Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 117.00068 * 2 1 4 4 O 1.20833 * 120.00264 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99910 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46940 * 60.00501 * 5 3 2 7 7 C 1.52996 * 109.47693 * 300.00637 * 5 3 2 8 8 C 1.53004 * 109.47342 * 180.02562 * 5 3 2 9 9 C 1.52997 * 109.47383 * 180.02562 * 8 5 3 10 10 N 1.46498 * 109.46938 * 180.02562 * 9 8 5 11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 8 12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9 13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9 14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11 16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13 17 17 C 1.53002 * 109.41659 * 178.67459 * 16 15 14 18 18 C 1.50705 * 109.47219 * 295.13248 * 17 16 15 19 19 H 1.08004 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00149 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99932 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47110 * 90.00084 * 22 20 18 24 24 H 1.48504 * 109.47198 * 210.00044 * 22 20 18 25 25 H 1.48500 * 109.47417 * 330.00188 * 22 20 18 26 26 C 1.53040 * 109.60905 * 298.70899 * 16 15 14 27 27 C 1.46926 * 120.63157 * 354.78914 * 13 11 10 28 28 H 1.08998 * 109.47323 * 59.99512 * 1 2 3 29 29 H 1.09002 * 109.47722 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46730 * 299.99745 * 1 2 3 31 31 H 1.08999 * 109.47555 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.46966 * 299.99996 * 6 5 3 33 33 H 1.09004 * 109.47035 * 59.99726 * 6 5 3 34 34 H 1.08999 * 109.46894 * 300.00082 * 7 5 3 35 35 H 1.08996 * 109.47028 * 59.99505 * 7 5 3 36 36 H 1.08994 * 109.47663 * 179.97438 * 7 5 3 37 37 H 1.08999 * 109.46688 * 60.00260 * 8 5 3 38 38 H 1.09004 * 109.47092 * 300.00556 * 8 5 3 39 39 H 1.09007 * 109.46974 * 60.00355 * 9 8 5 40 40 H 1.08998 * 109.47220 * 300.00624 * 9 8 5 41 41 H 0.96993 * 120.00686 * 359.97438 * 10 9 8 42 42 H 1.08999 * 109.58363 * 246.19988 * 14 13 11 43 43 H 1.09002 * 109.58625 * 6.48116 * 14 13 11 44 44 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 45 45 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 46 46 H 1.08994 * 109.42367 * 58.75582 * 16 15 14 47 47 H 1.09008 * 109.47043 * 55.12644 * 17 16 15 48 48 H 1.08992 * 109.47289 * 175.12966 * 17 16 15 49 49 H 0.97001 * 120.00130 * 180.02562 * 21 20 18 50 50 H 1.08993 * 109.50186 * 301.42491 * 26 16 15 51 51 H 1.09004 * 109.52060 * 181.34332 * 26 16 15 52 52 H 1.09010 * 109.58451 * 353.37613 * 27 13 11 53 53 H 1.08999 * 109.58904 * 113.65827 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1138 0.5810 -1.2484 7 6 4.1130 0.5814 1.2500 8 6 4.0002 2.7420 0.0011 9 6 5.5281 2.8220 0.0011 10 7 5.9435 4.2269 0.0022 11 6 7.2539 4.5421 0.0018 12 8 8.0903 3.6646 -0.0908 13 7 7.6372 5.8302 0.1042 14 6 9.0592 6.1811 0.2202 15 6 9.4087 7.2014 -0.8678 16 6 8.4527 8.3959 -0.7629 17 6 8.8175 9.4341 -1.8260 18 6 10.1882 9.9894 -1.5364 19 1 10.7435 9.6374 -0.6796 20 6 10.7334 10.9469 -2.3653 21 7 11.9294 11.4318 -2.1123 22 14 9.7732 11.5552 -3.8477 23 1 8.9445 12.7233 -3.4553 24 1 10.7194 11.9572 -4.9193 25 1 8.8925 10.4688 -4.3469 26 6 7.0141 7.9234 -0.9843 27 6 6.6409 6.9101 0.1023 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 5.2023 0.6384 -1.2483 32 1 3.8047 -0.4642 -1.2484 33 1 3.7244 1.0750 -2.1386 34 1 3.7229 1.0756 2.1398 35 1 3.8039 -0.4639 1.2501 36 1 5.2015 0.6380 1.2502 37 1 3.6102 3.2358 0.8911 38 1 3.6108 3.2364 -0.8889 39 1 5.9178 2.3283 -0.8892 40 1 5.9179 2.3275 0.8908 41 1 5.2755 4.9302 0.0024 42 1 9.2496 6.6143 1.2021 43 1 9.6681 5.2863 0.0912 44 1 10.4358 7.5401 -0.7324 45 1 9.3044 6.7374 -1.8486 46 1 8.5396 8.8439 0.2269 47 1 8.8165 8.9632 -2.8091 48 1 8.0870 10.2428 -1.8098 49 1 12.3128 12.1056 -2.6952 50 1 6.9323 7.4529 -1.9640 51 1 6.3383 8.7772 -0.9331 52 1 5.6542 6.4966 -0.1070 53 1 6.6324 7.4011 1.0754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591994731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -154.462092 kcal Electronic energy + Delta-G solvation = -30114.804929 eV Core-core repulsion = 25985.144691 eV Total energy + Delta-G solvation = -4129.660238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88303 -41.39465 -39.06897 -38.26592 -37.30213 -35.73149 -35.34059 -33.98891 -32.01763 -30.69557 -29.61313 -28.51520 -28.35288 -26.35494 -25.64781 -24.17789 -23.44986 -22.98046 -21.40740 -20.80703 -20.15035 -19.09855 -18.66114 -18.33572 -17.92553 -17.42742 -17.04704 -16.83510 -16.35067 -15.83990 -15.67204 -15.40739 -15.14891 -14.96687 -14.81172 -14.75182 -14.51683 -14.42332 -14.25486 -14.09474 -13.70643 -13.65116 -13.43891 -13.14998 -12.94686 -12.87112 -12.81456 -12.55428 -12.41469 -12.35940 -12.16379 -12.00476 -11.97451 -11.92480 -11.78927 -11.70128 -11.39381 -11.30080 -11.23260 -11.09165 -10.87108 -10.70256 -10.17727 -9.42540 -8.24603 -6.26408 1.11068 1.35673 1.38288 1.49220 1.52972 1.81132 2.13893 2.38401 2.91488 3.10981 3.47757 3.67427 3.71785 3.91444 3.97754 4.05612 4.08278 4.11383 4.23217 4.24159 4.29959 4.32148 4.42862 4.53988 4.56614 4.66462 4.68816 4.75809 4.76669 4.81416 4.85804 4.87931 4.94389 4.96166 4.97356 5.03545 5.09391 5.20452 5.25618 5.28084 5.31577 5.33308 5.36275 5.44239 5.52739 5.62130 5.73821 5.76250 5.99900 6.35548 6.66139 6.81514 6.97196 7.37304 7.55387 8.91897 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.001856 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.253683 B =15082.890092 C =15725.721343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.045 4.045 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.104 4.104 9 C 0.139 3.861 10 N -0.737 5.737 11 C 0.703 3.297 12 O -0.635 6.635 13 N -0.625 5.625 14 C 0.137 3.863 15 C -0.112 4.112 16 C -0.069 4.069 17 C -0.007 4.007 18 C -0.518 4.518 19 H 0.038 0.962 20 C 0.001 3.999 21 N -0.953 5.953 22 Si 0.946 3.054 23 H -0.266 1.266 24 H -0.289 1.289 25 H -0.250 1.250 26 C -0.126 4.126 27 C 0.115 3.885 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.408 0.592 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.010 0.990 48 H 0.020 0.980 49 H 0.263 0.737 50 H 0.057 0.943 51 H 0.090 0.910 52 H 0.102 0.898 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.648 -24.721 5.975 36.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.046 4.046 6 C -0.204 4.204 7 C -0.203 4.203 8 C -0.142 4.142 9 C 0.015 3.985 10 N -0.395 5.395 11 C 0.405 3.595 12 O -0.516 6.516 13 N -0.361 5.361 14 C 0.013 3.987 15 C -0.150 4.150 16 C -0.088 4.088 17 C -0.045 4.045 18 C -0.556 4.556 19 H 0.056 0.944 20 C -0.195 4.195 21 N -0.595 5.595 22 Si 0.770 3.230 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.174 1.174 26 C -0.164 4.164 27 C -0.007 4.007 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.246 0.754 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.029 0.971 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.109 0.891 52 H 0.120 0.880 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.190 -24.973 5.873 35.954 hybrid contribution -0.133 1.271 -0.783 1.499 sum -25.323 -23.702 5.090 35.056 Atomic orbital electron populations 1.23550 0.74995 1.05702 1.02422 1.86495 1.24705 1.32700 1.83461 1.24031 0.92327 0.81170 0.70899 1.90667 1.67905 1.37354 1.46622 1.20437 0.85858 0.97578 1.00770 1.21995 1.02742 1.01351 0.94293 1.21989 1.02764 1.01329 0.94201 1.21594 0.93828 0.94366 1.04449 1.21344 0.93673 0.80789 1.02715 1.45153 1.04821 1.09573 1.79967 1.15969 0.83323 0.82645 0.77607 1.90862 1.52457 1.48318 1.60003 1.47359 1.08024 1.04328 1.76434 1.21398 0.80394 0.98210 0.98663 1.21815 0.99877 0.95352 0.97990 1.20975 0.94257 0.94505 0.99071 1.19590 0.94551 0.94878 0.95447 1.21501 1.01913 1.21129 1.11037 0.94402 1.25983 0.95783 0.96683 1.01081 1.70072 1.18077 1.30851 1.40465 0.85719 0.78790 0.79472 0.78996 1.19101 1.21558 1.17351 1.21977 0.96315 0.99263 0.98821 1.21827 0.91181 0.87649 1.00035 0.92143 0.85082 0.92030 0.89744 0.90075 0.92134 0.91864 0.90130 0.89673 0.90056 0.90434 0.91487 0.91041 0.75382 0.90803 0.90629 0.92361 0.93600 0.92084 0.97124 0.96144 0.92803 0.92424 0.89119 0.88013 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.73 10.37 -51.36 -0.53 -5.26 16 3 C 0.47 7.43 6.55 71.23 0.47 7.89 16 4 O -0.54 -11.53 15.73 21.94 0.35 -11.18 16 5 C -0.04 -0.52 0.74 -52.93 -0.04 -0.56 16 6 C -0.15 -1.46 8.05 71.98 0.58 -0.88 16 7 C -0.15 -1.33 8.05 71.98 0.58 -0.76 16 8 C -0.10 -1.35 3.67 30.59 0.11 -1.23 16 9 C 0.14 2.23 4.97 86.38 0.43 2.66 16 10 N -0.74 -14.33 5.47 -478.54 -2.62 -16.95 16 11 C 0.70 19.85 8.29 179.05 1.49 21.34 16 12 O -0.63 -23.02 15.77 -3.97 -0.06 -23.08 16 13 N -0.63 -16.91 2.97 -836.89 -2.49 -19.39 16 14 C 0.14 4.28 6.43 86.36 0.56 4.83 16 15 C -0.11 -4.12 5.21 30.78 0.16 -3.96 16 16 C -0.07 -2.50 2.10 -10.66 -0.02 -2.52 16 17 C -0.01 -0.33 3.52 29.85 0.10 -0.22 16 18 C -0.52 -29.19 8.94 25.60 0.23 -28.96 16 19 H 0.04 2.34 7.30 -2.91 -0.02 2.32 16 20 C 0.00 0.05 5.47 84.65 0.46 0.51 16 21 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 22 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 26 C -0.13 -3.30 5.36 30.67 0.16 -3.14 16 27 C 0.12 2.39 6.39 86.36 0.55 2.94 16 28 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 29 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 31 H 0.08 0.81 6.43 -2.39 -0.02 0.79 16 32 H 0.08 0.67 8.11 -2.39 -0.02 0.65 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.62 8.11 -2.39 -0.02 0.60 16 36 H 0.08 0.73 6.43 -2.39 -0.02 0.71 16 37 H 0.08 1.06 8.10 -2.39 -0.02 1.04 16 38 H 0.08 1.07 8.10 -2.38 -0.02 1.05 16 39 H 0.07 1.18 6.43 -2.38 -0.02 1.16 16 40 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 41 H 0.41 5.90 5.96 -92.71 -0.55 5.35 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.08 2.56 6.99 -2.39 -0.02 2.54 16 44 H 0.06 2.47 6.93 -2.39 -0.02 2.46 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.01 0.48 7.20 -2.38 -0.02 0.47 16 48 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 49 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 52 H 0.10 1.43 5.65 -2.38 -0.01 1.42 16 53 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -77.16 410.40 4.13 -73.03 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.29 Total: 16.84 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 7.02 Total: -0.64 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -4.80 Total: -96.04 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.25 Total: -39.52 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -77.16 4.13 -73.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591994731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.433 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds