Wall clock time and date at job start Sat Apr 11 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 C 1.52998 * 109.47168 * 239.99809 * 2 1 3 5 5 C 1.50700 * 109.46988 * 60.00238 * 4 2 1 6 6 H 1.08003 * 120.00229 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00017 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99692 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99999 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47385 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46982 * 119.99934 * 9 7 5 12 12 H 1.48503 * 109.47144 * 239.99958 * 9 7 5 13 13 C 1.52994 * 109.46826 * 119.99836 * 2 1 3 14 14 N 1.46501 * 109.47495 * 299.99648 * 13 2 1 15 15 C 1.34780 * 120.00179 * 179.97438 * 14 13 2 16 16 O 1.21586 * 119.99854 * 4.99167 * 15 14 13 17 17 N 1.34770 * 119.99579 * 184.98402 * 15 14 13 18 18 C 1.46932 * 120.61019 * 354.75350 * 17 15 14 19 19 C 1.53194 * 108.76968 * 233.57597 * 18 17 15 20 20 C 1.53031 * 109.34149 * 305.41178 * 19 18 17 21 21 C 1.53042 * 109.54053 * 61.35092 * 20 19 18 22 22 H 1.09001 * 109.49667 * 58.58430 * 21 20 19 23 23 C 1.52995 * 109.50236 * 178.68546 * 21 20 19 24 24 O 1.43758 * 109.63077 * 299.36189 * 23 21 20 25 25 C 1.44777 * 104.81630 * 215.80653 * 24 23 21 26 26 C 1.54908 * 101.72345 * 36.10560 * 25 24 23 27 27 O 1.43363 * 109.63295 * 180.02562 * 23 21 20 28 28 C 1.46928 * 120.62716 * 174.77536 * 17 15 14 29 29 H 1.08999 * 109.46822 * 300.00217 * 1 2 3 30 30 H 1.09002 * 109.46906 * 60.00216 * 1 2 3 31 31 H 1.08992 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46727 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47068 * 299.99684 * 3 2 1 34 34 H 1.08999 * 109.47465 * 60.00176 * 3 2 1 35 35 H 1.08996 * 109.47498 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47037 * 300.00503 * 4 2 1 37 37 H 0.96999 * 120.00038 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47228 * 179.97438 * 13 2 1 39 39 H 1.09005 * 109.47148 * 60.00187 * 13 2 1 40 40 H 0.97001 * 119.99846 * 0.02562 * 14 13 2 41 41 H 1.08995 * 109.56541 * 113.80513 * 18 17 15 42 42 H 1.08994 * 109.61279 * 353.37823 * 18 17 15 43 43 H 1.08998 * 109.49798 * 185.44169 * 19 18 17 44 44 H 1.09003 * 109.49710 * 65.38296 * 19 18 17 45 45 H 1.08998 * 109.46153 * 181.36985 * 20 19 18 46 46 H 1.08997 * 109.46004 * 301.32964 * 20 19 18 47 47 H 1.08995 * 109.62741 * 59.60018 * 23 21 20 48 48 H 1.09000 * 110.98131 * 277.99617 * 25 24 23 49 49 H 1.09007 * 110.97668 * 154.20989 * 25 24 23 50 50 H 1.09003 * 110.69868 * 206.03957 * 26 25 24 51 51 H 1.09006 * 110.69978 * 82.83013 * 26 25 24 52 52 H 1.09006 * 109.58754 * 6.59960 * 28 17 15 53 53 H 1.09001 * 109.70633 * 246.25024 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7320 8 7 2.6265 -1.5516 -3.8526 9 14 1.2472 0.3979 -5.2572 10 1 0.4218 1.5644 -4.8531 11 1 2.4020 0.8644 -6.0660 12 1 0.4219 -0.5357 -6.0650 13 6 2.0399 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8768 -0.4913 3.6696 16 8 2.6481 -1.4244 3.7828 17 7 1.3471 0.0823 4.7680 18 6 0.5053 1.2812 4.6539 19 6 1.0682 2.3682 5.5750 20 6 1.1869 1.8159 6.9973 21 6 2.1518 0.6280 7.0062 22 1 3.1262 0.9480 6.6370 23 6 2.2951 0.0971 8.4339 24 8 2.8225 1.1305 9.2828 25 6 3.6839 0.4378 10.2178 26 6 4.2895 -0.6732 9.3241 27 8 3.1990 -1.0156 8.4456 28 6 1.6008 -0.4790 6.1019 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8900 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2492 37 1 2.8602 -1.8834 -4.7335 38 1 3.1299 -0.7216 1.2491 39 1 1.6766 -1.7489 1.2492 40 1 0.9938 0.7579 2.3564 41 1 -0.5148 1.0408 4.9533 42 1 0.5119 1.6361 3.6234 43 1 0.3991 3.2286 5.5736 44 1 2.0527 2.6724 5.2195 45 1 1.5643 2.5952 7.6592 46 1 0.2061 1.4896 7.3431 47 1 1.3206 -0.2182 8.8068 48 1 3.1063 0.0086 11.0364 49 1 4.4617 1.1009 10.5967 50 1 4.5846 -1.5332 9.9254 51 1 5.1368 -0.2908 8.7549 52 1 2.3300 -1.2858 6.0262 53 1 0.6716 -0.8647 6.5212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807593295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:17 Heat of formation + Delta-G solvation = -152.397909 kcal Electronic energy + Delta-G solvation = -30972.036860 eV Core-core repulsion = 26842.466132 eV Total energy + Delta-G solvation = -4129.570728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79765 -41.17816 -39.16599 -38.17140 -36.05055 -35.40569 -34.49515 -33.53549 -32.65459 -30.27416 -29.10272 -27.96076 -27.83257 -26.30584 -25.88098 -24.58146 -24.16739 -23.01676 -21.78841 -20.78011 -19.99590 -18.90822 -18.35331 -18.22394 -17.78063 -17.24461 -16.97316 -16.53269 -16.43206 -15.93089 -15.59380 -15.41016 -15.38487 -15.07256 -14.91707 -14.65161 -14.47015 -14.35618 -14.17992 -13.96046 -13.92119 -13.73641 -13.64590 -13.39893 -12.88945 -12.68929 -12.59289 -12.52396 -12.41959 -12.34493 -12.22146 -11.98294 -11.92257 -11.86128 -11.54361 -11.53576 -11.29476 -11.19737 -10.97931 -10.83986 -10.57165 -10.51392 -10.21777 -9.49204 -8.12928 -6.20798 1.42849 1.43515 1.55260 1.57797 2.09366 2.44628 2.46979 2.88691 3.01123 3.21486 3.62667 3.74062 3.75985 3.84246 3.96708 4.01755 4.07600 4.09561 4.12598 4.21803 4.25118 4.34285 4.38228 4.53724 4.60275 4.66508 4.69411 4.72910 4.73998 4.75628 4.83980 4.85185 4.91710 4.96338 5.03370 5.11158 5.11991 5.12773 5.24628 5.39483 5.40295 5.48647 5.50586 5.52907 5.54282 5.59685 5.81060 5.90211 5.91512 6.04382 6.31530 6.93470 6.97178 7.46771 7.53919 8.99889 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027514 B = 0.002041 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.407548 B =13713.107725 C =14254.974707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.161 3.839 14 N -0.723 5.723 15 C 0.698 3.302 16 O -0.640 6.640 17 N -0.625 5.625 18 C 0.102 3.898 19 C -0.128 4.128 20 C -0.102 4.102 21 C -0.107 4.107 22 H 0.057 0.943 23 C 0.241 3.759 24 O -0.390 6.390 25 C 0.017 3.983 26 C 0.011 3.989 27 O -0.407 6.407 28 C 0.142 3.858 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.067 0.933 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.408 0.592 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.129 0.871 50 H 0.121 0.879 51 H 0.069 0.931 52 H 0.065 0.935 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 10.480 30.892 33.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.205 4.205 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.178 1.178 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.036 3.964 14 N -0.382 5.382 15 C 0.399 3.601 16 O -0.522 6.522 17 N -0.362 5.362 18 C -0.020 4.020 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.127 4.127 22 H 0.075 0.925 23 C 0.145 3.855 24 O -0.310 6.310 25 C -0.059 4.059 26 C -0.064 4.064 27 O -0.329 6.329 28 C 0.019 3.981 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.003 0.997 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.248 0.752 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.119 0.881 48 H 0.112 0.888 49 H 0.147 0.853 50 H 0.139 0.861 51 H 0.088 0.912 52 H 0.084 0.916 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.759 9.756 30.701 32.564 hybrid contribution 0.388 -0.118 -1.274 1.337 sum -4.370 9.638 29.428 31.273 Atomic orbital electron populations 1.21682 0.93376 1.01034 1.01637 1.20707 0.96864 0.96261 0.92539 1.21682 0.99839 0.94638 1.01590 1.18972 0.94241 0.94246 0.92331 1.21619 1.30282 1.12051 0.90928 0.90716 1.25993 0.95737 0.95922 1.02849 1.70139 1.38866 1.25033 1.24007 0.85453 0.77994 0.78817 0.79101 1.17848 1.21166 1.21120 1.21067 0.97368 0.94952 0.83034 1.45185 1.56302 1.33319 1.03394 1.16102 0.80423 0.82055 0.81477 1.90877 1.41104 1.33906 1.86328 1.47263 1.53284 1.30938 1.04722 1.21993 0.94794 0.83972 1.01230 1.21900 1.02064 0.98212 0.94487 1.21423 0.99193 0.96116 0.97258 1.21857 1.00439 0.96953 0.93438 0.92461 1.24081 0.93102 0.77847 0.90452 1.89200 1.64546 1.31323 1.45953 1.24612 0.94142 0.94451 0.92685 1.24419 0.90096 1.00172 0.91751 1.88920 1.35731 1.39517 1.68687 1.21243 1.01225 0.95354 0.80268 0.91313 0.92299 0.94398 0.94619 0.92239 0.91443 0.99706 0.99564 0.93218 0.94245 0.93937 0.75181 0.88732 0.89683 0.87490 0.92855 0.90563 0.89702 0.88055 0.88797 0.85339 0.86146 0.91230 0.91608 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 2 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 3 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.50 7.65 25.60 0.20 -27.30 16 6 H 0.07 3.74 5.68 -2.91 -0.02 3.72 16 7 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 8 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 9 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 10 H -0.25 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 13 C 0.16 6.13 4.57 86.38 0.39 6.53 16 14 N -0.72 -22.02 4.87 -478.54 -2.33 -24.35 16 15 C 0.70 23.34 8.29 179.06 1.49 24.83 16 16 O -0.64 -27.93 15.77 -3.99 -0.06 -28.00 16 17 N -0.63 -15.08 2.97 -836.90 -2.49 -17.56 16 18 C 0.10 1.52 6.39 86.36 0.55 2.07 16 19 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 20 C -0.10 -1.31 5.05 30.62 0.15 -1.16 16 21 C -0.11 -1.99 2.36 -10.72 -0.03 -2.01 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 C 0.24 4.05 3.50 71.98 0.25 4.30 16 24 O -0.39 -6.16 10.69 -126.22 -1.35 -7.51 16 25 C 0.02 0.16 7.95 72.63 0.58 0.74 16 26 C 0.01 0.15 8.07 72.63 0.59 0.73 16 27 O -0.41 -8.31 10.67 -126.22 -1.35 -9.66 16 28 C 0.14 3.24 5.50 86.36 0.48 3.71 16 29 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 30 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 34 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 35 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.41 9.66 3.65 -92.71 -0.34 9.32 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.16 5.65 -2.39 -0.01 1.15 16 43 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.99 7.67 -2.39 -0.02 0.97 16 46 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 52 H 0.07 2.01 6.73 -2.38 -0.02 1.99 16 53 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -77.12 403.72 1.84 -75.29 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.55 Total: 19.67 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.55 Total: 3.74 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -4.53 Total: -99.34 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -2.76 Total: -45.17 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -77.12 1.84 -75.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807593295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.111 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds