Wall clock time and date at job start Sat Apr 11 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52995 * 109.46781 * 2 1 4 4 C 1.52992 * 109.47263 * 120.00449 * 2 1 3 5 5 C 1.52994 * 109.47259 * 175.00068 * 4 2 1 6 6 H 1.09002 * 109.48261 * 54.97229 * 5 4 2 7 7 O 1.42899 * 109.48926 * 294.94636 * 5 4 2 8 8 C 1.42908 * 114.10158 * 178.85417 * 7 5 4 9 9 C 1.53089 * 109.41558 * 61.15426 * 8 7 5 10 10 C 1.53313 * 109.19860 * 302.39964 * 9 8 7 11 11 C 1.53090 * 109.48206 * 174.99927 * 5 4 2 12 12 H 1.08996 * 109.52487 * 297.56764 * 11 5 4 13 13 N 1.46503 * 109.52396 * 57.69662 * 11 5 4 14 14 C 1.34776 * 119.99744 * 204.87294 * 13 11 5 15 15 O 1.21583 * 120.00476 * 0.02562 * 14 13 11 16 16 N 1.34781 * 119.99493 * 179.97438 * 14 13 11 17 17 C 1.47426 * 125.65176 * 0.04799 * 16 14 13 18 18 C 1.55381 * 104.87515 * 204.09328 * 17 16 14 19 19 C 1.55156 * 101.36852 * 323.01750 * 18 17 16 20 20 O 1.42898 * 110.71906 * 277.04587 * 19 18 17 21 21 C 1.50697 * 110.72639 * 153.94746 * 19 18 17 22 22 H 1.08001 * 119.99708 * 2.60896 * 21 19 18 23 23 C 1.37878 * 120.00337 * 182.61487 * 21 19 18 24 24 N 1.31513 * 120.00051 * 5.54828 * 23 21 19 25 25 Si 1.86796 * 120.00033 * 185.55303 * 23 21 19 26 26 H 1.48510 * 109.47093 * 84.97972 * 25 23 21 27 27 H 1.48495 * 109.47117 * 204.98169 * 25 23 21 28 28 H 1.48495 * 109.47294 * 324.98481 * 25 23 21 29 29 C 1.47026 * 125.64387 * 180.02562 * 16 14 13 30 30 H 1.08996 * 109.46833 * 299.99525 * 1 2 3 31 31 H 1.08999 * 109.47112 * 59.99682 * 1 2 3 32 32 H 1.08997 * 109.46785 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46833 * 240.00475 * 2 1 3 34 34 H 1.08996 * 109.47049 * 60.00607 * 3 2 1 35 35 H 1.09003 * 109.46942 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47557 * 300.00045 * 3 2 1 37 37 H 1.08998 * 109.47542 * 54.99553 * 4 2 1 38 38 H 1.09004 * 109.46945 * 294.99797 * 4 2 1 39 39 H 1.08995 * 109.48371 * 181.14275 * 8 7 5 40 40 H 1.09001 * 109.47395 * 301.17621 * 8 7 5 41 41 H 1.09008 * 109.51633 * 62.29956 * 9 8 7 42 42 H 1.08993 * 109.52268 * 182.48863 * 9 8 7 43 43 H 1.09006 * 109.52432 * 297.12333 * 10 9 8 44 44 H 1.08996 * 109.62742 * 176.81626 * 10 9 8 45 45 H 0.96997 * 120.00152 * 24.87475 * 13 11 5 46 46 H 1.08997 * 110.36288 * 322.93036 * 17 16 14 47 47 H 1.08998 * 110.36614 * 85.13615 * 17 16 14 48 48 H 1.08996 * 111.18905 * 204.97524 * 18 17 16 49 49 H 1.08998 * 111.02312 * 80.97667 * 18 17 16 50 50 H 0.96702 * 114.00269 * 170.94410 * 20 19 18 51 51 H 0.96996 * 120.00252 * 180.02562 * 24 23 21 52 52 H 1.08994 * 109.88286 * 59.56423 * 29 16 14 53 53 H 1.08998 * 110.01209 * 298.46235 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1878 6 1 3.9956 0.1610 1.0522 7 8 3.9390 -1.6670 0.0909 8 6 5.3506 -1.8168 -0.0738 9 6 5.9433 -2.4651 1.1801 10 6 5.6063 -1.6017 2.4014 11 6 4.0858 -1.4398 2.4923 12 1 3.8388 -0.7819 3.3255 13 7 3.4657 -2.7504 2.7029 14 6 3.3545 -3.2507 3.9494 15 8 3.7683 -2.6143 4.8992 16 7 2.7836 -4.4562 4.1431 17 6 2.2418 -5.3301 3.0867 18 6 1.1941 -6.2237 3.8066 19 6 1.8826 -6.4586 5.1770 20 8 2.8267 -7.5279 5.0919 21 6 0.8589 -6.7377 6.2472 22 1 -0.1887 -6.7936 5.9909 23 6 1.2598 -6.9216 7.5536 24 7 2.5202 -6.7461 7.8855 25 14 0.0128 -7.4202 8.8518 26 1 -0.1481 -8.8966 8.8426 27 1 0.4881 -6.9824 10.1888 28 1 -1.2932 -6.7783 8.5561 29 6 2.5985 -5.1175 5.4431 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6055 -1.7198 1.2951 38 1 1.7518 -0.1584 2.1369 39 1 5.5507 -2.4488 -0.9390 40 1 5.8046 -0.8376 -0.2259 41 1 5.5194 -3.4609 1.3102 42 1 7.0255 -2.5398 1.0746 43 1 6.0716 -0.6218 2.2943 44 1 5.9763 -2.0857 3.3052 45 1 3.1353 -3.2580 1.9453 46 1 1.7620 -4.7341 2.3104 47 1 3.0345 -5.9430 2.6578 48 1 1.0481 -7.1647 3.2763 49 1 0.2486 -5.6957 3.9299 50 1 3.3820 -7.6258 5.8774 51 1 2.8023 -6.8758 8.8045 52 1 1.9859 -4.4927 6.0930 53 1 3.5664 -5.3005 5.9098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010878.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:22 Heat of formation + Delta-G solvation = -163.163980 kcal Electronic energy + Delta-G solvation = -32104.027329 eV Core-core repulsion = 27973.989749 eV Total energy + Delta-G solvation = -4130.037580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68958 -40.45805 -38.97056 -37.09250 -36.06132 -35.79965 -34.23686 -33.57317 -32.15374 -31.05845 -29.50895 -28.09764 -27.96184 -26.91041 -25.22736 -24.25744 -23.43762 -21.69558 -21.32498 -20.75547 -20.41356 -19.28876 -18.91390 -17.66352 -17.21994 -17.01684 -16.79166 -16.50923 -16.27426 -16.05912 -15.71693 -15.43685 -15.12542 -14.84273 -14.73538 -14.70389 -14.47536 -14.06549 -13.80659 -13.70389 -13.50502 -13.29652 -13.21286 -13.03653 -12.99037 -12.83783 -12.70352 -12.52946 -12.36285 -12.28066 -12.22682 -12.14835 -12.09226 -11.58380 -11.53664 -11.45106 -11.30410 -11.18019 -11.06909 -10.66589 -10.53801 -10.28539 -10.06213 -9.38350 -8.25704 -6.41033 1.41565 1.42736 1.52104 1.66812 2.16299 2.38171 2.79823 3.00345 3.11218 3.50021 3.77027 3.79043 3.92226 3.99518 4.04588 4.06619 4.13764 4.16756 4.18929 4.32617 4.37432 4.47066 4.54366 4.58245 4.63945 4.71262 4.72416 4.78749 4.85871 4.89057 4.91981 5.01405 5.05649 5.06041 5.11035 5.13209 5.14884 5.21521 5.21791 5.26575 5.35255 5.36921 5.49628 5.50256 5.57625 5.60228 5.74320 6.04833 6.19171 6.28835 6.65052 7.07640 7.26735 7.33656 7.59392 8.80296 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.002961 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.034669 B = 9453.536314 C =10193.067218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.105 4.105 5 C 0.097 3.903 6 H 0.094 0.906 7 O -0.382 6.382 8 C 0.062 3.938 9 C -0.150 4.150 10 C -0.134 4.134 11 C 0.131 3.869 12 H 0.073 0.927 13 N -0.714 5.714 14 C 0.712 3.288 15 O -0.643 6.643 16 N -0.636 5.636 17 C 0.110 3.890 18 C -0.109 4.109 19 C 0.234 3.766 20 O -0.585 6.585 21 C -0.558 4.558 22 H 0.067 0.933 23 C 0.026 3.974 24 N -0.915 5.915 25 Si 0.963 3.037 26 H -0.272 1.272 27 H -0.286 1.286 28 H -0.268 1.268 29 C 0.145 3.855 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.039 0.961 45 H 0.406 0.594 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.373 0.627 51 H 0.269 0.731 52 H 0.028 0.972 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 13.470 -20.169 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.143 4.143 5 C 0.039 3.961 6 H 0.111 0.889 7 O -0.301 6.301 8 C -0.014 4.014 9 C -0.187 4.187 10 C -0.173 4.173 11 C 0.026 3.974 12 H 0.091 0.909 13 N -0.370 5.370 14 C 0.414 3.586 15 O -0.526 6.526 16 N -0.372 5.372 17 C -0.012 4.012 18 C -0.147 4.147 19 C 0.194 3.806 20 O -0.392 6.392 21 C -0.596 4.596 22 H 0.085 0.915 23 C -0.175 4.175 24 N -0.554 5.554 25 Si 0.789 3.211 26 H -0.197 1.197 27 H -0.212 1.212 28 H -0.192 1.192 29 C 0.021 3.979 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.243 0.757 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.101 0.899 50 H 0.221 0.779 51 H 0.078 0.922 52 H 0.046 0.954 53 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.342 13.845 -20.079 24.502 hybrid contribution 0.072 -0.545 2.090 2.161 sum 2.414 13.300 -17.989 22.502 Atomic orbital electron populations 1.21844 0.95140 1.01653 1.01892 1.21013 0.95622 0.96422 0.97626 1.21897 1.01201 0.95420 1.01998 1.21642 0.92355 1.01306 0.98983 1.22403 0.96146 0.93882 0.83701 0.88874 1.87928 1.23628 1.69668 1.48839 1.22721 0.80452 1.01048 0.97156 1.22140 1.02167 0.99270 0.95168 1.22013 0.95173 1.01611 0.98477 1.21582 0.92999 0.83780 0.99078 0.90874 1.44864 1.65162 1.21480 1.05536 1.15735 0.78578 0.80236 0.84063 1.90836 1.57715 1.61396 1.42670 1.47889 1.61959 1.17314 1.10087 1.22412 0.96413 0.92351 0.90041 1.22787 0.97367 0.99773 0.94741 1.19705 0.85985 0.81629 0.93307 1.86113 1.53442 1.54940 1.44731 1.21820 0.94269 1.50291 0.93197 0.91515 1.25817 0.97349 0.93737 1.00632 1.69858 1.16992 1.48581 1.19928 0.85488 0.79215 0.78739 0.77703 1.19706 1.21207 1.19222 1.22320 0.98043 0.95017 0.82521 0.93089 0.91855 0.93102 0.90614 0.92873 0.92252 0.92035 0.92031 0.91088 0.87228 0.91339 0.92873 0.89557 0.88905 0.94199 0.75714 0.88659 0.91366 0.89112 0.89903 0.77851 0.92202 0.95391 0.95548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.19 71.99 0.66 -1.54 16 2 C -0.09 -1.33 2.87 -10.79 -0.03 -1.37 16 3 C -0.15 -1.87 8.95 71.98 0.64 -1.23 16 4 C -0.11 -1.94 4.12 30.59 0.13 -1.82 16 5 C 0.10 1.74 2.20 30.62 0.07 1.81 16 6 H 0.09 1.36 6.34 -2.39 -0.02 1.34 16 7 O -0.38 -6.76 9.48 -148.98 -1.41 -8.17 16 8 C 0.06 0.87 6.84 72.01 0.49 1.37 16 9 C -0.15 -2.74 5.97 30.73 0.18 -2.56 16 10 C -0.13 -3.06 5.71 30.76 0.18 -2.89 16 11 C 0.13 3.26 2.29 45.08 0.10 3.36 16 12 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 13 N -0.71 -21.06 3.76 -457.38 -1.72 -22.78 16 14 C 0.71 29.22 8.46 179.05 1.51 30.73 16 15 O -0.64 -32.19 16.33 -3.98 -0.06 -32.25 16 16 N -0.64 -26.73 3.33 -828.79 -2.76 -29.49 16 17 C 0.11 3.70 6.58 87.02 0.57 4.27 16 18 C -0.11 -4.19 6.26 32.15 0.20 -3.99 16 19 C 0.23 11.49 0.84 -10.35 -0.01 11.48 16 20 O -0.58 -29.80 13.07 -148.98 -1.95 -31.75 16 21 C -0.56 -29.70 8.11 25.60 0.21 -29.49 16 22 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 23 C 0.03 1.37 5.29 84.66 0.45 1.82 16 24 N -0.91 -50.83 11.03 21.45 0.24 -50.59 16 25 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 C 0.15 7.41 5.24 86.73 0.45 7.87 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.21 7.70 -2.39 -0.02 1.19 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.69 6.46 -2.39 -0.02 0.68 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.06 1.28 7.47 -2.39 -0.02 1.27 16 38 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 1.19 7.76 -2.38 -0.02 1.18 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.41 10.47 6.43 -92.71 -0.60 9.87 16 46 H 0.10 2.47 7.30 -2.39 -0.02 2.45 16 47 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 49 H 0.08 3.07 8.04 -2.39 -0.02 3.05 16 50 H 0.37 19.83 7.50 -74.06 -0.56 19.27 16 51 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 52 H 0.03 1.59 7.81 -2.39 -0.02 1.57 16 53 H 0.03 1.50 7.84 -2.39 -0.02 1.48 16 Total: -1.00 -67.21 406.93 -0.08 -67.29 By element: Atomic # 1 Polarization: 45.43 SS G_CDS: -0.25 Total: 45.17 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 5.81 Total: 17.83 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -4.24 Total: -102.86 kcal Atomic # 8 Polarization: -68.75 SS G_CDS: -3.42 Total: -72.17 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -67.21 -0.08 -67.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010878.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.875 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds