 N 1.46499 * 113.61861 * 25.42577 * 6 3 2 9 9 C 1.34778 * 120.00021 * 158.00111 * 8 6 3 10 10 O 1.21587 * 120.00158 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99835 * 180.02562 * 9 8 6 12 12 C 1.47022 * 125.64935 * 0.02562 * 11 9 8 13 13 C 1.54322 * 107.26776 * 181.02917 * 12 11 9 14 14 C 1.55152 * 102.94463 * 22.19303 * 13 12 11 15 15 O 1.42901 * 111.00528 * 82.57373 * 14 13 12 16 16 C 1.50703 * 111.00388 * 206.38272 * 14 13 12 17 17 H 1.08001 * 119.99436 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00071 * 179.97438 * 16 14 13 19 19 N 1.31511 * 120.00118 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00084 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47453 * 89.99739 * 20 18 16 22 22 H 1.48498 * 109.47156 * 210.00334 * 20 18 16 23 23 H 1.48506 * 109.46997 * 329.99681 * 20 18 16 24 24 C 1.47422 * 125.64603 * 179.71765 * 11 9 8 25 25 C 1.53792 * 87.08049 * 270.87984 * 6 3 2 26 26 C 1.53777 * 113.61668 * 174.78112 * 3 2 1 27 27 H 1.08997 * 113.69398 * 203.67755 * 26 3 2 28 28 O 1.42908 * 113.61314 * 334.56898 * 26 3 2 29 29 C 1.42904 * 113.99713 * 207.00401 * 28 26 3 30 30 H 1.09007 * 109.46893 * 173.97126 * 1 2 3 31 31 H 1.09000 * 109.46952 * 293.96479 * 1 2 3 32 32 H 1.08993 * 109.47605 * 53.96872 * 1 2 3 33 33 H 1.09001 * 109.47208 * 240.00208 * 2 1 3 34 34 H 1.09001 * 109.47418 * 119.99756 * 2 1 3 35 35 H 1.09000 * 109.46865 * 186.06016 * 4 3 2 36 36 H 1.08997 * 109.47175 * 306.05997 * 4 3 2 37 37 H 1.09002 * 109.46999 * 299.36919 * 5 4 3 38 38 H 1.09006 * 109.47167 * 59.36461 * 5 4 3 39 39 H 1.08996 * 109.47422 * 179.36570 * 5 4 3 40 40 H 0.97001 * 119.99958 * 338.00068 * 8 6 3 41 41 H 1.08999 * 109.87929 * 300.44122 * 12 11 9 42 42 H 1.08991 * 109.88325 * 61.45336 * 12 11 9 43 43 H 1.09010 * 110.71773 * 140.55609 * 13 12 11 44 44 H 1.08999 * 110.71770 * 263.82339 * 13 12 11 45 45 H 0.96699 * 114.00284 * 179.97438 * 15 14 13 46 46 H 0.97002 * 120.00197 * 179.97438 * 19 18 16 47 47 H 1.09004 * 110.36619 * 274.74217 * 24 11 9 48 48 H 1.08998 * 110.37049 * 37.06435 * 24 11 9 49 49 H 1.08997 * 113.61334 * 220.02298 * 25 6 3 50 50 H 1.09002 * 113.61126 * 89.11297 * 25 6 3 51 51 H 1.08995 * 109.46981 * 299.99673 * 29 28 26 52 52 H 1.09000 * 109.46662 * 179.97438 * 29 28 26 53 53 H 1.08994 * 109.47005 * 60.00253 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.2750 2.3446 0.9707 5 6 1.5407 1.8893 2.4070 6 6 2.1924 2.0420 -1.4079 7 1 2.1512 3.1311 -1.4255 8 7 1.3192 1.4220 -2.4075 9 6 1.0048 2.0902 -3.5350 10 8 1.4463 3.2074 -3.7227 11 7 0.2010 1.5199 -4.4544 12 6 -0.3999 0.1818 -4.3551 13 6 -1.2154 -0.0509 -5.6445 14 6 -0.5688 0.9399 -6.6482 15 8 0.6113 0.3824 -7.2301 16 6 -1.5526 1.3475 -7.7146 17 1 -2.5572 0.9511 -7.7023 18 6 -1.1705 2.2271 -8.7051 19 7 0.0526 2.7101 -8.7197 20 14 -2.3901 2.7329 -10.0265 21 1 -3.1285 3.9421 -9.5820 22 1 -1.6607 3.0329 -11.2847 23 1 -3.3508 1.6255 -10.2634 24 6 -0.2262 2.1372 -5.7231 25 6 3.6238 1.4798 -1.4068 26 6 3.5682 1.5557 0.1282 27 1 3.9045 2.5113 0.5305 28 8 4.1725 0.4361 0.7789 29 6 5.4009 0.7425 1.4417 30 1 -0.3633 -1.0221 -0.1079 31 1 -0.3633 0.4174 0.9391 32 1 -0.3634 0.6044 -0.8310 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6086 3.3751 0.8486 36 1 0.2073 2.2811 0.7610 37 1 1.1969 0.8626 2.5321 38 1 2.6098 1.9422 2.6131 39 1 1.0048 2.5388 3.0991 40 1 0.9673 0.5305 -2.2579 41 1 0.3837 -0.5711 -4.2712 42 1 -1.0551 0.1333 -3.4855 43 1 -1.1041 -1.0784 -5.9910 44 1 -2.2660 0.1919 -5.4854 45 1 1.0502 0.9654 -7.8647 46 1 0.3216 3.3287 -9.4168 47 1 -1.1061 2.7608 -5.5642 48 1 0.5851 2.7263 -6.1506 49 1 4.3575 2.1525 -1.8509 50 1 3.6935 0.4622 -1.7913 51 1 6.1211 1.1198 0.7157 52 1 5.7954 -0.1589 1.9106 53 1 5.2229 1.5004 2.2045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591989191.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:55 Heat of formation + Delta-G solvation = -127.488764 kcal Electronic energy + Delta-G solvation = -32062.754466 eV Core-core repulsion = 27934.263880 eV Total energy + Delta-G solvation = -4128.490586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.05536 -40.75869 -38.96175 -37.61554 -36.06564 -34.92593 -34.14566 -33.65846 -32.09123 -31.53314 -29.57087 -27.83436 -27.01862 -26.57922 -25.05984 -24.40602 -23.74595 -22.29794 -21.45032 -21.00869 -19.79538 -19.13542 -18.61031 -17.92872 -17.10792 -16.87365 -16.82106 -16.60663 -16.29285 -16.15373 -15.49598 -15.37486 -15.22032 -15.02341 -14.72618 -14.64491 -14.33509 -13.81432 -13.76890 -13.65749 -13.48605 -13.36282 -13.21612 -12.99432 -12.85461 -12.83573 -12.68406 -12.51197 -12.31370 -12.27853 -12.21102 -12.12066 -12.08215 -11.80809 -11.48339 -11.44692 -11.30594 -11.26608 -11.15926 -10.64502 -10.32865 -10.28766 -10.02811 -9.30223 -8.24837 -6.41854 1.42669 1.44595 1.54580 1.68084 2.14376 2.38649 2.81960 3.01308 3.18655 3.31820 3.47439 3.73339 3.80859 3.82459 4.07656 4.12396 4.17722 4.24911 4.32643 4.36035 4.41411 4.47962 4.54126 4.59348 4.61733 4.62109 4.72626 4.76514 4.77130 4.87852 4.90775 4.94462 5.01390 5.05264 5.09271 5.11838 5.13933 5.26838 5.28603 5.30883 5.34678 5.40712 5.42988 5.45820 5.61665 5.63215 5.77486 6.03346 6.18462 6.32015 6.65502 7.07204 7.30817 7.39921 7.58620 8.80791 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002627 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.340221 B =10654.160866 C =10918.039086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.091 4.091 3 C -0.065 4.065 4 C -0.112 4.112 5 C -0.140 4.140 6 C 0.141 3.859 7 H 0.095 0.905 8 N -0.714 5.714 9 C 0.709 3.291 10 O -0.644 6.644 11 N -0.632 5.632 12 C 0.107 3.893 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.554 4.554 17 H 0.072 0.928 18 C 0.023 3.977 19 N -0.919 5.919 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.126 3.874 25 C -0.175 4.175 26 C 0.087 3.913 27 H 0.102 0.898 28 O -0.380 6.380 29 C 0.023 3.977 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.407 0.593 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.377 0.623 46 H 0.270 0.730 47 H 0.043 0.957 48 H 0.036 0.964 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.041 0.959 52 H 0.097 0.903 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -5.916 23.302 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.129 4.129 3 C -0.066 4.066 4 C -0.149 4.149 5 C -0.198 4.198 6 C 0.035 3.965 7 H 0.113 0.887 8 N -0.371 5.371 9 C 0.412 3.588 10 O -0.527 6.527 11 N -0.369 5.369 12 C -0.015 4.015 13 C -0.148 4.148 14 C 0.192 3.808 15 O -0.399 6.399 16 C -0.592 4.592 17 H 0.090 0.910 18 C -0.177 4.177 19 N -0.559 5.559 20 Si 0.792 3.208 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.188 1.188 24 C 0.002 3.998 25 C -0.214 4.214 26 C 0.028 3.972 27 H 0.120 0.880 28 O -0.298 6.298 29 C -0.073 4.073 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.227 0.773 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.059 0.941 52 H 0.115 0.885 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.483 -5.680 23.520 24.608 hybrid contribution -0.010 1.168 -1.639 2.013 sum 4.473 -4.512 21.881 22.784 Atomic orbital electron populations 1.21954 0.95029 1.02297 1.02225 1.21097 0.95886 0.93129 1.02778 1.22539 0.94278 0.97321 0.92442 1.21554 1.00386 0.97994 0.94989 1.21667 1.01685 1.01625 0.94786 1.22253 0.89269 0.97780 0.87196 0.88658 1.44994 1.53508 1.20275 1.18307 1.15810 0.78844 0.83677 0.80515 1.90829 1.60584 1.21452 1.79836 1.47833 1.49942 1.18692 1.20401 1.22094 0.96898 0.83112 0.99368 1.22598 0.99183 1.00307 0.92669 1.19893 0.83303 0.88161 0.89463 1.86048 1.43142 1.48190 1.62550 1.21837 0.98994 1.27406 1.10985 0.91019 1.25865 0.97123 0.94858 0.99856 1.69694 1.18943 1.32172 1.35060 0.85421 0.78794 0.78598 0.78005 1.20272 1.21008 1.18800 1.22737 0.96964 0.97958 0.82135 1.24018 0.97280 1.02066 0.98033 1.23405 0.92805 0.90388 0.90582 0.88018 1.87910 1.38071 1.33514 1.70327 1.22959 0.85479 1.02660 0.96238 0.91387 0.91363 0.93703 0.92628 0.89798 0.91989 0.91234 0.92199 0.92736 0.92175 0.75399 0.91404 0.89328 0.89672 0.89072 0.77279 0.92052 0.93902 0.94508 0.91664 0.89551 0.94053 0.88506 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.45 71.98 0.61 -1.88 16 2 C -0.09 -1.59 3.75 30.60 0.11 -1.47 16 3 C -0.06 -1.22 0.61 -51.65 -0.03 -1.25 16 4 C -0.11 -1.85 4.79 30.59 0.15 -1.70 16 5 C -0.14 -1.83 9.51 71.98 0.68 -1.15 16 6 C 0.14 3.71 3.61 45.52 0.16 3.88 16 7 H 0.10 2.89 7.43 -2.39 -0.02 2.87 16 8 N -0.71 -21.74 4.60 -455.28 -2.09 -23.83 16 9 C 0.71 29.69 8.49 179.05 1.52 31.21 16 10 O -0.64 -32.71 16.24 -3.99 -0.06 -32.77 16 11 N -0.63 -26.63 3.32 -829.32 -2.76 -29.38 16 12 C 0.11 3.57 6.15 86.73 0.53 4.10 16 13 C -0.11 -4.16 6.12 31.78 0.19 -3.96 16 14 C 0.23 11.39 0.89 -10.07 -0.01 11.38 16 15 O -0.59 -31.21 13.19 -148.98 -1.97 -33.18 16 16 C -0.55 -28.89 8.25 25.60 0.21 -28.67 16 17 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 18 C 0.02 1.23 5.29 84.65 0.45 1.68 16 19 N -0.92 -50.87 10.72 21.45 0.23 -50.64 16 20 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 24 C 0.13 6.34 5.64 86.93 0.49 6.83 16 25 C -0.17 -4.21 7.36 31.12 0.23 -3.98 16 26 C 0.09 1.60 3.00 31.12 0.09 1.69 16 27 H 0.10 1.61 7.85 -2.39 -0.02 1.59 16 28 O -0.38 -6.80 9.59 -148.98 -1.43 -8.23 16 29 C 0.02 0.28 10.86 113.37 1.23 1.51 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 0.96 6.38 -2.39 -0.02 0.95 16 32 H 0.04 0.84 6.57 -2.39 -0.02 0.82 16 33 H 0.06 1.07 6.45 -2.39 -0.02 1.06 16 34 H 0.08 1.39 7.25 -2.39 -0.02 1.38 16 35 H 0.06 1.05 8.05 -2.39 -0.02 1.03 16 36 H 0.07 1.21 6.44 -2.39 -0.02 1.19 16 37 H 0.06 0.76 6.92 -2.39 -0.02 0.75 16 38 H 0.05 0.70 7.59 -2.38 -0.02 0.68 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.41 10.47 4.45 -92.71 -0.41 10.06 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 44 H 0.09 3.17 8.01 -2.39 -0.02 3.15 16 45 H 0.38 21.13 6.93 -74.06 -0.51 20.62 16 46 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.04 2.22 8.04 -2.38 -0.02 2.20 16 48 H 0.04 2.14 7.64 -2.39 -0.02 2.13 16 49 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.09 2.19 7.72 -2.39 -0.02 2.17 16 51 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -67.17 404.39 0.56 -66.61 By element: Atomic # 1 Polarization: 49.21 SS G_CDS: -0.02 Total: 49.19 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 6.63 Total: 18.22 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -4.62 Total: -103.85 kcal Atomic # 8 Polarization: -70.72 SS G_CDS: -3.46 Total: -74.18 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -67.17 0.56 -66.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591989191.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.875 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds