Wall clock time and date at job start Sat Apr 11 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46999 * 2 1 4 4 C 1.52998 * 109.47204 * 174.99890 * 3 2 1 5 5 C 1.53005 * 109.47233 * 184.99979 * 4 3 2 6 6 N 1.46499 * 109.47232 * 295.00260 * 3 2 1 7 7 C 1.46770 * 124.35134 * 119.99806 * 6 3 2 8 8 C 1.54476 * 105.47215 * 163.00424 * 7 6 3 9 9 H 1.09002 * 110.96839 * 143.56984 * 8 7 6 10 10 C 1.50695 * 110.96994 * 267.29572 * 8 7 6 11 11 O 1.21280 * 120.00180 * 0.02562 * 10 8 7 12 12 N 1.34784 * 119.99981 * 180.02562 * 10 8 7 13 13 C 1.46496 * 119.99865 * 359.97438 * 12 10 8 14 14 C 1.50697 * 109.47056 * 94.31960 * 13 12 10 15 15 H 1.08010 * 119.99750 * 275.42997 * 14 13 12 16 16 C 1.37872 * 120.00328 * 95.15865 * 14 13 12 17 17 N 1.31519 * 119.99626 * 7.64204 * 16 14 13 18 18 Si 1.86800 * 120.00193 * 187.64997 * 16 14 13 19 19 H 1.48505 * 109.46992 * 89.99681 * 18 16 14 20 20 H 1.48499 * 109.47248 * 209.99481 * 18 16 14 21 21 H 1.48502 * 109.47249 * 329.99560 * 18 16 14 22 22 C 1.46503 * 119.99949 * 180.02562 * 12 10 8 23 23 C 1.53000 * 109.46849 * 275.60372 * 22 12 10 24 24 O 1.42903 * 109.47287 * 65.66082 * 23 22 12 25 25 C 1.42900 * 114.00065 * 179.97438 * 24 23 22 26 26 C 1.54625 * 101.76873 * 25.41649 * 8 7 6 27 27 C 1.34422 * 124.34872 * 300.02235 * 6 3 2 28 28 O 1.21283 * 124.93905 * 0.34835 * 27 6 3 29 29 H 1.09001 * 109.46703 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46842 * 299.99681 * 1 2 3 31 31 H 1.08995 * 109.47201 * 60.00010 * 1 2 3 32 32 H 1.08999 * 109.47342 * 240.00475 * 2 1 3 33 33 H 1.08997 * 109.47692 * 119.99816 * 2 1 3 34 34 H 1.09003 * 109.47072 * 55.00345 * 3 2 1 35 35 H 1.08993 * 109.47205 * 305.00261 * 4 3 2 36 36 H 1.08998 * 109.46769 * 65.00692 * 4 3 2 37 37 H 1.09003 * 109.46789 * 300.00465 * 5 4 3 38 38 H 1.09001 * 109.46759 * 59.99700 * 5 4 3 39 39 H 1.08997 * 109.47143 * 180.02562 * 5 4 3 40 40 H 1.08999 * 110.24381 * 44.00040 * 7 6 3 41 41 H 1.08997 * 110.24287 * 282.00563 * 7 6 3 42 42 H 1.08999 * 109.47209 * 334.31522 * 13 12 10 43 43 H 1.09001 * 109.46880 * 214.32030 * 13 12 10 44 44 H 0.97004 * 119.99303 * 184.90698 * 17 16 14 45 45 H 1.08996 * 109.47172 * 35.59868 * 22 12 10 46 46 H 1.08991 * 109.46993 * 155.60496 * 22 12 10 47 47 H 1.08996 * 109.47401 * 185.66097 * 23 22 12 48 48 H 1.09005 * 109.47307 * 305.66504 * 23 22 12 49 49 H 1.08998 * 109.47278 * 299.99903 * 25 24 23 50 50 H 1.09000 * 109.47122 * 60.00414 * 25 24 23 51 51 H 1.09007 * 109.46794 * 180.02562 * 25 24 23 52 52 H 1.09006 * 110.48716 * 93.87409 * 26 8 7 53 53 H 1.08996 * 110.49093 * 216.52715 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0644 2.8851 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 0.8074 3.2949 -1.3328 8 6 1.0285 3.8599 -2.7535 9 1 0.1048 4.2758 -3.1559 10 6 2.1281 4.8903 -2.7590 11 8 2.7037 5.1684 -1.7284 12 7 2.4720 5.5027 -3.9094 13 6 1.7771 5.1663 -5.1544 14 6 0.6473 6.1382 -5.3775 15 1 -0.3115 5.9683 -4.9100 16 6 0.8390 7.2474 -6.1737 17 7 1.9542 7.3806 -6.8581 18 14 -0.4849 8.5609 -6.2803 19 1 -0.2534 9.5835 -5.2285 20 1 -0.4359 9.2058 -7.6170 21 1 -1.8178 7.9377 -6.0799 22 6 3.5414 6.5040 -3.9148 23 6 2.9673 7.8654 -3.5174 24 8 2.5205 7.8164 -2.1609 25 6 1.9640 9.0445 -1.6875 26 6 1.4524 2.5941 -3.5338 27 6 2.0245 1.6789 -2.4737 28 8 2.7186 0.7090 -2.6941 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6054 1.9816 0.8419 35 1 3.8570 0.8801 1.0113 36 1 4.0029 0.9838 -0.7597 37 1 3.7721 3.4494 -0.6345 38 1 3.6262 3.3459 1.1365 39 1 5.1508 2.8865 0.3403 40 1 1.1152 4.0250 -0.5843 41 1 -0.2399 3.0277 -1.1919 42 1 1.3777 4.1544 -5.0856 43 1 2.4768 5.2248 -5.9881 44 1 2.1200 8.1929 -7.3617 45 1 4.3143 6.2140 -3.2032 46 1 3.9729 6.5692 -4.9135 47 1 3.7389 8.6286 -3.6184 48 1 2.1274 8.1095 -4.1679 49 1 2.7151 9.8319 -1.7504 50 1 1.1034 9.3135 -2.3000 51 1 1.6494 8.9250 -0.6507 52 1 0.5875 2.1321 -4.0102 53 1 2.2119 2.8398 -4.2759 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136280.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:03 Heat of formation + Delta-G solvation = -134.739362 kcal Electronic energy + Delta-G solvation = -33127.838106 eV Core-core repulsion = 28999.033110 eV Total energy + Delta-G solvation = -4128.804996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99443 -40.19834 -38.50556 -37.58653 -36.55571 -36.42383 -34.27813 -32.96224 -32.32356 -30.72285 -28.81433 -28.54552 -27.42371 -26.99384 -24.96259 -24.38879 -22.97582 -22.85210 -22.58629 -19.86544 -19.80769 -18.76764 -17.94753 -17.58489 -17.34330 -17.13765 -16.58826 -16.47791 -16.34032 -15.96158 -15.72827 -15.44244 -15.27474 -14.99616 -14.68025 -14.41970 -14.16180 -14.03631 -13.87151 -13.80823 -13.65995 -13.43421 -13.31328 -13.25244 -12.96204 -12.88895 -12.63802 -12.57439 -12.47487 -12.42090 -12.33800 -11.93646 -11.88658 -11.82704 -11.73595 -11.69948 -11.65108 -11.32661 -10.70319 -10.50612 -10.38789 -10.22091 -9.53762 -9.13465 -8.11970 -6.25525 1.37877 1.45630 1.50274 1.63839 2.03195 2.14037 2.42769 2.49552 3.07846 3.23308 3.40644 3.53778 3.82550 3.87079 4.01555 4.07424 4.18601 4.32564 4.38553 4.38712 4.45022 4.50989 4.54175 4.58902 4.59290 4.62081 4.63964 4.67573 4.74124 4.76359 4.85379 4.89600 4.95439 4.96532 5.00967 5.04115 5.06718 5.12606 5.15751 5.24763 5.26301 5.42236 5.45014 5.51035 5.73249 5.80869 6.04965 6.20779 6.24367 6.42189 6.81388 7.12295 7.26276 7.44625 7.70072 8.89286 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.003898 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.460135 B = 7182.296037 C = 7907.304384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.157 3.843 4 C -0.133 4.133 5 C -0.147 4.147 6 N -0.595 5.595 7 C 0.123 3.877 8 C -0.112 4.112 9 H 0.130 0.870 10 C 0.510 3.490 11 O -0.565 6.565 12 N -0.589 5.589 13 C 0.214 3.786 14 C -0.533 4.533 15 H 0.056 0.944 16 C 0.050 3.950 17 N -0.900 5.900 18 Si 0.924 3.076 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.267 1.267 22 C 0.142 3.858 23 C 0.058 3.942 24 O -0.388 6.388 25 C 0.030 3.970 26 C -0.142 4.142 27 C 0.516 3.484 28 O -0.573 6.573 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.264 0.736 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.046 0.954 50 H 0.027 0.973 51 H 0.095 0.905 52 H 0.135 0.865 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -6.290 12.156 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.056 3.944 4 C -0.171 4.171 5 C -0.204 4.204 6 N -0.328 5.328 7 C 0.001 3.999 8 C -0.134 4.134 9 H 0.148 0.852 10 C 0.298 3.702 11 O -0.446 6.446 12 N -0.320 5.320 13 C 0.095 3.905 14 C -0.572 4.572 15 H 0.074 0.926 16 C -0.153 4.153 17 N -0.538 5.538 18 Si 0.751 3.249 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.191 1.191 22 C 0.018 3.982 23 C -0.020 4.020 24 O -0.307 6.307 25 C -0.066 4.066 26 C -0.182 4.182 27 C 0.304 3.696 28 O -0.454 6.454 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.113 0.887 52 H 0.153 0.847 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.595 -6.759 12.557 14.495 hybrid contribution -0.362 1.661 -0.881 1.915 sum -2.956 -5.099 11.676 13.079 Atomic orbital electron populations 1.21686 0.94411 1.01946 1.01985 1.21886 0.97278 0.95355 1.02779 1.21227 0.94371 0.93697 0.85148 1.21875 0.95518 0.97458 1.02258 1.21709 1.00067 0.96420 1.02221 1.48303 1.49951 1.28688 1.05817 1.22100 0.95606 0.86143 0.96085 1.22209 0.99774 0.93969 0.97422 0.85215 1.20469 0.84251 0.82224 0.83266 1.90577 1.55455 1.66070 1.32453 1.48823 1.35237 1.38125 1.09813 1.19638 0.92604 0.95756 0.82515 1.21584 0.98145 1.09304 1.28205 0.92621 1.25386 0.96721 0.99419 0.93754 1.69976 1.26550 1.27107 1.30146 0.86100 0.81326 0.80507 0.76993 1.20864 1.21356 1.19094 1.21057 0.89686 0.87162 1.00342 1.22852 0.98182 0.97814 0.83151 1.88043 1.80719 1.34162 1.27763 1.22771 0.96952 0.86813 1.00099 1.22452 1.04214 0.94111 0.97435 1.21012 0.79008 0.84257 0.85294 1.90629 1.40110 1.30019 1.84600 0.92269 0.91335 0.93658 0.93138 0.89316 0.87618 0.89177 0.93581 0.93452 0.92242 0.93668 0.89702 0.87611 0.92132 0.94024 0.92632 0.92524 0.89864 0.93634 0.93369 0.93567 0.95470 0.88687 0.84695 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.80 71.98 0.71 -1.77 16 2 C -0.13 -2.80 5.36 30.60 0.16 -2.63 16 3 C 0.16 3.63 2.25 44.99 0.10 3.74 16 4 C -0.13 -3.42 5.36 30.60 0.16 -3.26 16 5 C -0.15 -4.22 9.80 71.98 0.71 -3.51 16 6 N -0.60 -15.96 1.74 -794.02 -1.38 -17.34 16 7 C 0.12 3.09 6.63 86.83 0.58 3.67 16 8 C -0.11 -3.37 2.58 -10.49 -0.03 -3.39 16 9 H 0.13 3.71 8.04 -2.39 -0.02 3.69 16 10 C 0.51 19.67 6.59 87.65 0.58 20.25 16 11 O -0.57 -23.88 12.14 13.65 0.17 -23.72 16 12 N -0.59 -24.26 2.46 -826.18 -2.03 -26.30 16 13 C 0.21 9.09 5.12 85.63 0.44 9.53 16 14 C -0.53 -24.70 9.02 25.60 0.23 -24.47 16 15 H 0.06 2.55 7.83 -2.91 -0.02 2.52 16 16 C 0.05 2.38 4.00 84.65 0.34 2.72 16 17 N -0.90 -44.69 12.76 21.45 0.27 -44.41 16 18 Si 0.92 38.80 29.55 68.60 2.03 40.83 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 C 0.14 5.87 5.93 86.38 0.51 6.38 16 23 C 0.06 2.35 6.28 71.98 0.45 2.81 16 24 O -0.39 -15.77 8.88 -132.30 -1.17 -16.95 16 25 C 0.03 0.97 11.01 113.37 1.25 2.22 16 26 C -0.14 -4.16 5.08 30.59 0.16 -4.00 16 27 C 0.52 16.58 7.37 87.90 0.65 17.23 16 28 O -0.57 -22.06 15.02 -3.04 -0.05 -22.11 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.87 7.75 -2.39 -0.02 0.86 16 32 H 0.05 1.37 6.62 -2.39 -0.02 1.35 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.48 6.65 -2.39 -0.02 1.46 16 37 H 0.05 1.69 5.95 -2.39 -0.01 1.68 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 2.37 7.02 -2.39 -0.02 2.35 16 41 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 2.28 4.48 -2.39 -0.01 2.27 16 43 H 0.04 1.97 7.00 -2.39 -0.02 1.96 16 44 H 0.26 12.76 8.32 -92.71 -0.77 11.99 16 45 H 0.06 2.37 7.60 -2.39 -0.02 2.35 16 46 H 0.08 3.52 7.87 -2.39 -0.02 3.51 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.05 2.20 6.21 -2.38 -0.01 2.19 16 49 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 52 H 0.14 3.20 8.14 -2.38 -0.02 3.18 16 53 H 0.09 3.07 6.36 -2.39 -0.02 3.05 16 Total: -1.00 -60.43 409.52 5.70 -54.72 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.88 Total: 29.78 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 6.99 Total: 25.50 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -3.14 Total: -88.05 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -1.05 Total: -62.77 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -60.43 5.70 -54.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136280.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.017 kcal (2) G-P(sol) polarization free energy of solvation -60.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds