Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46976 * 2 1 4 4 C 1.53004 * 109.47163 * 120.00262 * 2 1 3 5 5 C 1.53001 * 109.46975 * 65.00019 * 4 2 1 6 6 H 1.08998 * 109.47933 * 305.02395 * 5 4 2 7 7 C 1.53089 * 109.47629 * 185.00315 * 5 4 2 8 8 C 1.53183 * 109.16220 * 182.39788 * 7 5 4 9 9 H 1.08999 * 109.54232 * 176.93165 * 8 7 5 10 10 N 1.46497 * 109.54252 * 297.11062 * 8 7 5 11 11 C 1.34775 * 120.00155 * 204.82577 * 10 8 7 12 12 O 1.21594 * 119.99689 * 359.97438 * 11 10 8 13 13 N 1.34770 * 119.99939 * 179.97438 * 11 10 8 14 14 C 1.47427 * 125.65164 * 359.95711 * 13 11 10 15 15 C 1.55128 * 104.94345 * 204.03898 * 14 13 11 16 16 C 1.55164 * 101.48363 * 323.22200 * 15 14 13 17 17 O 1.42899 * 110.71644 * 276.82862 * 16 15 14 18 18 C 1.50695 * 110.72019 * 153.73671 * 16 15 14 19 19 H 1.08001 * 119.99809 * 357.81180 * 18 16 15 20 20 C 1.37881 * 120.00247 * 177.81990 * 18 16 15 21 21 N 1.31507 * 119.99592 * 8.21936 * 20 18 16 22 22 Si 1.86801 * 119.99892 * 188.50280 * 20 18 16 23 23 H 1.48501 * 109.46945 * 179.72195 * 22 20 18 24 24 H 1.48498 * 109.46856 * 299.71839 * 22 20 18 25 25 H 1.48502 * 109.47130 * 59.72165 * 22 20 18 26 26 C 1.47028 * 125.64752 * 179.97438 * 13 11 10 27 27 C 1.53177 * 109.10590 * 57.02244 * 8 7 5 28 28 C 1.53281 * 109.06538 * 303.05490 * 27 8 7 29 29 O 1.42894 * 109.49062 * 65.05078 * 5 4 2 30 30 H 1.09000 * 109.46846 * 60.00104 * 1 2 3 31 31 H 1.08996 * 109.47032 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46762 * 299.99730 * 1 2 3 33 33 H 1.09005 * 109.47096 * 240.00231 * 2 1 3 34 34 H 1.09001 * 109.47117 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47612 * 300.00000 * 3 2 1 36 36 H 1.09000 * 109.47451 * 60.00285 * 3 2 1 37 37 H 1.08994 * 109.46650 * 304.99785 * 4 2 1 38 38 H 1.08998 * 109.46732 * 185.00192 * 4 2 1 39 39 H 1.08994 * 109.52867 * 62.49214 * 7 5 4 40 40 H 1.09004 * 109.57473 * 302.32903 * 7 5 4 41 41 H 0.97000 * 119.99781 * 24.82203 * 10 8 7 42 42 H 1.09003 * 110.36145 * 323.00019 * 14 13 11 43 43 H 1.08998 * 110.36575 * 85.21633 * 14 13 11 44 44 H 1.08993 * 111.15858 * 205.13229 * 15 14 13 45 45 H 1.09003 * 110.93255 * 81.21082 * 15 14 13 46 46 H 0.96698 * 113.99697 * 171.10799 * 17 16 15 47 47 H 0.97006 * 120.00639 * 4.20547 * 21 20 18 48 48 H 1.09004 * 109.88158 * 59.48493 * 26 13 11 49 49 H 1.09004 * 110.01170 * 298.39488 * 26 13 11 50 50 H 1.08998 * 109.52545 * 62.88757 * 27 8 7 51 51 H 1.09005 * 109.51804 * 183.06881 * 27 8 7 52 52 H 1.08999 * 109.46116 * 297.56464 * 28 27 8 53 53 H 1.09000 * 109.46753 * 177.56145 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5564 -2.2709 1.0522 7 6 2.0355 -2.8895 2.4924 8 6 1.6815 -4.3770 2.3998 9 1 2.0133 -4.8877 3.3038 10 7 0.2314 -4.5276 2.2560 11 6 -0.3696 -5.6690 2.6462 12 8 0.2919 -6.5740 3.1173 13 7 -1.7036 -5.8073 2.5143 14 6 -2.6222 -4.7946 1.9628 15 6 -4.0065 -5.1347 2.5746 16 6 -3.9649 -6.6857 2.5898 17 8 -4.3367 -7.2139 1.3151 18 6 -4.8590 -7.2325 3.6727 19 1 -5.3887 -6.5568 4.3279 20 6 -5.0008 -8.5952 3.8270 21 7 -4.2371 -9.4175 3.1414 22 14 -6.2830 -9.2735 5.0040 23 1 -6.2387 -10.7577 4.9825 24 1 -5.9980 -8.7897 6.3788 25 1 -7.6314 -8.8124 4.5865 26 6 -2.4842 -6.9931 2.8970 27 6 2.3832 -4.9844 1.1812 28 6 1.9694 -4.2077 -0.0737 29 8 2.2987 -2.8268 0.0910 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6055 -0.2618 2.1369 38 1 3.1264 -0.6443 1.2951 39 1 1.4967 -2.4381 3.3254 40 1 3.1085 -2.7796 2.6503 41 1 -0.2962 -3.8057 1.8799 42 1 -2.3089 -3.7947 2.2633 43 1 -2.6604 -4.8689 0.8761 44 1 -4.8162 -4.7718 1.9417 45 1 -4.0941 -4.7363 3.5854 46 1 -4.1974 -8.1669 1.2285 47 1 -3.5335 -9.0663 2.5734 48 1 -2.3599 -7.1910 3.9617 49 1 -2.1572 -7.8574 2.3188 50 1 3.4633 -4.9168 1.3115 51 1 2.0928 -6.0299 1.0774 52 1 0.8949 -4.3094 -0.2258 53 1 2.4984 -4.6069 -0.9390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592005803.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -162.883314 kcal Electronic energy + Delta-G solvation = -31798.655671 eV Core-core repulsion = 27668.630262 eV Total energy + Delta-G solvation = -4130.025409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79607 -40.62517 -39.33553 -37.18745 -36.43780 -36.05903 -34.28629 -32.89478 -32.56692 -31.43315 -29.48040 -28.15108 -27.95241 -26.93248 -25.26479 -24.36719 -23.46750 -21.97664 -21.48009 -20.78885 -20.42148 -20.07895 -19.08391 -17.59029 -17.31515 -17.15389 -16.99314 -16.58075 -16.18580 -15.88998 -15.79306 -15.68033 -15.39840 -15.01355 -14.93140 -14.81352 -14.44182 -14.11320 -13.94816 -13.88735 -13.63433 -13.35542 -13.08116 -12.97904 -12.94438 -12.82322 -12.71081 -12.61734 -12.38629 -12.35900 -12.33399 -12.22751 -11.94780 -11.79037 -11.55865 -11.43962 -11.42666 -11.33515 -11.04762 -10.68467 -10.51486 -10.25609 -10.23379 -9.58657 -8.67613 -6.51472 1.48261 1.54849 1.60584 1.80219 2.01042 2.52437 2.78780 2.90180 2.96229 3.53690 3.57918 3.68964 3.80515 3.83427 3.90071 3.94222 4.06933 4.11806 4.19066 4.19516 4.25798 4.32146 4.38271 4.43842 4.59424 4.62161 4.72545 4.77459 4.78326 4.81684 4.85793 4.87489 4.90088 4.96488 5.00318 5.02780 5.07868 5.09184 5.10066 5.15228 5.20143 5.29279 5.39750 5.45880 5.50788 5.59179 5.79199 5.96932 6.06593 6.26213 6.44073 6.87865 6.91722 7.28113 7.43451 8.62401 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002635 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.861539 B =10622.224324 C =11374.395178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.102 4.102 5 C 0.086 3.914 6 H 0.059 0.941 7 C -0.147 4.147 8 C 0.158 3.842 9 H 0.071 0.929 10 N -0.722 5.722 11 C 0.713 3.287 12 O -0.639 6.639 13 N -0.632 5.632 14 C 0.107 3.893 15 C -0.102 4.102 16 C 0.215 3.785 17 O -0.583 6.583 18 C -0.627 4.627 19 H 0.061 0.939 20 C -0.016 4.016 21 N -0.927 5.927 22 Si 1.114 2.886 23 H -0.286 1.286 24 H -0.272 1.272 25 H -0.268 1.268 26 C 0.124 3.876 27 C -0.163 4.163 28 C 0.069 3.931 29 O -0.381 6.381 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.404 0.596 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.366 0.634 47 H 0.260 0.740 48 H 0.034 0.966 49 H 0.024 0.976 50 H 0.093 0.907 51 H 0.052 0.948 52 H 0.041 0.959 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.075 21.533 -5.476 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.139 4.139 5 C 0.028 3.972 6 H 0.077 0.923 7 C -0.185 4.185 8 C 0.053 3.947 9 H 0.089 0.911 10 N -0.379 5.379 11 C 0.415 3.585 12 O -0.521 6.521 13 N -0.369 5.369 14 C -0.015 4.015 15 C -0.140 4.140 16 C 0.174 3.826 17 O -0.390 6.390 18 C -0.665 4.665 19 H 0.080 0.920 20 C -0.216 4.216 21 N -0.567 5.567 22 Si 0.936 3.064 23 H -0.211 1.211 24 H -0.197 1.197 25 H -0.193 1.193 26 C -0.001 4.001 27 C -0.202 4.202 28 C -0.008 4.008 29 O -0.300 6.300 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.241 0.759 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.214 0.786 47 H 0.073 0.927 48 H 0.053 0.947 49 H 0.043 0.957 50 H 0.112 0.888 51 H 0.071 0.929 52 H 0.060 0.940 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.970 20.266 -4.821 24.025 hybrid contribution 0.494 0.038 -0.447 0.668 sum 12.464 20.304 -5.268 24.400 Atomic orbital electron populations 1.21918 0.95232 1.01521 1.02136 1.21047 0.95816 0.96334 0.98192 1.21818 1.00994 0.95385 1.02029 1.21677 1.02169 0.91032 0.99022 1.22284 0.96054 0.93484 0.85359 0.92327 1.22488 1.04386 0.92177 0.99424 1.20928 0.77910 0.97462 0.98419 0.91077 1.45107 1.08716 1.16009 1.68101 1.15725 0.80453 0.83444 0.78890 1.90863 1.64266 1.42890 1.54063 1.47781 1.04607 1.18926 1.65610 1.22448 0.88923 0.91745 0.98350 1.22678 0.96484 0.93108 1.01721 1.19988 0.87524 0.92954 0.82097 1.86246 1.88946 1.27253 1.36589 1.22669 1.30738 0.94933 1.18150 0.92026 1.27280 1.00595 0.94448 0.99259 1.71050 1.18809 1.38378 1.28442 0.82961 0.73815 0.75499 0.74130 1.21148 1.19714 1.19348 1.22702 0.93558 0.86193 0.97598 1.22562 1.01892 0.99637 0.96102 1.22487 0.99585 0.81373 0.97322 1.87926 1.69163 1.22780 1.50137 0.92732 0.93179 0.91957 0.91933 0.92621 0.92704 0.92138 0.89058 0.90820 0.88913 0.88087 0.75874 0.87932 0.90998 0.88943 0.89772 0.78576 0.92733 0.94706 0.95719 0.88816 0.92908 0.94044 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.95 71.98 0.64 -1.22 16 2 C -0.10 -1.21 2.87 -10.79 -0.03 -1.24 16 3 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16 4 C -0.10 -1.22 4.39 30.60 0.13 -1.08 16 5 C 0.09 1.30 2.33 30.62 0.07 1.37 16 6 H 0.06 0.89 4.92 -2.39 -0.01 0.88 16 7 C -0.15 -2.29 5.07 30.69 0.16 -2.13 16 8 C 0.16 3.68 2.81 45.11 0.13 3.81 16 9 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 10 N -0.72 -19.40 4.36 -457.24 -1.99 -21.40 16 11 C 0.71 27.64 8.46 179.06 1.51 29.15 16 12 O -0.64 -30.67 16.34 -4.01 -0.07 -30.74 16 13 N -0.63 -25.11 3.33 -829.29 -2.76 -27.87 16 14 C 0.11 3.33 6.57 86.93 0.57 3.91 16 15 C -0.10 -3.79 6.25 32.07 0.20 -3.59 16 16 C 0.21 10.30 0.82 -10.35 -0.01 10.29 16 17 O -0.58 -29.09 13.04 -148.98 -1.94 -31.03 16 18 C -0.63 -33.37 8.09 25.60 0.21 -33.16 16 19 H 0.06 3.19 7.76 -2.91 -0.02 3.17 16 20 C -0.02 -0.87 5.29 84.66 0.45 -0.42 16 21 N -0.93 -53.64 12.88 21.45 0.28 -53.36 16 22 Si 1.11 48.32 29.91 68.60 2.05 50.37 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 26 C 0.12 6.10 5.21 86.73 0.45 6.55 16 27 C -0.16 -3.70 5.82 30.75 0.18 -3.52 16 28 C 0.07 1.39 6.68 72.08 0.48 1.87 16 29 O -0.38 -7.25 9.86 -148.98 -1.47 -8.72 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 6.46 -2.39 -0.02 0.66 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 1.00 7.70 -2.38 -0.02 0.98 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.40 8.69 5.55 -92.71 -0.51 8.18 16 42 H 0.10 2.29 7.30 -2.39 -0.02 2.27 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.08 3.01 8.01 -2.39 -0.02 2.99 16 46 H 0.37 18.93 6.51 -74.06 -0.48 18.45 16 47 H 0.26 15.01 4.04 -92.70 -0.37 14.63 16 48 H 0.03 1.91 7.81 -2.39 -0.02 1.90 16 49 H 0.02 1.32 6.76 -2.38 -0.02 1.31 16 50 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 52 H 0.04 0.90 7.75 -2.39 -0.02 0.88 16 53 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -69.68 401.98 0.21 -69.47 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: 0.30 Total: 43.56 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 5.81 Total: 9.71 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.48 Total: -102.63 kcal Atomic # 8 Polarization: -67.00 SS G_CDS: -3.48 Total: -70.48 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal Total: -69.68 0.21 -69.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592005803.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.411 kcal (2) G-P(sol) polarization free energy of solvation -69.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds