Wall clock time and date at job start Sat Apr 11 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99829 * 2 1 4 4 N 1.34773 * 119.99890 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00025 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47101 * 187.00764 * 5 4 2 7 7 H 1.08995 * 109.47570 * 309.50688 * 6 5 4 8 8 C 1.53010 * 109.47167 * 189.50807 * 6 5 4 9 9 C 1.50706 * 109.46981 * 173.36410 * 8 6 5 10 10 O 1.21279 * 120.00176 * 4.43953 * 9 8 6 11 11 N 1.34775 * 119.99646 * 184.43014 * 9 8 6 12 12 C 1.47430 * 125.64900 * 0.03239 * 11 9 8 13 13 C 1.54905 * 104.82704 * 204.08613 * 12 11 9 14 14 C 1.55154 * 101.58813 * 322.99057 * 13 12 11 15 15 O 1.42906 * 110.71794 * 276.96464 * 14 13 12 16 16 C 1.50697 * 110.72389 * 153.86765 * 14 13 12 17 17 H 1.08007 * 119.99726 * 241.45701 * 16 14 13 18 18 C 1.37872 * 120.00087 * 61.45078 * 16 14 13 19 19 N 1.31520 * 120.00088 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00141 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47296 * 90.00146 * 20 18 16 22 22 H 1.48498 * 109.46988 * 210.00519 * 20 18 16 23 23 H 1.48509 * 109.46848 * 330.00049 * 20 18 16 24 24 C 1.47019 * 125.64603 * 179.71432 * 11 9 8 25 25 C 1.52999 * 109.47273 * 69.50951 * 6 5 4 26 26 C 1.52991 * 109.47467 * 293.29160 * 25 6 5 27 27 C 1.53003 * 109.47731 * 178.35404 * 26 25 6 28 28 C 1.53001 * 109.47233 * 298.35515 * 26 25 6 29 29 H 1.09003 * 109.47062 * 269.99845 * 1 2 3 30 30 H 1.09003 * 109.46909 * 29.99523 * 1 2 3 31 31 H 1.08995 * 109.47438 * 149.99467 * 1 2 3 32 32 H 0.97003 * 119.99684 * 359.97438 * 4 2 1 33 33 H 1.08999 * 109.47616 * 67.00699 * 5 4 2 34 34 H 1.09006 * 109.46910 * 307.00136 * 5 4 2 35 35 H 1.08990 * 109.46924 * 293.36464 * 8 6 5 36 36 H 1.08998 * 109.46805 * 53.36978 * 8 6 5 37 37 H 1.09002 * 110.36487 * 322.92498 * 12 11 9 38 38 H 1.09002 * 110.36809 * 85.24960 * 12 11 9 39 39 H 1.09001 * 111.00330 * 81.06491 * 13 12 11 40 40 H 1.09001 * 111.00476 * 204.87370 * 13 12 11 41 41 H 0.96696 * 113.99785 * 298.54274 * 15 14 13 42 42 H 0.96996 * 119.99827 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.88436 * 298.40416 * 24 11 9 44 44 H 1.09005 * 109.88109 * 59.56858 * 24 11 9 45 45 H 1.09002 * 109.47390 * 53.29513 * 25 6 5 46 46 H 1.09006 * 109.47295 * 173.29140 * 25 6 5 47 47 H 1.09003 * 109.47230 * 58.34777 * 26 25 6 48 48 H 1.08995 * 109.46711 * 59.99687 * 27 26 25 49 49 H 1.09000 * 109.46997 * 179.97438 * 27 26 25 50 50 H 1.09001 * 109.46721 * 299.99954 * 27 26 25 51 51 H 1.08995 * 109.47585 * 185.16324 * 28 26 25 52 52 H 1.09005 * 109.47049 * 305.16303 * 28 26 25 53 53 H 1.09004 * 109.47125 * 65.16092 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1558 -2.5988 -0.1767 7 1 3.6603 -3.2523 0.5412 8 6 5.6671 -2.6347 0.0596 9 6 6.1438 -4.0643 0.0467 10 8 5.3683 -4.9598 -0.2132 11 7 7.4319 -4.3476 0.3240 12 6 8.4765 -3.3614 0.6555 13 6 9.8096 -4.0538 0.2774 14 6 9.5242 -5.5233 0.6852 15 8 9.7549 -5.7141 2.0826 16 6 10.3646 -6.4748 -0.1267 17 1 9.8894 -7.2033 -0.7671 18 6 11.7400 -6.4154 -0.0523 19 7 12.3187 -5.5286 0.7277 20 14 12.7818 -7.5944 -1.0593 21 1 13.0754 -6.9888 -2.3830 22 1 14.0553 -7.8638 -0.3447 23 1 12.0426 -8.8682 -1.2507 24 6 8.0266 -5.6918 0.3524 25 6 3.8503 -3.0773 -1.5975 26 6 2.3363 -3.2013 -1.7794 27 6 2.0290 -3.6403 -3.2125 28 6 1.7882 -4.2403 -0.7992 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6958 -2.0072 -0.0005 33 1 4.0089 -0.7665 0.9464 34 1 4.0094 -0.5482 -0.8202 35 1 6.1714 -2.0764 -0.7291 36 1 5.8945 -2.1846 1.0259 37 1 8.3408 -2.4532 0.0682 38 1 8.4571 -3.1318 1.7208 39 1 10.0008 -3.9754 -0.7929 40 1 10.6400 -3.6426 0.8515 41 1 10.6664 -5.5449 2.3574 42 1 13.2863 -5.4870 0.7803 43 1 7.5404 -6.2962 1.1181 44 1 7.9167 -6.1665 -0.6227 45 1 4.2449 -2.3586 -2.3157 46 1 4.3167 -4.0487 -1.7619 47 1 1.8669 -2.2366 -1.5863 48 1 2.4983 -4.6049 -3.4055 49 1 0.9503 -3.7290 -3.3419 50 1 2.4194 -2.9000 -3.9109 51 1 0.7264 -4.3957 -0.9903 52 1 2.3225 -5.1813 -0.9306 53 1 1.9252 -3.8843 0.2220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853129.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:31 Heat of formation + Delta-G solvation = -157.998692 kcal Electronic energy + Delta-G solvation = -31166.932145 eV Core-core repulsion = 27037.118549 eV Total energy + Delta-G solvation = -4129.813596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41203 -40.70693 -39.33501 -38.27388 -36.05987 -35.21075 -34.21458 -34.14777 -31.59529 -30.79309 -30.08866 -28.41063 -28.07887 -26.87982 -26.43910 -23.94134 -22.22231 -21.92911 -21.41188 -20.54268 -19.95777 -19.15910 -18.22602 -17.65691 -17.39405 -16.97168 -16.87977 -16.71612 -16.31045 -15.99132 -15.75529 -15.44149 -15.02271 -14.89362 -14.68831 -14.42174 -14.17563 -13.96763 -13.85965 -13.56944 -13.33764 -13.29445 -13.25337 -13.15206 -13.04241 -13.02744 -12.85125 -12.66888 -12.50046 -12.41612 -12.29883 -12.27248 -12.10481 -11.97537 -11.57658 -11.40853 -11.26985 -11.24370 -10.96906 -10.72610 -10.57985 -10.14176 -9.88971 -9.55775 -8.25502 -6.39604 1.39828 1.43338 1.51885 1.66729 1.69178 2.01121 2.36031 2.41775 3.00030 3.48498 3.70588 3.78657 3.87927 3.95296 4.01007 4.03558 4.15134 4.24488 4.30979 4.35501 4.40767 4.50394 4.53651 4.55512 4.61357 4.66540 4.69385 4.74532 4.80065 4.80470 4.87999 4.93904 4.95800 5.05069 5.08748 5.12578 5.18418 5.22877 5.24059 5.28979 5.39425 5.46496 5.47475 5.50633 5.53937 5.64218 5.76137 6.08300 6.55413 6.61311 6.69980 7.21678 7.25969 7.30600 7.39889 8.80279 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.002340 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.666320 B =11964.574226 C =12679.509114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.500 3.500 3 O -0.599 6.599 4 N -0.721 5.721 5 C 0.126 3.874 6 C -0.075 4.075 7 H 0.081 0.919 8 C -0.123 4.123 9 C 0.518 3.482 10 O -0.577 6.577 11 N -0.614 5.614 12 C 0.104 3.896 13 C -0.126 4.126 14 C 0.234 3.766 15 O -0.593 6.593 16 C -0.562 4.562 17 H 0.049 0.951 18 C 0.038 3.962 19 N -0.904 5.904 20 Si 0.957 3.043 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.278 1.278 24 C 0.131 3.869 25 C -0.116 4.116 26 C -0.110 4.110 27 C -0.145 4.145 28 C -0.151 4.151 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.415 0.585 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.379 0.621 42 H 0.271 0.729 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.039 0.961 49 H 0.068 0.932 50 H 0.052 0.948 51 H 0.072 0.928 52 H 0.038 0.962 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.286 10.274 -2.437 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.289 3.711 3 O -0.481 6.481 4 N -0.378 5.378 5 C 0.002 3.998 6 C -0.094 4.094 7 H 0.100 0.900 8 C -0.163 4.163 9 C 0.309 3.691 10 O -0.458 6.458 11 N -0.347 5.347 12 C -0.018 4.018 13 C -0.165 4.165 14 C 0.194 3.806 15 O -0.402 6.402 16 C -0.600 4.600 17 H 0.067 0.933 18 C -0.164 4.164 19 N -0.543 5.543 20 Si 0.783 3.217 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.203 1.203 24 C 0.008 3.992 25 C -0.153 4.153 26 C -0.129 4.129 27 C -0.203 4.203 28 C -0.208 4.208 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.257 0.743 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.229 0.771 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.112 0.888 48 H 0.059 0.941 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.091 0.909 52 H 0.058 0.942 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.816 10.463 -2.533 23.435 hybrid contribution 1.685 -1.347 -0.430 2.200 sum -19.130 9.116 -2.962 21.398 Atomic orbital electron populations 1.21950 0.88397 1.06243 1.06277 1.21602 0.92307 0.82806 0.74398 1.90706 1.72155 1.33174 1.52067 1.46655 1.07517 1.09473 1.74110 1.21340 0.80289 0.95913 1.02265 1.21096 0.93729 0.95520 0.99063 0.90034 1.21645 0.96902 0.91559 1.06219 1.20979 0.79629 0.92757 0.75769 1.90623 1.54127 1.50198 1.50812 1.48752 1.09285 1.08602 1.68065 1.22520 0.86549 0.91937 1.00824 1.23071 0.95751 0.97046 1.00643 1.19615 0.88912 0.92562 0.79535 1.86119 1.34660 1.93013 1.26410 1.21719 0.92232 1.19210 1.26888 0.93266 1.25568 0.98551 0.96482 0.95802 1.69746 1.11128 1.34945 1.38519 0.85579 0.78038 0.79238 0.78875 1.19930 1.20337 1.20294 1.21706 0.93725 0.84460 0.99304 1.21819 0.96810 1.01629 0.95062 1.21527 0.95274 1.00220 0.95876 1.21811 1.01876 1.00674 0.95895 1.21934 1.01296 0.98849 0.98703 0.87185 0.88731 0.87652 0.74342 0.91430 0.91314 0.86817 0.86808 0.88095 0.90986 0.92607 0.90350 0.77100 0.91908 0.94064 0.92599 0.92174 0.92260 0.88758 0.94146 0.91308 0.92869 0.90858 0.94230 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.30 71.24 0.73 -0.71 16 2 C 0.50 8.97 7.94 87.66 0.70 9.67 16 3 O -0.60 -16.75 17.07 -3.02 -0.05 -16.80 16 4 N -0.72 -11.06 3.68 -463.08 -1.71 -12.77 16 5 C 0.13 2.24 5.03 86.38 0.43 2.68 16 6 C -0.08 -1.48 1.55 -10.79 -0.02 -1.49 16 7 H 0.08 1.75 6.09 -2.39 -0.01 1.74 16 8 C -0.12 -2.69 4.10 29.85 0.12 -2.56 16 9 C 0.52 16.99 7.58 87.66 0.66 17.65 16 10 O -0.58 -22.29 14.28 -3.03 -0.04 -22.33 16 11 N -0.61 -22.48 3.33 -811.76 -2.70 -25.18 16 12 C 0.10 3.36 6.68 86.85 0.58 3.94 16 13 C -0.13 -5.23 5.47 31.98 0.17 -5.05 16 14 C 0.23 11.17 0.85 -10.35 -0.01 11.16 16 15 O -0.59 -29.60 13.07 -148.98 -1.95 -31.55 16 16 C -0.56 -29.58 8.22 25.60 0.21 -29.37 16 17 H 0.05 2.65 7.58 -2.91 -0.02 2.63 16 18 C 0.04 1.91 5.28 84.65 0.45 2.35 16 19 N -0.90 -45.56 10.67 21.45 0.23 -45.33 16 20 Si 0.96 41.14 29.54 68.60 2.03 43.16 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 C 0.13 5.89 6.23 86.73 0.54 6.43 16 25 C -0.12 -2.46 3.98 30.59 0.12 -2.33 16 26 C -0.11 -1.82 2.37 -10.80 -0.03 -1.85 16 27 C -0.15 -2.38 9.19 71.98 0.66 -1.72 16 28 C -0.15 -2.48 8.11 71.98 0.58 -1.89 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.42 4.87 4.49 -92.71 -0.42 4.46 16 33 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 34 H 0.07 1.33 8.04 -2.38 -0.02 1.31 16 35 H 0.11 2.11 8.03 -2.39 -0.02 2.09 16 36 H 0.11 2.06 8.09 -2.39 -0.02 2.04 16 37 H 0.10 2.50 7.61 -2.39 -0.02 2.48 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 40 H 0.08 3.38 7.54 -2.39 -0.02 3.36 16 41 H 0.38 18.91 7.46 -74.06 -0.55 18.36 16 42 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 43 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 44 H 0.06 2.62 7.66 -2.38 -0.02 2.60 16 45 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 46 H 0.06 1.69 5.86 -2.38 -0.01 1.67 16 47 H 0.09 1.30 4.89 -2.39 -0.01 1.29 16 48 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 53 H 0.06 0.87 5.52 -2.38 -0.01 0.86 16 Total: -1.00 -66.70 408.56 1.67 -65.03 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.06 Total: 38.89 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.92 Total: 6.89 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -4.18 Total: -83.28 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -2.04 Total: -70.68 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -66.70 1.67 -65.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853129.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.973 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds