Wall clock time and date at job start Sat Apr 11 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34631 * 117.00031 * 2 1 4 4 O 1.21503 * 120.00384 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99842 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.63150 * 179.97438 * 5 3 2 7 7 C 1.53202 * 108.89303 * 126.29840 * 6 5 3 8 8 C 1.53345 * 109.14723 * 54.57511 * 7 6 5 9 9 C 1.50701 * 109.41789 * 178.67402 * 8 7 6 10 10 O 1.21277 * 119.99645 * 87.92464 * 9 8 7 11 11 N 1.34780 * 120.00071 * 267.92554 * 9 8 7 12 12 C 1.46497 * 119.99706 * 4.10680 * 11 9 8 13 13 C 1.50698 * 109.47071 * 84.29034 * 12 11 9 14 14 H 1.08007 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00188 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99911 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00360 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47196 * 89.99166 * 17 15 13 19 19 H 1.48499 * 109.47372 * 209.99580 * 17 15 13 20 20 H 1.48500 * 109.46939 * 329.99538 * 17 15 13 21 21 C 1.46499 * 119.99540 * 184.11089 * 11 9 8 22 22 C 1.52998 * 109.47367 * 87.53562 * 21 11 9 23 23 C 1.52996 * 109.47371 * 54.83975 * 22 21 11 24 24 C 1.53005 * 109.47198 * 174.84075 * 22 21 11 25 25 C 1.53009 * 109.46801 * 294.83702 * 22 21 11 26 26 C 1.53040 * 109.61115 * 298.71330 * 8 7 6 27 27 C 1.46924 * 120.62945 * 359.97438 * 5 3 2 28 28 H 1.08994 * 109.47458 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46681 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47067 * 59.99565 * 1 2 3 31 31 H 1.08992 * 109.59061 * 246.15584 * 6 5 3 32 32 H 1.09001 * 109.58607 * 6.44023 * 6 5 3 33 33 H 1.08997 * 109.49848 * 174.66138 * 7 6 5 34 34 H 1.09001 * 109.49608 * 294.75585 * 7 6 5 35 35 H 1.09004 * 109.42204 * 58.75649 * 8 7 6 36 36 H 1.09007 * 109.46571 * 204.28220 * 12 11 9 37 37 H 1.08991 * 109.47553 * 324.28118 * 12 11 9 38 38 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46717 * 207.53272 * 21 11 9 40 40 H 1.08997 * 109.47541 * 327.52825 * 21 11 9 41 41 H 1.08994 * 109.47418 * 60.00066 * 23 22 21 42 42 H 1.08999 * 109.47230 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47005 * 300.00042 * 23 22 21 44 44 H 1.09003 * 109.46889 * 59.99947 * 24 22 21 45 45 H 1.08999 * 109.46833 * 179.97438 * 24 22 21 46 46 H 1.08994 * 109.46908 * 299.99517 * 24 22 21 47 47 H 1.09003 * 109.46661 * 64.69968 * 25 22 21 48 48 H 1.08999 * 109.46886 * 184.70218 * 25 22 21 49 49 H 1.08998 * 109.46676 * 304.70314 * 25 22 21 50 50 H 1.08991 * 109.49758 * 301.42375 * 26 8 7 51 51 H 1.08998 * 109.52062 * 181.33727 * 26 8 7 52 52 H 1.08995 * 109.58743 * 353.41600 * 27 5 3 53 53 H 1.09003 * 109.58678 * 113.70184 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0906 2.5717 -0.0011 7 6 5.0814 2.6135 1.1667 8 6 6.0234 1.4074 1.0705 9 6 7.0216 1.4601 2.1983 10 8 6.7547 0.9556 3.2683 11 7 8.2110 2.0679 2.0177 12 6 8.4982 2.7552 0.7563 13 6 7.9374 4.1530 0.8068 14 1 7.4184 4.4951 1.6901 15 6 8.0857 4.9949 -0.2749 16 7 8.7172 4.5783 -1.3507 17 14 7.3899 6.7274 -0.2126 18 1 8.4148 7.6531 0.3332 19 1 7.0124 7.1588 -1.5825 20 1 6.1894 6.7474 0.6612 21 6 9.2164 2.0411 3.0829 22 6 10.0693 0.7782 2.9476 23 6 10.6655 0.7139 1.5400 24 6 11.1991 0.8128 3.9789 25 6 9.1963 -0.4550 3.1886 26 6 5.2124 0.1132 1.1675 27 6 4.2228 0.0467 -0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.6275 2.7027 -0.9405 32 1 3.3561 3.3688 0.1142 33 1 5.6600 3.5360 1.1201 34 1 4.5349 2.5735 2.1090 35 1 6.5511 1.4347 0.1171 36 1 9.5768 2.8018 0.6054 37 1 8.0393 2.2091 -0.0678 38 1 8.8219 5.1707 -2.1116 39 1 9.8547 2.9210 3.0022 40 1 8.7185 2.0412 4.0526 41 1 11.2874 1.5924 1.3683 42 1 11.2729 -0.1861 1.4435 43 1 9.8607 0.6892 0.8053 44 1 10.7743 0.8586 4.9817 45 1 11.8064 -0.0871 3.8827 46 1 11.8209 1.6913 3.8071 47 1 8.4423 -0.5253 2.4046 48 1 9.8193 -1.3494 3.1750 49 1 8.7056 -0.3688 4.1581 50 1 4.6650 0.0967 2.1098 51 1 5.8858 -0.7428 1.1228 52 1 3.5758 -0.8225 0.1177 53 1 4.7686 -0.0292 -0.9411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826578031.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:35 Heat of formation + Delta-G solvation = -145.402002 kcal Electronic energy + Delta-G solvation = -32525.560990 eV Core-core repulsion = 28396.293628 eV Total energy + Delta-G solvation = -4129.267363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.84861 -41.16058 -39.10300 -37.92554 -37.21459 -36.07205 -34.22033 -33.91973 -32.14366 -29.48491 -28.86091 -28.11935 -28.05896 -27.68345 -26.01232 -24.74339 -24.29725 -22.86723 -21.17828 -20.19632 -19.46424 -19.03742 -18.51357 -18.13954 -17.86368 -17.52697 -16.95061 -16.51888 -16.16121 -15.81002 -15.41340 -15.32650 -15.18625 -14.85326 -14.78061 -14.61618 -14.30977 -14.21867 -13.96029 -13.71857 -13.50563 -13.35230 -13.23259 -12.95949 -12.92484 -12.92034 -12.74363 -12.62040 -12.47884 -12.44314 -12.28180 -11.96961 -11.94023 -11.81255 -11.79283 -11.65450 -11.60936 -11.46630 -11.40796 -11.36766 -10.60890 -10.37169 -9.82436 -9.28599 -8.14238 -6.25253 1.13080 1.41214 1.46915 1.52961 1.67209 1.86670 2.36405 2.50967 2.91120 3.16505 3.67005 3.79429 3.87040 3.95524 3.97232 4.06997 4.10789 4.26048 4.32348 4.36762 4.37685 4.46106 4.57885 4.62017 4.67983 4.71041 4.75240 4.77740 4.80583 4.87532 4.88965 4.93248 4.96121 4.97865 5.04532 5.09079 5.11304 5.14788 5.24822 5.26210 5.27477 5.34571 5.41205 5.47693 5.53393 5.56128 5.73431 5.97853 6.16214 6.25130 6.66473 6.92006 7.15528 7.40231 7.53001 8.90249 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.004457 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.263990 B = 6280.694711 C = 8678.433067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.369 6.369 3 C 0.645 3.355 4 O -0.611 6.611 5 N -0.590 5.590 6 C 0.138 3.862 7 C -0.116 4.116 8 C -0.097 4.097 9 C 0.521 3.479 10 O -0.588 6.588 11 N -0.592 5.592 12 C 0.255 3.745 13 C -0.534 4.534 14 H 0.050 0.950 15 C 0.035 3.965 16 N -0.913 5.913 17 Si 0.935 3.065 18 H -0.280 1.280 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.126 3.874 22 C -0.081 4.081 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.106 4.106 27 C 0.117 3.883 28 H 0.139 0.861 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.033 0.967 48 H 0.062 0.938 49 H 0.044 0.956 50 H 0.061 0.939 51 H 0.088 0.912 52 H 0.111 0.889 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 -12.033 2.045 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 C 0.400 3.600 4 O -0.503 6.503 5 N -0.330 5.330 6 C 0.016 3.984 7 C -0.154 4.154 8 C -0.118 4.118 9 C 0.310 3.690 10 O -0.470 6.470 11 N -0.321 5.321 12 C 0.134 3.866 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.166 4.166 16 N -0.552 5.552 17 Si 0.762 3.238 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.002 3.998 22 C -0.082 4.082 23 C -0.189 4.189 24 C -0.189 4.189 25 C -0.175 4.175 26 C -0.145 4.145 27 C -0.004 4.004 28 H 0.157 0.843 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.107 0.893 52 H 0.129 0.871 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.999 -11.958 2.398 13.181 hybrid contribution -0.333 1.626 -0.115 1.664 sum -5.332 -10.332 2.283 11.849 Atomic orbital electron populations 1.23500 0.72912 1.05666 1.02397 1.86234 1.25666 1.29574 1.86790 1.18188 0.83424 0.82333 0.76016 1.90945 1.65062 1.36214 1.58056 1.47099 1.01775 1.09371 1.74706 1.21546 0.94432 0.83276 0.99101 1.21875 0.96442 0.99285 0.97811 1.21257 0.95219 0.97023 0.98290 1.20633 0.82389 0.76951 0.88993 1.90566 1.78422 1.49587 1.28437 1.48154 1.14308 1.52004 1.17604 1.19154 0.96596 0.90498 0.80325 1.21606 1.36399 0.98747 1.00530 0.93179 1.25375 0.95307 1.00864 0.95050 1.69976 1.42425 1.37472 1.05344 0.85904 0.78974 0.81562 0.77386 1.20618 1.20875 1.19588 1.21477 0.89968 0.97815 0.90501 1.20936 0.95741 0.94858 0.96645 1.21829 1.00129 1.01481 0.95468 1.21750 0.96900 1.02540 0.97700 1.21696 0.98388 0.96718 1.00739 1.21718 0.97667 0.96232 0.98886 1.21916 0.93467 0.85916 0.99102 0.84284 0.92454 0.92084 0.89777 0.89722 0.89124 0.93068 0.88639 0.95368 0.95250 0.92507 0.91312 0.92163 0.93332 0.91579 0.93915 0.92523 0.91104 0.92316 0.94751 0.91932 0.93666 0.92048 0.89304 0.87103 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 10.56 113.37 1.20 2.05 16 2 O -0.37 -9.14 9.20 -55.40 -0.51 -9.65 16 3 C 0.65 20.14 8.43 129.79 1.09 21.23 16 4 O -0.61 -22.77 15.54 19.83 0.31 -22.46 16 5 N -0.59 -17.37 2.97 -949.18 -2.82 -20.19 16 6 C 0.14 4.46 6.42 86.37 0.55 5.02 16 7 C -0.12 -4.11 5.36 30.78 0.17 -3.94 16 8 C -0.10 -3.28 1.90 -11.41 -0.02 -3.31 16 9 C 0.52 20.11 5.13 87.66 0.45 20.56 16 10 O -0.59 -24.57 13.97 -3.02 -0.04 -24.61 16 11 N -0.59 -23.06 1.94 -826.17 -1.60 -24.67 16 12 C 0.25 11.12 3.60 85.63 0.31 11.43 16 13 C -0.53 -25.75 7.41 25.60 0.19 -25.56 16 14 H 0.05 2.51 7.33 -2.91 -0.02 2.49 16 15 C 0.04 1.73 5.46 84.65 0.46 2.20 16 16 N -0.91 -47.35 13.29 21.45 0.28 -47.07 16 17 Si 0.94 40.51 29.54 68.60 2.03 42.54 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C 0.13 4.42 4.58 86.38 0.40 4.82 16 22 C -0.08 -2.34 0.85 -52.18 -0.04 -2.38 16 23 C -0.13 -3.85 7.20 71.98 0.52 -3.34 16 24 C -0.13 -3.04 8.47 71.98 0.61 -2.43 16 25 C -0.12 -3.46 7.10 71.99 0.51 -2.95 16 26 C -0.11 -2.96 4.96 30.69 0.15 -2.81 16 27 C 0.12 2.79 6.45 86.38 0.56 3.34 16 28 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.08 2.91 7.00 -2.39 -0.02 2.90 16 33 H 0.09 3.68 5.49 -2.39 -0.01 3.67 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 3.34 5.90 -2.38 -0.01 3.33 16 36 H 0.03 1.31 6.58 -2.38 -0.02 1.29 16 37 H 0.03 1.34 5.94 -2.39 -0.01 1.32 16 38 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 39 H 0.07 2.46 8.05 -2.38 -0.02 2.44 16 40 H 0.06 2.22 7.44 -2.39 -0.02 2.20 16 41 H 0.05 1.47 7.87 -2.39 -0.02 1.45 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.04 1.41 6.35 -2.38 -0.02 1.39 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.03 1.11 6.35 -2.39 -0.02 1.10 16 48 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 50 H 0.06 1.90 7.90 -2.39 -0.02 1.89 16 51 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.11 2.22 6.93 -2.39 -0.02 2.20 16 53 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -61.00 404.54 5.62 -55.37 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.88 Total: 26.80 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 7.10 Total: 23.94 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -4.14 Total: -91.92 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -0.24 Total: -56.72 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -61.00 5.62 -55.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826578031.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.028 kcal (2) G-P(sol) polarization free energy of solvation -60.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds