Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 C 1.53000 * 109.47293 * 119.99826 * 2 1 3 5 5 C 1.53001 * 109.46933 * 65.00264 * 4 2 1 6 6 H 1.08995 * 109.47203 * 304.99934 * 5 4 2 7 7 C 1.53000 * 109.47027 * 185.00218 * 5 4 2 8 8 N 1.46503 * 109.47236 * 175.00264 * 7 5 4 9 9 C 1.34773 * 120.00018 * 180.02562 * 8 7 5 10 10 O 1.21588 * 120.00335 * 4.97733 * 9 8 7 11 11 N 1.34782 * 119.99805 * 184.97803 * 9 8 7 12 12 C 1.46920 * 120.62999 * 354.77405 * 11 9 8 13 13 C 1.53195 * 108.89195 * 233.67875 * 12 11 9 14 14 C 1.53034 * 109.30987 * 305.29089 * 13 12 11 15 15 C 1.53004 * 109.45691 * 181.38457 * 14 13 12 16 16 C 1.50709 * 109.46887 * 175.00401 * 15 14 13 17 17 H 1.07992 * 119.99864 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99608 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99961 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47209 * 59.99858 * 20 18 16 22 22 H 1.48504 * 109.47174 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47193 * 299.99922 * 20 18 16 24 24 C 1.53041 * 109.53698 * 61.37073 * 14 13 12 25 25 C 1.47201 * 120.81146 * 174.91534 * 11 9 8 26 26 C 1.50698 * 109.47213 * 64.99826 * 5 4 2 27 27 O 1.20825 * 119.99683 * 119.99450 * 26 5 4 28 28 O 1.34221 * 120.00246 * 300.00421 * 26 5 4 29 29 H 1.09006 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47258 * 299.99690 * 1 2 3 31 31 H 1.08997 * 109.47173 * 60.00254 * 1 2 3 32 32 H 1.09002 * 109.47258 * 240.00310 * 2 1 3 33 33 H 1.08999 * 109.47289 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46930 * 299.99894 * 3 2 1 35 35 H 1.09002 * 109.46842 * 60.00055 * 3 2 1 36 36 H 1.08998 * 109.47472 * 305.00296 * 4 2 1 37 37 H 1.08995 * 109.47243 * 185.00287 * 4 2 1 38 38 H 1.08997 * 109.47038 * 54.99914 * 7 5 4 39 39 H 1.09000 * 109.47193 * 294.99838 * 7 5 4 40 40 H 0.97009 * 119.99546 * 359.97438 * 8 7 5 41 41 H 1.09008 * 109.58722 * 113.82105 * 12 11 9 42 42 H 1.09004 * 109.59155 * 353.53507 * 12 11 9 43 43 H 1.08998 * 109.49738 * 65.25124 * 13 12 11 44 44 H 1.09008 * 109.49517 * 185.31058 * 13 12 11 45 45 H 1.08995 * 109.46804 * 301.35920 * 14 13 12 46 46 H 1.08997 * 109.47461 * 295.00114 * 15 14 13 47 47 H 1.08998 * 109.47537 * 55.00599 * 15 14 13 48 48 H 0.97002 * 119.99697 * 180.02562 * 19 18 16 49 49 H 1.08997 * 109.50104 * 58.58324 * 24 14 13 50 50 H 1.09006 * 109.49750 * 178.68212 * 24 14 13 51 51 H 1.09000 * 109.53945 * 6.53126 * 25 11 9 52 52 H 1.09004 * 109.67937 * 246.22854 * 25 11 9 53 53 H 0.96701 * 117.00324 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5564 -2.2707 1.0527 7 6 2.0354 -2.8888 2.4918 8 7 1.5428 -4.2684 2.4825 9 6 1.7782 -5.0752 3.5360 10 8 2.3195 -4.6335 4.5311 11 7 1.4137 -6.3719 3.4866 12 6 0.6577 -6.8937 2.3399 13 6 -0.6071 -7.5883 2.8543 14 6 -0.2174 -8.6521 3.8831 15 6 -1.4755 -9.3717 4.3737 16 6 -1.0828 -10.4995 5.2929 17 1 -0.0404 -10.6843 5.5062 18 6 -2.0545 -11.2955 5.8616 19 7 -3.3240 -11.0701 5.6022 20 14 -1.5679 -12.6930 7.0015 21 1 -0.8252 -12.1466 8.1656 22 1 -2.7889 -13.3915 7.4776 23 1 -0.7029 -13.6516 6.2681 24 6 0.4834 -7.9849 5.0688 25 6 1.7605 -7.2948 4.5796 26 6 2.3342 -2.8605 0.0303 27 8 3.0764 -3.7933 0.2279 28 8 2.1325 -2.4166 -1.2202 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 1.6009 -2.3535 3.3361 39 1 3.1216 -2.8915 2.5835 40 1 1.0464 -4.6010 1.7182 41 1 1.2713 -7.6099 1.7932 42 1 0.3804 -6.0715 1.6802 43 1 -1.2617 -6.8526 3.3216 44 1 -1.1272 -8.0607 2.0209 45 1 0.4570 -9.3736 3.4220 46 1 -2.1098 -8.6679 4.9126 47 1 -2.0213 -9.7724 3.5196 48 1 -4.0076 -11.6298 6.0025 49 1 -0.1815 -7.2456 5.5154 50 1 0.7397 -8.7402 5.8119 51 1 2.2110 -6.7357 5.3997 52 1 2.4650 -8.0439 4.2179 53 1 2.6030 -2.8748 -1.9300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592211323.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -171.310677 kcal Electronic energy + Delta-G solvation = -30605.717481 eV Core-core repulsion = 26475.326634 eV Total energy + Delta-G solvation = -4130.390847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83405 -41.16608 -38.92496 -37.89837 -37.25899 -35.82507 -35.64216 -34.00421 -32.71206 -31.75830 -29.80238 -27.93915 -27.11811 -26.13190 -25.49694 -24.04007 -23.52794 -21.87206 -21.51162 -20.81476 -20.31003 -19.13791 -19.02468 -18.37836 -17.96313 -17.46157 -16.77283 -16.53968 -16.41845 -15.82914 -15.51745 -15.35554 -15.16075 -14.93112 -14.77558 -14.68391 -14.48028 -14.42170 -14.14833 -13.84072 -13.61005 -13.32570 -13.16390 -13.01360 -13.00137 -12.73882 -12.65589 -12.61916 -12.48517 -12.46648 -12.33489 -12.12094 -11.80928 -11.62974 -11.58305 -11.35278 -11.33229 -11.26384 -11.20006 -11.02626 -10.81426 -10.50460 -10.23519 -9.44545 -8.15925 -6.24657 1.21287 1.41126 1.43347 1.50716 1.63233 2.06082 2.13922 2.43051 2.86894 3.17542 3.38746 3.76031 3.90208 3.98786 3.99971 4.07212 4.13980 4.19905 4.21806 4.40248 4.41973 4.48087 4.51435 4.61231 4.65907 4.74355 4.80326 4.89027 4.90138 4.91421 4.98101 4.99275 5.06061 5.08134 5.15011 5.18544 5.29454 5.33654 5.38205 5.40374 5.45809 5.53577 5.54993 5.60173 5.65544 5.69968 5.82017 5.90694 5.95760 6.31155 6.91143 6.92102 7.02722 7.43492 7.51943 8.95526 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.001999 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.588734 B =14006.612319 C =14227.688291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.086 4.086 6 H 0.136 0.864 7 C 0.152 3.848 8 N -0.731 5.731 9 C 0.705 3.295 10 O -0.635 6.635 11 N -0.626 5.626 12 C 0.121 3.879 13 C -0.122 4.122 14 C -0.073 4.073 15 C 0.034 3.966 16 C -0.529 4.529 17 H 0.062 0.938 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.267 1.267 24 C -0.109 4.109 25 C 0.136 3.864 26 C 0.484 3.516 27 O -0.541 6.541 28 O -0.500 6.500 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.403 0.597 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.062 0.938 46 H -0.016 1.016 47 H -0.007 1.007 48 H 0.261 0.739 49 H 0.040 0.960 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.077 0.923 53 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.352 24.522 -17.186 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.204 4.204 4 C -0.139 4.139 5 C -0.105 4.105 6 H 0.154 0.846 7 C 0.028 3.972 8 N -0.389 5.389 9 C 0.406 3.594 10 O -0.518 6.518 11 N -0.362 5.362 12 C -0.002 4.002 13 C -0.161 4.161 14 C -0.092 4.092 15 C -0.003 4.003 16 C -0.567 4.567 17 H 0.081 0.919 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.783 3.217 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.147 4.147 25 C 0.013 3.987 26 C 0.327 3.673 27 O -0.431 6.431 28 O -0.313 6.313 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.240 0.760 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.003 0.997 47 H 0.011 0.989 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.095 0.905 53 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 10.596 24.744 -16.102 31.366 hybrid contribution -0.171 -1.546 0.075 1.557 sum 10.425 23.198 -16.028 30.062 Atomic orbital electron populations 1.21888 0.94826 1.01884 1.01989 1.21373 0.96390 0.96394 0.98286 1.21823 1.00856 0.95648 1.02091 1.21616 1.01986 0.89554 1.00792 1.21489 1.03277 0.97217 0.88520 0.84617 1.21128 0.99409 0.80155 0.96546 1.45039 1.60977 1.13071 1.19786 1.15938 0.79030 0.81098 0.83289 1.90850 1.51906 1.75357 1.33638 1.47410 1.58449 1.07291 1.23091 1.21725 0.92350 0.99030 0.87065 1.21928 0.97036 0.97827 0.99261 1.21035 0.97284 0.95879 0.95002 1.19007 0.92986 0.93853 0.94459 1.21651 0.93118 1.14341 1.27603 0.91949 1.25930 0.94988 1.00504 0.98550 1.70090 1.00650 1.40924 1.45874 0.85603 0.77524 0.79265 0.79277 1.19484 1.21216 1.19158 1.21754 0.95958 0.98678 0.98339 1.21503 0.96495 0.91364 0.89326 1.23531 0.78664 0.80443 0.84636 1.90806 1.36986 1.29374 1.85910 1.84557 1.68812 1.60668 1.17306 0.92477 0.92567 0.92518 0.88814 0.92858 0.92332 0.92532 0.88658 0.91147 0.89673 0.92603 0.75954 0.90089 0.88784 0.92956 0.89974 0.91910 0.99719 0.98903 0.93035 0.94118 0.91291 0.90512 0.90527 0.71542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.95 71.98 0.64 -0.47 16 2 C -0.11 -0.82 2.71 -10.79 -0.03 -0.85 16 3 C -0.15 -1.08 9.19 71.98 0.66 -0.41 16 4 C -0.10 -0.87 4.14 30.59 0.13 -0.75 16 5 C -0.09 -0.98 2.23 -11.54 -0.03 -1.00 16 6 H 0.14 1.11 6.34 -2.39 -0.02 1.10 16 7 C 0.15 2.86 4.63 86.38 0.40 3.26 16 8 N -0.73 -16.93 4.72 -478.53 -2.26 -19.19 16 9 C 0.70 22.45 8.30 179.05 1.49 23.93 16 10 O -0.64 -25.02 15.79 -3.99 -0.06 -25.08 16 11 N -0.63 -19.03 2.98 -836.18 -2.50 -21.52 16 12 C 0.12 3.00 6.38 86.36 0.55 3.55 16 13 C -0.12 -3.78 5.36 30.67 0.16 -3.62 16 14 C -0.07 -2.87 2.10 -10.77 -0.02 -2.89 16 15 C 0.03 1.75 4.45 29.85 0.13 1.88 16 16 C -0.53 -29.47 8.39 25.60 0.21 -29.25 16 17 H 0.06 3.32 7.05 -2.91 -0.02 3.30 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 20 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.11 -4.14 5.19 30.67 0.16 -3.98 16 25 C 0.14 4.47 6.45 86.31 0.56 5.03 16 26 C 0.48 6.64 7.27 71.24 0.52 7.16 16 27 O -0.54 -11.89 16.05 21.97 0.35 -11.54 16 28 O -0.50 -3.82 10.50 -51.33 -0.54 -4.36 16 29 H 0.06 0.41 6.46 -2.38 -0.02 0.40 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.79 5.18 -2.39 -0.01 0.77 16 33 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.28 7.96 -2.39 -0.02 1.26 16 40 H 0.40 7.59 5.64 -92.70 -0.52 7.06 16 41 H 0.08 1.85 8.14 -2.38 -0.02 1.84 16 42 H 0.09 1.77 5.64 -2.38 -0.01 1.75 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 47 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.07 2.80 6.91 -2.38 -0.02 2.78 16 51 H 0.08 2.69 7.01 -2.39 -0.02 2.67 16 52 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.42 0.45 9.10 -74.06 -0.67 -0.23 16 Total: -1.00 -77.12 411.28 3.02 -74.10 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.29 Total: 15.81 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.00 Total: 1.92 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -4.47 Total: -97.36 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.25 Total: -40.97 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -77.12 3.02 -74.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592211323.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.215 kcal (2) G-P(sol) polarization free energy of solvation -77.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds