Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47044 * 2 1 4 4 C 1.52997 * 109.47183 * 119.99981 * 2 1 3 5 5 C 1.52998 * 109.47270 * 174.15567 * 4 2 1 6 6 H 1.09001 * 109.47791 * 56.65533 * 5 4 2 7 7 O 1.42899 * 109.49099 * 296.63113 * 5 4 2 8 8 C 1.42899 * 114.09800 * 178.85308 * 7 5 4 9 9 C 1.53096 * 109.41770 * 61.15608 * 8 7 5 10 10 C 1.53178 * 109.16194 * 302.39031 * 9 8 7 11 11 C 1.53085 * 109.48222 * 176.67670 * 5 4 2 12 12 H 1.09008 * 109.52081 * 57.69753 * 11 5 4 13 13 N 1.46500 * 109.52843 * 297.51186 * 11 5 4 14 14 C 1.34776 * 120.00417 * 154.99526 * 13 11 5 15 15 O 1.21587 * 119.99895 * 0.02562 * 14 13 11 16 16 N 1.34776 * 119.99961 * 180.02562 * 14 13 11 17 17 C 1.47429 * 125.64890 * 359.69170 * 16 14 13 18 18 C 1.55133 * 104.72136 * 155.81675 * 17 16 14 19 19 C 1.55160 * 101.48231 * 37.30120 * 18 17 16 20 20 O 1.42898 * 110.87755 * 82.76535 * 19 18 17 21 21 C 1.50707 * 110.71619 * 205.96713 * 19 18 17 22 22 H 1.08007 * 119.99839 * 354.97842 * 21 19 18 23 23 C 1.37879 * 119.99893 * 174.97164 * 21 19 18 24 24 N 1.31509 * 119.99951 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99786 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47453 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47316 * 120.00419 * 25 23 21 28 28 H 1.48503 * 109.47048 * 239.99989 * 25 23 21 29 29 C 1.47024 * 125.64739 * 180.02562 * 16 14 13 30 30 H 1.08997 * 109.46727 * 296.72458 * 1 2 3 31 31 H 1.09002 * 109.46977 * 56.71741 * 1 2 3 32 32 H 1.09000 * 109.46923 * 176.72029 * 1 2 3 33 33 H 1.09001 * 109.46858 * 240.00080 * 2 1 3 34 34 H 1.08998 * 109.46788 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46753 * 300.00061 * 3 2 1 36 36 H 1.08996 * 109.47296 * 59.99824 * 3 2 1 37 37 H 1.08998 * 109.47528 * 54.15008 * 4 2 1 38 38 H 1.09007 * 109.46830 * 294.15668 * 4 2 1 39 39 H 1.09000 * 109.48293 * 301.16752 * 8 7 5 40 40 H 1.09004 * 109.48824 * 181.14456 * 8 7 5 41 41 H 1.08994 * 109.52143 * 182.48441 * 9 8 7 42 42 H 1.09002 * 109.57112 * 62.32501 * 9 8 7 43 43 H 1.08994 * 109.54326 * 297.11469 * 10 9 8 44 44 H 1.08999 * 109.61401 * 176.88784 * 10 9 8 45 45 H 0.97008 * 119.99441 * 335.00066 * 13 11 5 46 46 H 1.09001 * 110.36683 * 274.74976 * 17 16 14 47 47 H 1.08996 * 110.36845 * 37.07291 * 17 16 14 48 48 H 1.08994 * 111.19334 * 279.19090 * 18 17 16 49 49 H 1.09000 * 110.93325 * 155.28880 * 18 17 16 50 50 H 0.96697 * 113.99877 * 184.93534 * 20 19 18 51 51 H 0.97000 * 119.99972 * 179.97438 * 24 23 21 52 52 H 1.09003 * 109.87837 * 300.43553 * 29 16 14 53 53 H 1.08997 * 109.88296 * 61.60538 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5630 -0.8497 1.1780 6 1 4.0063 0.1396 1.0643 7 8 3.9210 -1.6636 0.0593 8 6 5.3297 -1.8279 -0.1156 9 6 5.9193 -2.5143 1.1193 10 6 5.5992 -1.6766 2.3611 11 6 4.0816 -1.4967 2.4648 12 1 3.6079 -2.4691 2.6001 13 7 3.7677 -0.6348 3.6072 14 6 3.6525 -1.1659 4.8405 15 8 3.8095 -2.3603 5.0052 16 7 3.3633 -0.3730 5.8913 17 6 3.1550 1.0854 5.8355 18 6 2.2763 1.4057 7.0732 19 6 2.8574 0.4258 8.1265 20 8 4.0286 0.9707 8.7375 21 6 1.8226 0.0883 9.1689 22 1 0.8616 0.5812 9.1551 23 6 2.1025 -0.8496 10.1399 24 7 3.2728 -1.4494 10.1568 25 14 0.8195 -1.2684 11.4314 26 1 -0.4041 -0.4613 11.1936 27 1 0.4839 -2.7124 11.3457 28 1 1.3587 -0.9649 12.7814 29 6 3.2100 -0.8182 7.2841 30 1 -0.3633 0.4621 0.9179 31 1 -0.3633 0.5640 -0.8591 32 1 -0.3633 -1.0260 -0.0588 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.5938 -1.7142 1.3032 38 1 1.7646 -0.1505 2.1361 39 1 5.7961 -0.8515 -0.2463 40 1 5.5176 -2.4413 -0.9969 41 1 7.0000 -2.6008 1.0068 42 1 5.4837 -3.5076 1.2278 43 1 6.0770 -0.7007 2.2756 44 1 5.9677 -2.1863 3.2513 45 1 3.6427 0.3182 3.4758 46 1 4.1096 1.6077 5.8996 47 1 2.6326 1.3593 4.9190 48 1 1.2259 1.1908 6.8771 49 1 2.4090 2.4409 7.3876 50 1 4.4717 0.3656 9.3479 51 1 3.4699 -2.1090 10.8402 52 1 2.4068 -1.5519 7.3524 53 1 4.1440 -1.2538 7.6389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010880.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -164.702888 kcal Electronic energy + Delta-G solvation = -31852.103574 eV Core-core repulsion = 27721.999262 eV Total energy + Delta-G solvation = -4130.104312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63094 -40.50358 -39.03551 -37.11477 -36.07538 -36.05680 -34.23213 -33.72196 -32.10836 -30.99320 -29.51755 -28.11079 -27.93957 -26.93878 -25.24395 -24.14037 -23.29357 -21.56896 -21.39388 -21.02357 -20.75844 -19.28467 -18.90375 -17.78196 -17.27350 -17.11638 -16.73571 -16.53294 -16.24351 -16.05739 -15.49688 -15.43799 -15.29798 -14.83233 -14.76843 -14.74155 -14.32991 -14.20486 -13.95561 -13.80452 -13.51121 -13.31304 -13.23765 -13.09754 -12.87928 -12.79883 -12.57882 -12.44389 -12.36421 -12.29017 -12.25257 -12.16531 -12.07771 -11.79101 -11.55950 -11.48136 -11.35345 -11.17116 -11.12259 -10.66522 -10.57018 -10.29178 -10.11372 -9.41184 -8.26684 -6.42328 1.39137 1.42826 1.53290 1.58584 2.12617 2.37348 2.75785 3.00371 3.08826 3.44111 3.75804 3.79903 3.89304 3.98051 4.02053 4.06835 4.12683 4.15693 4.18193 4.19845 4.38659 4.44730 4.51804 4.59037 4.64247 4.72160 4.77195 4.78643 4.84898 4.85540 4.90512 5.00218 5.04867 5.05487 5.12107 5.13370 5.14481 5.15419 5.21954 5.25860 5.35939 5.36479 5.46831 5.50029 5.51252 5.59317 5.74682 6.02679 6.15845 6.24834 6.64885 7.04521 7.27251 7.34767 7.55687 8.79502 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.002892 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.486309 B = 9679.730838 C =10515.003196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.107 4.107 5 C 0.099 3.901 6 H 0.087 0.913 7 O -0.382 6.382 8 C 0.057 3.943 9 C -0.148 4.148 10 C -0.133 4.133 11 C 0.137 3.863 12 H 0.059 0.941 13 N -0.718 5.718 14 C 0.713 3.287 15 O -0.643 6.643 16 N -0.634 5.634 17 C 0.107 3.893 18 C -0.110 4.110 19 C 0.233 3.767 20 O -0.586 6.586 21 C -0.556 4.556 22 H 0.068 0.932 23 C 0.025 3.975 24 N -0.916 5.916 25 Si 0.962 3.038 26 H -0.263 1.263 27 H -0.285 1.285 28 H -0.277 1.277 29 C 0.144 3.856 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.040 0.960 45 H 0.409 0.591 46 H 0.072 0.928 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.375 0.625 51 H 0.269 0.731 52 H 0.027 0.973 53 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 6.593 -23.152 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.145 4.145 5 C 0.041 3.959 6 H 0.105 0.895 7 O -0.300 6.300 8 C -0.019 4.019 9 C -0.187 4.187 10 C -0.172 4.172 11 C 0.031 3.969 12 H 0.077 0.923 13 N -0.376 5.376 14 C 0.415 3.585 15 O -0.526 6.526 16 N -0.371 5.371 17 C -0.014 4.014 18 C -0.147 4.147 19 C 0.193 3.807 20 O -0.394 6.394 21 C -0.594 4.594 22 H 0.086 0.914 23 C -0.176 4.176 24 N -0.555 5.555 25 Si 0.788 3.212 26 H -0.187 1.187 27 H -0.212 1.212 28 H -0.203 1.203 29 C 0.020 3.980 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.246 0.754 46 H 0.090 0.910 47 H 0.121 0.879 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.224 0.776 51 H 0.078 0.922 52 H 0.045 0.955 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.209 6.004 -23.515 24.299 hybrid contribution -0.053 -1.116 1.934 2.234 sum 1.157 4.888 -21.581 22.158 Atomic orbital electron populations 1.21846 0.95096 1.01502 1.02088 1.21012 0.95666 0.96642 0.97407 1.21898 1.01187 0.95083 1.02318 1.21701 0.92361 1.01050 0.99352 1.22245 0.96200 0.93893 0.83572 0.89541 1.87965 1.24242 1.71393 1.46392 1.22804 0.80369 1.01025 0.97672 1.22181 1.02819 0.99290 0.94389 1.22012 0.95207 1.01422 0.98562 1.21457 0.95843 0.94330 0.85259 0.92302 1.44795 1.76579 1.11786 1.04397 1.15681 0.77921 0.84041 0.80814 1.90854 1.60806 1.15927 1.84991 1.47888 1.72920 1.09274 1.07021 1.22460 1.00020 0.79127 0.99826 1.22751 0.98883 1.00082 0.93024 1.19717 0.83519 0.87961 0.89536 1.86086 1.43484 1.46380 1.63454 1.21881 1.01343 1.23311 1.12882 0.91421 1.25819 0.97448 0.94834 0.99507 1.69815 1.22864 1.27412 1.35419 0.85438 0.79430 0.77655 0.78708 1.18742 1.21159 1.20292 1.22317 0.97869 0.99085 0.78759 0.92811 0.91728 0.93417 0.90979 0.92276 0.92045 0.92302 0.92890 0.90332 0.91195 0.86803 0.88700 0.92333 0.89988 0.94061 0.75406 0.90989 0.87926 0.89814 0.89064 0.77634 0.92180 0.95469 0.95644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.19 71.98 0.66 -1.58 16 2 C -0.09 -1.38 2.86 -10.79 -0.03 -1.42 16 3 C -0.15 -1.82 8.97 71.98 0.65 -1.18 16 4 C -0.11 -2.06 4.30 30.59 0.13 -1.93 16 5 C 0.10 1.89 2.06 30.62 0.06 1.95 16 6 H 0.09 1.29 6.45 -2.39 -0.02 1.28 16 7 O -0.38 -7.46 9.78 -148.98 -1.46 -8.91 16 8 C 0.06 0.83 6.84 72.01 0.49 1.32 16 9 C -0.15 -2.67 6.14 30.69 0.19 -2.48 16 10 C -0.13 -3.14 5.61 30.71 0.17 -2.97 16 11 C 0.14 3.53 2.07 45.08 0.09 3.62 16 12 H 0.06 1.97 7.58 -2.38 -0.02 1.95 16 13 N -0.72 -20.05 4.35 -457.38 -1.99 -22.04 16 14 C 0.71 28.72 8.46 179.06 1.51 30.23 16 15 O -0.64 -32.39 16.33 -3.99 -0.07 -32.46 16 16 N -0.63 -25.83 3.32 -829.29 -2.76 -28.59 16 17 C 0.11 3.36 6.58 86.93 0.57 3.93 16 18 C -0.11 -4.04 6.24 32.07 0.20 -3.84 16 19 C 0.23 11.22 0.85 -10.35 -0.01 11.21 16 20 O -0.59 -29.44 13.08 -148.98 -1.95 -31.38 16 21 C -0.56 -29.20 8.12 25.60 0.21 -28.99 16 22 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 23 C 0.02 1.31 5.28 84.66 0.45 1.76 16 24 N -0.92 -50.52 10.97 21.45 0.24 -50.29 16 25 Si 0.96 42.45 29.54 68.60 2.03 44.47 16 26 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 29 C 0.14 7.25 5.24 86.73 0.45 7.70 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.07 1.23 7.62 -2.39 -0.02 1.21 16 34 H 0.06 0.67 6.52 -2.39 -0.02 0.66 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.51 7.53 -2.38 -0.02 1.49 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.41 8.61 7.01 -92.70 -0.65 7.96 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.10 2.26 7.29 -2.39 -0.02 2.25 16 48 H 0.08 2.97 8.04 -2.39 -0.02 2.95 16 49 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 50 H 0.37 19.80 7.44 -74.06 -0.55 19.25 16 51 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 52 H 0.03 1.53 7.81 -2.39 -0.02 1.51 16 53 H 0.03 1.43 7.92 -2.39 -0.02 1.41 16 Total: -1.00 -68.85 408.79 -0.46 -69.31 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -0.30 Total: 42.55 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.80 Total: 17.33 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.51 Total: -100.91 kcal Atomic # 8 Polarization: -69.28 SS G_CDS: -3.47 Total: -72.75 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -68.85 -0.46 -69.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010880.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.394 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds